AlfalfaGEDB | MsaG030908

M. sativa ssp. caerulea / MsaG030908

KEGG: K04498
GO: -
PFAM: PF00628.32

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030908	sp\|Q6YXY2\|HACL1_ORYSJ	47.854	769	347	13	46	775	904	1657	0.0	722

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030908	tr\|A0A396HCL0\|A0A396HCL0_MEDTR	92.041	779	58	3	1	778	1	776	0.0	1480

TFs/TRs:

Gene ID	Type	Classification
MsaG030908	TR	TAZ

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000609	MsaG030908	0.811251	1.318020e-50	2.320588e-48
MsaG001496	MsaG030908	0.819447	2.021706e-52	4.382005e-50
MsaG003555	MsaG030908	0.832287	1.863342e-55	5.760966e-53
MsaG003596	MsaG030908	0.835525	2.909936e-56	9.901878e-54
MsaG003648	MsaG030908	0.827276	3.051663e-54	8.177472e-52
MsaG003749	MsaG030908	0.903697	6.211607e-79	3.957298e-75
MsaG004446	MsaG030908	0.835060	3.808462e-56	1.278004e-53
MsaG004507	MsaG030908	0.812201	8.205877e-51	1.478870e-48
MsaG004973	MsaG030908	0.831957	2.245938e-55	6.878046e-53
MsaG005107	MsaG030908	0.826929	3.692268e-54	9.798416e-52
MsaG005101	MsaG030908	0.817290	6.192100e-52	1.269063e-49
MsaG005210	MsaG030908	0.828079	1.962264e-54	5.377834e-52
MsaG005277	MsaG030908	0.814644	2.397913e-51	4.593779e-49
MsaG005577	MsaG030908	0.803197	6.578459e-49	9.565565e-47
MsaG006100	MsaG030908	0.805985	1.735202e-49	2.691757e-47
MsaG006283	MsaG030908	0.845562	7.056930e-59	3.294007e-56
MsaG006335	MsaG030908	0.805498	2.193234e-49	3.363654e-47
MsaG006397	MsaG030908	0.805844	1.856743e-49	2.870872e-47
MsaG006564	MsaG030908	0.839043	3.695636e-57	1.400189e-54
MsaG007000	MsaG030908	0.830972	3.914926e-55	1.164969e-52
MsaG007040	MsaG030908	0.808106	6.204494e-50	1.012260e-47
MsaG007544	MsaG030908	0.802038	1.138263e-48	1.611595e-46
MsaG008142	MsaG030908	0.814943	2.060164e-51	3.976665e-49
MsaG011366	MsaG030908	0.900202	2.135032e-77	1.105386e-73
MsaG011470	MsaG030908	0.805927	1.783943e-49	2.763692e-47
MsaG011889	MsaG030908	0.820838	9.741896e-53	2.190516e-50
MsaG042103	MsaG030908	0.824705	1.237819e-53	3.088651e-51
MsaG042398	MsaG030908	0.880542	1.065858e-69	1.973419e-66
MsaG042717	MsaG030908	0.814194	3.011538e-51	5.704650e-49
MsaG044227	MsaG030908	0.830298	5.716000e-55	1.668374e-52
MsaG045105	MsaG030908	0.863329	5.344236e-64	4.724838e-61
MsaG045238	MsaG030908	0.822554	3.924700e-53	9.238010e-51
MsaG045239	MsaG030908	0.847679	1.875965e-59	9.398080e-57
MsaG046055	MsaG030908	0.841766	7.231284e-58	2.984678e-55
MsaG046530	MsaG030908	0.842181	5.624314e-58	2.352332e-55
MsaG046861	MsaG030908	0.874193	1.688402e-67	2.343490e-64
