AlfalfaGEDB | MsaG030908

M. sativa ssp. caerulea / MsaG030908

KEGG: K04498
GO: -
PFAM: PF00628.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030908	sp\|Q6YXY2\|HACL1_ORYSJ	47.854	769	347	13	46	775	904	1657	0.0	722

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030908	tr\|A0A396HCL0\|A0A396HCL0_MEDTR	92.041	779	58	3	1	778	1	776	0.0	1480

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TFs/TRs:

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Gene ID	Type	Classification
MsaG030908	TR	TAZ

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000609	MsaG030908	0.811251	1.318020e-50	2.320588e-48
MsaG000676	MsaG030908	0.813358	4.591245e-51	8.516636e-49
MsaG001496	MsaG030908	0.819447	2.021706e-52	4.382005e-50
MsaG002064	MsaG030908	0.830347	5.558737e-55	1.624806e-52
MsaG002250	MsaG030908	0.888922	8.404378e-73	2.341867e-69
MsaG003009	MsaG030908	0.806544	1.324457e-49	2.082086e-47
MsaG003555	MsaG030908	0.832287	1.863342e-55	5.760966e-53
MsaG003596	MsaG030908	0.835525	2.909936e-56	9.901878e-54
MsaG003648	MsaG030908	0.827276	3.051663e-54	8.177472e-52
MsaG003749	MsaG030908	0.903697	6.211607e-79	3.957298e-75

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030908	MtrunA17_Chr6g0456861	92.041	779	58	3	1	778	1	776	0.0	1480
MsaG030908	MtrunA17_Chr5g0438991	83.844	718	101	7	58	765	246	958	0.0	1229
MsaG030908	MtrunA17_Chr3g0138411	71.011	821	172	11	22	778	388	1206	0.0	1171
MsaG030908	MtrunA17_Chr3g0133461	67.523	856	191	13	2	778	496	1343	0.0	1134
MsaG030908	MtrunA17_Chr4g0000031	46.135	802	342	15	51	775	909	1697	0.0	704
MsaG030908	MtrunA17_Chr6g0456851	63.136	491	155	9	59	529	349	833	0.0	608
MsaG030908	MtrunA17_Chr6g0456851	73.770	61	15	1	584	644	820	879	8.04e-19	91.7
MsaG030908	MtrunA17_Chr6g0456931	71.020	245	63	2	251	487	1	245	1.95e-120	362
MsaG030908	MtrunA17_Chr5g0401991	77.056	231	41	3	472	700	1	221	1.75e-114	345
MsaG030908	MtrunA17_Chr5g0402001	84.158	101	15	1	322	421	1	101	6.67e-53	178

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG030908	AT1G79000.1	45.625	800	350	15	51	775	896	1685	712
MsaG030908	AT1G79000.2	45.625	800	350	15	51	775	896	1685	712
MsaG030908	AT1G79000.3	45.625	800	350	15	51	775	872	1661	711
MsaG030908	AT1G16710.2	46.048	797	351	16	51	775	876	1665	697
MsaG030908	AT1G16710.1	46.048	797	351	16	51	775	905	1694	697
MsaG030908	AT1G16710.3	46.048	797	351	16	51	775	879	1668	697
MsaG030908	AT1G16710.10	46.048	797	351	16	51	775	879	1668	697
MsaG030908	AT1G16710.8	46.048	797	351	16	51	775	879	1668	697
MsaG030908	AT1G16710.7	46.048	797	351	16	51	775	879	1668	697
MsaG030908	AT1G16710.6	46.048	797	351	16	51	775	840	1629	697

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Find 115 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGATAAGATGCTTGCCA+AGG	0.606172	6:-16189511	None:intergenic
AAATAGAACAGTAAAGGACA+TGG	0.650828	6:-16187214	MsaT030908.1:CDS
AACGAAGAAAATATTGTCGT+TGG	0.471978	6:-16187414	MsaT030908.1:CDS
AACGATAAGATGCTTGCCAA+GGG	0.615841	6:-16189510	None:intergenic
AAGTAGGATTCTCCACGGAC+TGG	0.561826	6:-16189422	MsaT030908.1:CDS
AATAGAACAGTAAAGGACAT+GGG	0.660656	6:-16187213	MsaT030908.1:CDS
AATATCGCAAGTGAGCAACG+AGG	0.784334	6:+16187027	None:intergenic
AATGATATCGTCCTTGAGAG+TGG	0.608339	6:-16186653	MsaT030908.1:CDS
AATGCAATAAATGCAAAAGA+TGG	0.545817	6:-16188580	MsaT030908.1:CDS
AATGTAGAATACCACGCTGC+AGG	0.540083	6:-16186112	MsaT030908.1:intron