MsaG047047	MsaG030908	0.807107	1.008780e-49	1.606940e-47
MsaG047187	MsaG030908	0.824719	1.228460e-53	3.066443e-51
MsaG002250	MsaG030908	0.888922	8.404378e-73	2.341867e-69
MsaG000676	MsaG030908	0.813358	4.591245e-51	8.516636e-49
MsaG003009	MsaG030908	0.806544	1.324457e-49	2.082086e-47
MsaG002064	MsaG030908	0.830347	5.558737e-55	1.624806e-52
MsaG008206	MsaG030908	0.805732	1.960000e-49	3.022551e-47
MsaG013706	MsaG030908	0.835339	3.241919e-56	1.096959e-53
MsaG014237	MsaG030908	0.844748	1.168198e-58	5.308883e-56
MsaG027608	MsaG030908	0.875916	4.389154e-68	6.574814e-65
MsaG027534	MsaG030908	0.874920	9.588327e-68	1.374141e-64
MsaG026750	MsaG030908	0.811256	1.314676e-50	2.314988e-48
MsaG028944	MsaG030908	0.801707	1.330070e-48	1.869048e-46
MsaG033233	MsaG030908	0.804739	3.155897e-49	4.755604e-47
MsaG033253	MsaG030908	0.869964	4.239677e-66	4.906290e-63
MsaG033515	MsaG030908	0.888044	1.823907e-72	4.861319e-69
MsaG032134	MsaG030908	0.810769	1.674014e-50	2.912847e-48
MsaG033089	MsaG030908	0.810169	2.253176e-50	3.863567e-48
MsaG031454	MsaG030908	0.837245	1.067934e-56	3.826995e-54
MsaG030747	MsaG030908	0.966863	6.738683e-126	5.760821e-120
MsaG030908	MsaG040848	0.812744	6.252302e-51	1.142123e-48
MsaG030908	MsaG036565	0.828025	2.021224e-54	5.531225e-52
MsaG030908	MsaG036260	0.851804	1.337784e-60	7.717745e-58
MsaG030908	MsaG040777	0.832547	1.607082e-55	5.006425e-53
MsaG030908	MsaG038588	0.846244	4.614596e-59	2.203420e-56
MsaG014774	MsaG030908	0.806769	1.187930e-49	1.877378e-47
MsaG016077	MsaG030908	0.804361	3.781086e-49	5.648166e-47
MsaG017128	MsaG030908	0.811961	9.252048e-51	1.657650e-48
MsaG017298	MsaG030908	0.841912	6.617231e-58	2.744254e-55
MsaG017533	MsaG030908	0.801892	1.219065e-48	1.720367e-46
MsaG017620	MsaG030908	0.815755	1.361749e-51	2.683133e-49
MsaG017656	MsaG030908	0.823954	1.855316e-53	4.535724e-51
MsaG017942	MsaG030908	0.839424	2.947287e-57	1.129894e-54
MsaG017984	MsaG030908	0.848444	1.156284e-59	5.942718e-57
MsaG018044	MsaG030908	0.840308	1.738759e-57	6.853746e-55
MsaG018200	MsaG030908	0.845499	7.336673e-59	3.417414e-56
MsaG018290	MsaG030908	0.809348	3.375299e-50	5.673750e-48
MsaG018770	MsaG030908	0.809778	2.732494e-50	4.641371e-48
MsaG018793	MsaG030908	0.816414	9.717703e-52	1.947133e-49
MsaG018874	MsaG030908	0.841817	7.012309e-58	2.898977e-55
MsaG019108	MsaG030908	0.806751	1.198261e-49	1.892907e-47
MsaG019564	MsaG030908	0.839028	3.729416e-57	1.412293e-54
MsaG019660	MsaG030908	0.801722	1.320516e-48	1.856290e-46
MsaG019985	MsaG030908	0.820595	1.107036e-52	2.473347e-50
MsaG020415	MsaG030908	0.852987	6.180973e-61	3.717456e-58
MsaG020527	MsaG030908	0.885641	1.472776e-71	3.480043e-68
MsaG022021	MsaG030908	0.805920	1.790543e-49	2.773402e-47
MsaG022065	MsaG030908	0.862945	7.018044e-64	6.111628e-61
MsaG022486	MsaG030908	0.890690	1.729559e-73	5.284479e-70
MsaG023654	MsaG030908	0.827666	2.463312e-54	6.673278e-52
MsaG024037	MsaG030908	0.856477	6.085802e-62	4.148773e-59
MsaG024114	MsaG030908	0.849029	7.972410e-60	4.180177e-57
MsaG026478	MsaG030908	0.837950	7.055708e-57	2.583790e-54
MsaG027055	MsaG030908	0.842927	3.572893e-58	1.530546e-55
MsaG027661	MsaG030908	0.802099	1.105846e-48	1.567874e-46
MsaG027750	MsaG030908	0.856040	8.161988e-62	5.475542e-59
MsaG028154	MsaG030908	0.825485	8.112055e-54	2.068040e-51
MsaG029217	MsaG030908	0.850989	2.268440e-60	1.272082e-57
MsaG029473	MsaG030908	0.877943	8.765691e-69	1.438893e-65
MsaG029619	MsaG030908	0.825184	9.552706e-54	2.415143e-51
MsaG029653	MsaG030908	0.832908	1.309282e-55	4.121940e-53
MsaG029661	MsaG030908	0.818869	2.732259e-52	5.832915e-50
MsaG030359	MsaG030908	0.804319	3.857953e-49	5.757320e-47
MsaG035059	MsaG030908	0.860811	3.135204e-63	2.514359e-60
MsaG034996	MsaG030908	0.845901	5.717124e-59	2.698793e-56
MsaG036508	MsaG030908	0.817526	5.484567e-52	1.130850e-49
MsaG036753	MsaG030908	0.831412	3.056633e-55	9.212362e-53
MsaG040425	MsaG030908	0.862220	1.169887e-63	9.902567e-61
MsaG041112	MsaG030908	0.866919	4.031897e-65	4.116127e-62
MsaG041285	MsaG030908	0.864240	2.793467e-64	2.560418e-61

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030908	MtrunA17_Chr6g0456861	92.041	779	58	3	1	778	1	776	0.0	1480
MsaG030908	MtrunA17_Chr5g0438991	83.844	718	101	7	58	765	246	958	0.0	1229
MsaG030908	MtrunA17_Chr3g0138411	71.011	821	172	11	22	778	388	1206	0.0	1171
MsaG030908	MtrunA17_Chr3g0133461	67.523	856	191	13	2	778	496	1343	0.0	1134
MsaG030908	MtrunA17_Chr4g0000031	46.135	802	342	15	51	775	909	1697	0.0	704
MsaG030908	MtrunA17_Chr6g0456851	63.136	491	155	9	59	529	349	833	0.0	608
MsaG030908	MtrunA17_Chr6g0456851	73.770	61	15	1	584	644	820	879	8.04e-19	91.7
MsaG030908	MtrunA17_Chr6g0456931	71.020	245	63	2	251	487	1	245	1.95e-120	362
MsaG030908	MtrunA17_Chr5g0401991	77.056	231	41	3	472	700	1	221	1.75e-114	345
MsaG030908	MtrunA17_Chr5g0402001	84.158	101	15	1	322	421	1	101	6.67e-53	178
MsaG030908	MtrunA17_Chr5g0439001	81.915	94	17	0	423	516	1	94	8.43e-45	157
MsaG030908	MtrunA17_Chr1g0169961	69.880	83	24	1	58	140	87	168	6.92e-31	119