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	16185856	16189523	16185856	ID=MsaG030908
Chr6	mRNA	16185856	16189523	16185856	ID=MsaT030908.1;Parent=MsaG030908
Chr6	exon	16185856	16185943	16185856	ID=MsaT030908.1.exon12;Parent=MsaT030908.1
Chr6	CDS	16185856	16185943	16185856	ID=cds.MsaT030908.1;Parent=MsaT030908.1
Chr6	exon	16186113	16186345	16186113	ID=MsaT030908.1.exon11;Parent=MsaT030908.1
Chr6	CDS	16186113	16186345	16186113	ID=cds.MsaT030908.1;Parent=MsaT030908.1
Chr6	exon	16186439	16186711	16186439	ID=MsaT030908.1.exon10;Parent=MsaT030908.1
Chr6	CDS	16186439	16186711	16186439	ID=cds.MsaT030908.1;Parent=MsaT030908.1
Chr6	exon	16186798	16186855	16186798	ID=MsaT030908.1.exon9;Parent=MsaT030908.1
Chr6	CDS	16186798	16186855	16186798	ID=cds.MsaT030908.1;Parent=MsaT030908.1
Chr6	exon	16186945	16187084	16186945	ID=MsaT030908.1.exon8;Parent=MsaT030908.1
Chr6	CDS	16186945	16187084	16186945	ID=cds.MsaT030908.1;Parent=MsaT030908.1
Chr6	exon	16187173	16187461	16187173	ID=MsaT030908.1.exon7;Parent=MsaT030908.1
Chr6	CDS	16187173	16187461	16187173	ID=cds.MsaT030908.1;Parent=MsaT030908.1
Chr6	exon	16187561	16187703	16187561	ID=MsaT030908.1.exon6;Parent=MsaT030908.1
Chr6	CDS	16187561	16187703	16187561	ID=cds.MsaT030908.1;Parent=MsaT030908.1
Chr6	exon	16187810	16188010	16187810	ID=MsaT030908.1.exon5;Parent=MsaT030908.1
Chr6	CDS	16187810	16188010	16187810	ID=cds.MsaT030908.1;Parent=MsaT030908.1
Chr6	exon	16188090	16188218	16188090	ID=MsaT030908.1.exon4;Parent=MsaT030908.1
Chr6	CDS	16188090	16188218	16188090	ID=cds.MsaT030908.1;Parent=MsaT030908.1
Chr6	exon	16188355	16188609	16188355	ID=MsaT030908.1.exon3;Parent=MsaT030908.1
Chr6	CDS	16188355	16188609	16188355	ID=cds.MsaT030908.1;Parent=MsaT030908.1
Chr6	exon	16188710	16188988	16188710	ID=MsaT030908.1.exon2;Parent=MsaT030908.1
Chr6	CDS	16188710	16188988	16188710	ID=cds.MsaT030908.1;Parent=MsaT030908.1
Chr6	exon	16189275	16189523	16189275	ID=MsaT030908.1.exon1;Parent=MsaT030908.1
Chr6	CDS	16189275	16189523	16189275	ID=cds.MsaT030908.1;Parent=MsaT030908.1