MsaG030908	MtrunA17_Chr6g0456911	90.741	54	5	0	584	637	7	60	8.92e-27	103
MsaG030908	MtrunA17_Chr0c02g0489811	87.719	57	7	0	581	637	5	61	4.66e-26	102
MsaG030908	MtrunA17_Chr7g0229221	84.211	57	9	0	581	637	5	61	8.79e-25	98.6
MsaG030908	MtrunA17_Chr0c02g0489731	80.702	57	11	0	581	637	5	61	2.75e-23	94.4
MsaG030908	MtrunA17_Chr0c02g0489721	89.362	47	5	0	511	557	1	47	3.08e-23	93.2
MsaG030908	MtrunA17_Chr7g0229231	89.362	47	5	0	511	557	1	47	3.08e-23	93.2
MsaG030908	MtrunA17_Chr0c02g0489821	91.111	45	4	0	513	557	1	45	2.48e-22	90.5
MsaG030908	MtrunA17_Chr6g0456921	39.024	164	42	4	322	484	1	107	1.50e-21	96.7
MsaG030908	MtrunA17_Chr6g0456781	63.492	63	20	1	112	174	25	84	3.82e-17	78.6
MsaG030908	MtrunA17_Chr5g0402011	96.774	31	1	0	177	207	21	51	6.45e-15	70.5
MsaG030908	MtrunA17_Chr5g0401281	40.278	72	42	1	694	764	279	350	4.25e-12	68.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG030908	AT1G79000.1	45.625	800	350	15	51	775	896	1685	0.0	712
MsaG030908	AT1G79000.2	45.625	800	350	15	51	775	896	1685	0.0	712
MsaG030908	AT1G79000.3	45.625	800	350	15	51	775	872	1661	0.0	711
MsaG030908	AT1G16710.2	46.048	797	351	16	51	775	876	1665	0.0	697
MsaG030908	AT1G16710.1	46.048	797	351	16	51	775	905	1694	0.0	697
MsaG030908	AT1G16710.3	46.048	797	351	16	51	775	879	1668	0.0	697
MsaG030908	AT1G16710.10	46.048	797	351	16	51	775	879	1668	0.0	697
MsaG030908	AT1G16710.8	46.048	797	351	16	51	775	879	1668	0.0	697
MsaG030908	AT1G16710.7	46.048	797	351	16	51	775	879	1668	0.0	697
MsaG030908	AT1G16710.6	46.048	797	351	16	51	775	840	1629	0.0	697
MsaG030908	AT1G16710.4	46.048	797	351	16	51	775	840	1629	0.0	697
MsaG030908	AT1G16710.5	46.048	797	351	16	51	775	840	1629	0.0	697
MsaG030908	AT3G12980.2	45.536	784	350	16	58	775	804	1576	0.0	684
MsaG030908	AT3G12980.1	45.536	784	350	16	58	775	885	1657	0.0	684
MsaG030908	AT1G67220.1	42.561	773	361	17	56	756	602	1363	0.0	601
MsaG030908	AT1G55970.1	41.423	787	382	12	60	775	681	1459	0.0	597
MsaG030908	AT1G55970.2	41.296	787	369	13	60	775	681	1445	0.0	591
MsaG030908	AT1G16710.9	50.186	538	241	10	55	567	883	1418	2.58e-174	540
MsaG030908	AT5G67480.2	40.230	87	50	2	692	777	282	367	1.37e-12	70.9
MsaG030908	AT5G67480.1	40.230	87	50	2	692	777	271	356	1.42e-12	70.5
MsaG030908	AT5G67480.3	40.230	87	50	2	692	777	271	356	1.42e-12	70.5

Find 115 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCCGAGTCTTTGCAATTTC+TGG	0.071145	6:+16186133	None:intergenic
TACTAATATGTTCTTCTATT+TGG	0.118199	6:+16189298	None:intergenic
CTCTTGTAGGCAATATATTT+TGG	0.161705	6:+16187057	None:intergenic
ACACTTGCAACCTATGTAAA+AGG	0.199149	6:-16188932	MsaT030908.1:CDS
GAAAGTGAATAAGCAGTTTC+TGG	0.202627	6:-16188140	MsaT030908.1:CDS
TAACGTTTGCGTACCATTTC+AGG	0.204389	6:+16189390	None:intergenic
AGAGTGGATTGTTTGAAAAT+AGG	0.213298	6:-16186637	MsaT030908.1:CDS
ATCAAGGTAACGGCAACTTT+TGG	0.251828	6:+16189339	None:intergenic
TGCCGTGAAGTGATAGTTTC+TGG	0.256762	6:-16186993	MsaT030908.1:CDS
GAGTGGATTGTTTGAAAATA+GGG	0.257007	6:-16186636	MsaT030908.1:CDS
GCACCAAAGTTAGCAGCTTT+TGG	0.260444	6:+16188449	None:intergenic
AGCTCGAATTTCACACTTAC+TGG	0.290061	6:+16186208	None:intergenic
CTTCATTTACCATGAGATAT+TGG	0.309170	6:-16187809	MsaT030908.1:intron
TTGCATCACCAGTATGTCTT+TGG	0.314513	6:+16187176	None:intergenic
GGAATGTATGTCCAGGAGTT+TGG	0.324631	6:-16187940	MsaT030908.1:CDS
TCAGGAGTCAAATGAGAAAA+TGG	0.324783	6:-16186438	MsaT030908.1:intron
CTATAACAAGAAAGCAGATT+TGG	0.325291	6:-16188537	MsaT030908.1:CDS
GTTTCTCAACTTGCTACATA+TGG	0.342725	6:-16187650	MsaT030908.1:CDS
CCACTCTTTGTCCTTCGTTT+AGG	0.346842	6:+16187847	None:intergenic
TGATTCCCAGATTGATATAC+TGG	0.360737	6:+16186458	None:intergenic
TTGCCGTAGAGCTGAAGTTT+TGG	0.363294	6:-16185876	MsaT030908.1:CDS
CTTCTGTTTCAGAAAATTGA+AGG	0.379117	6:-16187982	MsaT030908.1:CDS
TCTCGTTTGCCATACTTTGA+TGG	0.385478	6:-16187327	MsaT030908.1:CDS
AGTATATCAATCTGGGAATC+AGG	0.385611	6:-16186456	MsaT030908.1:CDS
CCTCTTTGCAAGATTTCTCT+TGG	0.395307	6:+16188737	None:intergenic
TCAACACCAGTATATCAATC+TGG	0.396643	6:-16186464	MsaT030908.1:CDS
CACCAGTCTCCATCAAAGTA+TGG	0.407484	6:+16187318	None:intergenic
CAGCATTACTTGCGCGGCGG+CGG	0.411023	6:+16186282	None:intergenic
TGATGAAGTAATTGAAGAAC+CGG	0.418960	6:-16188709	MsaT030908.1:intron
TCAGTAGGGTAATTCTCCTC+TGG	0.420217	6:+16188109	None:intergenic
ACACATTAGGATTGTGTAGA+TGG	0.424071	6:+16186528	None:intergenic
CTGAATTCTCTTATAGATCA+AGG	0.429818	6:-16188090	MsaT030908.1:CDS
TGGCGTAGCTTATGATTCTT+CGG	0.436945	6:+16187564	None:intergenic
ATGTATACACATCGCTGATT+CGG	0.437115	6:+16187901	None:intergenic
GTGAAAATGTCGAAATCAAT+GGG	0.443673	6:-16188770	MsaT030908.1:CDS
AGAAGAAGAATTTGTTGCAC+AGG	0.447712	6:-16188829	MsaT030908.1:CDS
GTTCCAAAAGCTGCTAACTT+TGG	0.449417	6:-16188452	MsaT030908.1:CDS
GGTGAAAATGTCGAAATCAA+TGG	0.451080	6:-16188771	MsaT030908.1:CDS
TTCTTGATTTGAGAACAGTT+TGG	0.463384	6:+16186245	None:intergenic
CAAGCCTTCCAAAGACATAC+TGG	0.466131	6:-16187184	MsaT030908.1:CDS
CGAGGTGCATACACTTTGTC+AGG	0.471850	6:-16186797	MsaT030908.1:intron
AACGAAGAAAATATTGTCGT+TGG	0.471978	6:-16187414	MsaT030908.1:CDS
CAGTATGTCTTTGGAAGGCT+TGG	0.474548	6:+16187185	None:intergenic