Gene Sequence

>MsaT030908.1

ATGCTTGCCAAGGGTGGGAATACTTCATCAGTTGTCTCAAACATCTCGAGAAAAAGATGTTTTGATGAATTAAGCAATCAAGTAGGATTCTCCACGGACTGGAGGTATCATCCTGAAATGGTACGCAAACGTTATGATCAATCGATTCACAAGACAATTCCCCCAAAAGTTGCCGTTACCTTGATTGATTCGTTCAGACGTGACCAAATAGAAGAACATATTAGTAGTCTGAGAAAGGAATCTGATCAGATTACTTCGGAGGATCAAGCGGGAATTGATGCAAACACTTGCAACCTATGTAAAAGGGAAAGACTTTACTTTGCTAAAGTTCCACTTTTTTGTTTATGTTGCGGTGTCCGCATCAAGAAAATATATTTTTGTACAAAAGAAGAAGAATTTGTTGCACAGGGTTGCATTTGCTCTGAGTGTTACAAGACTTTTAAAGGTGAAAATGTCGAAATCAATGGGACATTTATTTCCAAGAGAAATCTTGCAAAGAGGAATAATGATGAAGTAATTGAAGAACCGTGGGTTGAATGCAATAAATGCAAAAGATGGCAGCATCAAATATGTGCACTCTATAACAAGAAAGCAGATTTGGACTGCAGTGCTGAGTATATATGTCCTTTATGCCGCTTAAAAGAAATTAAAAATAGAATGCATGTTCCAAAAGCTGCTAACTTTGGTGCTAAGGACTTGACAAGAACTGTGCTAAGTGACCACTTAGAGAAAAGACTTTTCAAGCGTCTCATGCAAGAGAGAAAAAACTGGGAAAAAGATGAGGTTTTAGCAGCAGAAAGTCTTTCAATTAGAGAAGTGCTATCTGTCGACAAGCAATTGAAAGTGAATAAGCAGTTTCTGGACATCATCCCAGAGGAGAATTACCCTACTGAATTCTCTTATAGATCAAGGGTTATACTTCTGTTTCAGAAAATTGAAGGAGTAGATGTATGCATTTTTGGAATGTATGTCCAGGAGTTTGGCTCGGAATGTGGCACTCCGAATCAGCGATGTGTATACATTTCATATCTTGATTCCGTCAAGTATTTTAGGCCTAAACGAAGGACAAAGAGTGGAGAAGCCCTACGTACCTTCATTTACCATGAGATATTGATTGGATATCTTGATTTTTGTAAGGAAAGGGGTTTCTCAACTTGCTACATATGGGCCTGTCCTCCAAAAAAAGGTGATGATTATATACTATATTGCCATCCGAAAGAGCAAAAGACTCCGAAGAATCATAAGCTACGCCACTGGTATCTTTCAATGCTAAAAAAGGCTAACGAAGAAAATATTGTCGTTGGTTTAACCAACGTGTATGATCATTTTTTTGTTCCTACTGAAAAAAGGAAATCCAAGGTGACAGTTTCTCGTTTGCCATACTTTGATGGAGACTGGTGGTGCGGTAATGCTATGGTAGTTGCGAAGACCCTCGAAAAAGAGAGTAGAGCAGACTATGAAAAGTTGTTGAAACAAGTGTCAAATAGAACAGTAAAGGACATGGGACATGCCAAGCCTTCCAAAGACATACTGGTGATGCAAAAAGTTGGCCAAAATATATTGCCTACAAGAGAAAACTTCCTCGTTGCTCACTTGCGATATTCTTGCATGCACTGCCGTGAAGTGATAGTTTCTGGGAAGCGTTGGTTTTGCACTGAATGCAAGAATTTTCAGGAGTGTGAAAGATGCCATAGTTCTGAAAATCACACTTTAAAGAACGGCGAGGTGCATACACTTTGTCAGGCTAATGTTGATGATATCCCTTCCGACACTAAATGTAATGATATCGTCCTTGAGAGTGGATTGTTTGAAAATAGGGACAACTTTTTGATCTTCTGCCAGAAGTCTCAGTTACAGTTTGATACACTTCGTCGTGCCAAGTATTCCTCCATGATGATCCTCTACCATCTACACAATCCTAATGTGTTGACTCAAAATGAACACCAGTTGACTCAAAATTGTAATCGTTCAACACCAGTATATCAATCTGGGAATCAGGAGTCAAATGAGAAAATGATGGTGAAACTGATGAACGTTTTGAAGCATGCATCTCAATGCCGCCGCCGCGCAAGTAATGCTGAGCCATGCTCTTATCCAAACTGTTCTCAAATCAAGAAGCTGTTCTATCATGCCAGTAAGTGTGAAATTCGAGCTAATCGAGGCTGCCAGCATTGTAAAAAGATATGGTTTATACTAACTGCTCACTCCAGAAATTGCAAAGACTCGGAATGTAGAATACCACGCTGCAGTGATCTAAAGAAGCATTTAGAAAAGAGATCAAAGCAGTCTGAATCTTGCCGTAGAGCTGAAGTTTTGGAAGCAGTCATTGGCCAATGA

Protein sequence

>MsaT030908.1

MLAKGGNTSSVVSNISRKRCFDELSNQVGFSTDWRYHPEMVRKRYDQSIHKTIPPKVAVTLIDSFRRDQIEEHISSLRKESDQITSEDQAGIDANTCNLCKRERLYFAKVPLFCLCCGVRIKKIYFCTKEEEFVAQGCICSECYKTFKGENVEINGTFISKRNLAKRNNDEVIEEPWVECNKCKRWQHQICALYNKKADLDCSAEYICPLCRLKEIKNRMHVPKAANFGAKDLTRTVLSDHLEKRLFKRLMQERKNWEKDEVLAAESLSIREVLSVDKQLKVNKQFLDIIPEENYPTEFSYRSRVILLFQKIEGVDVCIFGMYVQEFGSECGTPNQRCVYISYLDSVKYFRPKRRTKSGEALRTFIYHEILIGYLDFCKERGFSTCYIWACPPKKGDDYILYCHPKEQKTPKNHKLRHWYLSMLKKANEENIVVGLTNVYDHFFVPTEKRKSKVTVSRLPYFDGDWWCGNAMVVAKTLEKESRADYEKLLKQVSNRTVKDMGHAKPSKDILVMQKVGQNILPTRENFLVAHLRYSCMHCREVIVSGKRWFCTECKNFQECERCHSSENHTLKNGEVHTLCQANVDDIPSDTKCNDIVLESGLFENRDNFLIFCQKSQLQFDTLRRAKYSSMMILYHLHNPNVLTQNEHQLTQNCNRSTPVYQSGNQESNEKMMVKLMNVLKHASQCRRRASNAEPCSYPNCSQIKKLFYHASKCEIRANRGCQHCKKIWFILTAHSRNCKDSECRIPRCSDLKKHLEKRSKQSESCRRAEVLEAVIGQ*