TTTAGGCCTAAAATACTTGA+CGG	0.475728	6:+16187864	None:intergenic
GATCATCATGGAGGAATACT+TGG	0.481567	6:+16186556	None:intergenic
AGCTGCTAACTTTGGTGCTA+AGG	0.483464	6:-16188444	MsaT030908.1:CDS
TTTCTCAACTTGCTACATAT+GGG	0.487718	6:-16187649	MsaT030908.1:CDS
GCCGTGAAGTGATAGTTTCT+GGG	0.489549	6:-16186992	MsaT030908.1:CDS
CAAACTGTAACTGAGACTTC+TGG	0.491241	6:+16186594	None:intergenic
TCTGAGAAAGGAATCTGATC+AGG	0.491907	6:-16189274	MsaT030908.1:intron
CTGGAGGTATCATCCTGAAA+TGG	0.492094	6:-16189403	MsaT030908.1:CDS
TCCCAGAAACTATCACTTCA+CGG	0.498199	6:+16186991	None:intergenic
GATCTATAAGAGAATTCAGT+AGG	0.499651	6:+16188094	None:intergenic
TGCCATACTTTGATGGAGAC+TGG	0.505154	6:-16187320	MsaT030908.1:CDS
CTCCAGAAATTGCAAAGACT+CGG	0.505505	6:-16186135	MsaT030908.1:CDS
CACTTGCAACCTATGTAAAA+GGG	0.507975	6:-16188931	MsaT030908.1:CDS
CAGTAGGGTAATTCTCCTCT+GGG	0.517758	6:+16188110	None:intergenic
CACATTCCGAGCCAAACTCC+TGG	0.518027	6:+16187929	None:intergenic
ACATATTAGTAGTCTGAGAA+AGG	0.521580	6:-16189286	MsaT030908.1:CDS
CAATATCTCATGGTAAATGA+AGG	0.523814	6:+16187810	None:intergenic
CAGGAGTTTGGCTCGGAATG+TGG	0.533156	6:-16187928	MsaT030908.1:CDS
GATGAATTAAGCAATCAAGT+AGG	0.536338	6:-16189438	MsaT030908.1:CDS
AGTGTCAAATAGAACAGTAA+AGG	0.538963	6:-16187220	MsaT030908.1:CDS
AATGTAGAATACCACGCTGC+AGG	0.540083	6:-16186112	MsaT030908.1:intron
TCATTACATTTAGTGTCGGA+AGG	0.542457	6:+16186671	None:intergenic
CAACACCAGTATATCAATCT+GGG	0.542971	6:-16186463	MsaT030908.1:CDS
ATCACCAGTATGTCTTTGGA+AGG	0.545017	6:+16187180	None:intergenic
AATGCAATAAATGCAAAAGA+TGG	0.545817	6:-16188580	MsaT030908.1:CDS
CCAAGAGAAATCTTGCAAAG+AGG	0.547222	6:-16188737	MsaT030908.1:CDS
TGATAGTTTCTGGGAAGCGT+TGG	0.550391	6:-16186983	MsaT030908.1:CDS
GAAGAAGAATTTGTTGCACA+GGG	0.550697	6:-16188828	MsaT030908.1:CDS
CTTCCAAAACTTCAGCTCTA+CGG	0.553582	6:+16185873	None:intergenic
TAGGATTGTGTAGATGGTAG+AGG	0.554657	6:+16186534	None:intergenic
GAAAATCACACTTTAAAGAA+CGG	0.556132	6:-16186820	MsaT030908.1:CDS
TGATGAAGTATTCCCACCCT+TGG	0.558501	6:+16189494	None:intergenic
GATAAGATGCTTGCCAAGGG+TGG	0.559997	6:-16189507	None:intergenic
AAGTAGGATTCTCCACGGAC+TGG	0.561826	6:-16189422	MsaT030908.1:CDS
TTTCAAACAATCCACTCTCA+AGG	0.566291	6:+16186642	None:intergenic
TTTAACACAGATTACTTCGG+AGG	0.566404	6:-16188976	MsaT030908.1:intron
ACGTCTGAACGAATCAATCA+AGG	0.571106	6:+16189323	None:intergenic
TGAATTCTCTTATAGATCAA+GGG	0.573900	6:-16188089	MsaT030908.1:intron
ATGGTAAATGAAGGTACGTA+GGG	0.587456	6:+16187819	None:intergenic
GATATCATTACATTTAGTGT+CGG	0.593014	6:+16186667	None:intergenic
CTGGTGGTGCGGTAATGCTA+TGG	0.593172	6:-16187301	MsaT030908.1:CDS
CAAACGAGAAACTGTCACCT+TGG	0.598098	6:+16187341	None:intergenic
GAACGAATCAATCAAGGTAA+CGG	0.599152	6:+16189329	None:intergenic
ATTACTTCGGAGGATCAAGC+GGG	0.599995	6:-16188966	MsaT030908.1:CDS
CATTACATTTAGTGTCGGAA+GGG	0.603073	6:+16186672	None:intergenic
AAACGATAAGATGCTTGCCA+AGG	0.606172	6:-16189511	None:intergenic
AATGATATCGTCCTTGAGAG+TGG	0.608339	6:-16186653	MsaT030908.1:CDS
ATAAGATGCTTGCCAAGGGT+GGG	0.608365	6:-16189506	None:intergenic
AACGATAAGATGCTTGCCAA+GGG	0.615841	6:-16189510	None:intergenic
TAGGATTCTCCACGGACTGG+AGG	0.617211	6:-16189419	MsaT030908.1:CDS
CATGGTAAATGAAGGTACGT+AGG	0.618969	6:+16187818	None:intergenic
CCTAAACGAAGGACAAAGAG+TGG	0.619303	6:-16187847	MsaT030908.1:CDS
GTATGTCCAGGAGTTTGGCT+CGG	0.620509	6:-16187935	MsaT030908.1:CDS
GAACAGTTTGGATAAGAGCA+TGG	0.621021	6:+16186257	None:intergenic
AGAATCATAAGCTACGCCAC+TGG	0.623293	6:-16187560	MsaT030908.1:intron
GATTACTTCGGAGGATCAAG+CGG	0.630451	6:-16188967	MsaT030908.1:CDS
ATCTATAAGAGAATTCAGTA+GGG	0.634140	6:+16188095	None:intergenic
AAATAGAACAGTAAAGGACA+TGG	0.650828	6:-16187214	MsaT030908.1:CDS
AGGATGATACCTCCAGTCCG+TGG	0.660502	6:+16189410	None:intergenic
AATAGAACAGTAAAGGACAT+GGG	0.660656	6:-16187213	MsaT030908.1:CDS
TAGATGGTAGAGGATCATCA+TGG	0.661036	6:+16186544	None:intergenic
CAATCAAGTAGGATTCTCCA+CGG	0.672810	6:-16189427	MsaT030908.1:CDS
ATGGCTCAGCATTACTTGCG+CGG	0.676392	6:+16186276	None:intergenic
TGTGAAATTCGAGCTAATCG+AGG	0.677098	6:-16186200	MsaT030908.1:CDS
CATACTTTGATGGAGACTGG+TGG	0.703400	6:-16187317	MsaT030908.1:CDS
TTTGATGGAGACTGGTGGTG+CGG	0.706712	6:-16187312	MsaT030908.1:CDS
GCTCAGCATTACTTGCGCGG+CGG	0.731289	6:+16186279	None:intergenic
ACTGTAACACACCTGCAGCG+TGG	0.736209	6:+16186101	None:intergenic
ATGGTAGAGGATCATCATGG+AGG	0.740516	6:+16186547	None:intergenic
GTTTCTGGACATCATCCCAG+AGG	0.751856	6:-16188125	MsaT030908.1:CDS
TCACACTTTAAAGAACGGCG+AGG	0.754453	6:-16186815	MsaT030908.1:CDS
AATATCGCAAGTGAGCAACG+AGG	0.784334	6:+16187027	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	16185856	16189523	16185856	ID=MsaG030908
Chr6	mRNA	16185856	16189523	16185856	ID=MsaT030908.1;Parent=MsaG030908
Chr6	exon	16185856	16185943	16185856	ID=MsaT030908.1.exon12;Parent=MsaT030908.1
Chr6	CDS	16185856	16185943	16185856	ID=cds.MsaT030908.1;Parent=MsaT030908.1
Chr6	exon	16186113	16186345	16186113	ID=MsaT030908.1.exon11;Parent=MsaT030908.1
Chr6	CDS	16186113	16186345	16186113	ID=cds.MsaT030908.1;Parent=MsaT030908.1
Chr6	exon	16186439	16186711	16186439	ID=MsaT030908.1.exon10;Parent=MsaT030908.1
Chr6	CDS	16186439	16186711	16186439	ID=cds.MsaT030908.1;Parent=MsaT030908.1
Chr6	exon	16186798	16186855	16186798	ID=MsaT030908.1.exon9;Parent=MsaT030908.1
Chr6	CDS	16186798	16186855	16186798	ID=cds.MsaT030908.1;Parent=MsaT030908.1
Chr6	exon	16186945	16187084	16186945	ID=MsaT030908.1.exon8;Parent=MsaT030908.1
Chr6	CDS	16186945	16187084	16186945	ID=cds.MsaT030908.1;Parent=MsaT030908.1
Chr6	exon	16187173	16187461	16187173	ID=MsaT030908.1.exon7;Parent=MsaT030908.1
Chr6	CDS	16187173	16187461	16187173	ID=cds.MsaT030908.1;Parent=MsaT030908.1
Chr6	exon	16187561	16187703	16187561	ID=MsaT030908.1.exon6;Parent=MsaT030908.1
Chr6	CDS	16187561	16187703	16187561	ID=cds.MsaT030908.1;Parent=MsaT030908.1
Chr6	exon	16187810	16188010	16187810	ID=MsaT030908.1.exon5;Parent=MsaT030908.1
Chr6	CDS	16187810	16188010	16187810	ID=cds.MsaT030908.1;Parent=MsaT030908.1
Chr6	exon	16188090	16188218	16188090	ID=MsaT030908.1.exon4;Parent=MsaT030908.1
Chr6	CDS	16188090	16188218	16188090	ID=cds.MsaT030908.1;Parent=MsaT030908.1
Chr6	exon	16188355	16188609	16188355	ID=MsaT030908.1.exon3;Parent=MsaT030908.1
Chr6	CDS	16188355	16188609	16188355	ID=cds.MsaT030908.1;Parent=MsaT030908.1
Chr6	exon	16188710	16188988	16188710	ID=MsaT030908.1.exon2;Parent=MsaT030908.1
Chr6	CDS	16188710	16188988	16188710	ID=cds.MsaT030908.1;Parent=MsaT030908.1
Chr6	exon	16189275	16189523	16189275	ID=MsaT030908.1.exon1;Parent=MsaT030908.1
Chr6	CDS	16189275	16189523	16189275	ID=cds.MsaT030908.1;Parent=MsaT030908.1

Gene Sequence

>MsaT030908.1

ATGCTTGCCAAGGGTGGGAATACTTCATCAGTTGTCTCAAACATCTCGAGAAAAAGATGTTTTGATGAATTAAGCAATCAAGTAGGATTCTCCACGGACTGGAGGTATCATCCTGAAATGGTACGCAAACGTTATGATCAATCGATTCACAAGACAATTCCCCCAAAAGTTGCCGTTACCTTGATTGATTCGTTCAGACGTGACCAAATAGAAGAACATATTAGTAGTCTGAGAAAGGAATCTGATCAGATTACTTCGGAGGATCAAGCGGGAATTGATGCAAACACTTGCAACCTATGTAAAAGGGAAAGACTTTACTTTGCTAAAGTTCCACTTTTTTGTTTATGTTGCGGTGTCCGCATCAAGAAAATATATTTTTGTACAAAAGAAGAAGAATTTGTTGCACAGGGTTGCATTTGCTCTGAGTGTTACAAGACTTTTAAAGGTGAAAATGTCGAAATCAATGGGACATTTATTTCCAAGAGAAATCTTGCAAAGAGGAATAATGATGAAGTAATTGAAGAACCGTGGGTTGAATGCAATAAATGCAAAAGATGGCAGCATCAAATATGTGCACTCTATAACAAGAAAGCAGATTTGGACTGCAGTGCTGAGTATATATGTCCTTTATGCCGCTTAAAAGAAATTAAAAATAGAATGCATGTTCCAAAAGCTGCTAACTTTGGTGCTAAGGACTTGACAAGAACTGTGCTAAGTGACCACTTAGAGAAAAGACTTTTCAAGCGTCTCATGCAAGAGAGAAAAAACTGGGAAAAAGATGAGGTTTTAGCAGCAGAAAGTCTTTCAATTAGAGAAGTGCTATCTGTCGACAAGCAATTGAAAGTGAATAAGCAGTTTCTGGACATCATCCCAGAGGAGAATTACCCTACTGAATTCTCTTATAGATCAAGGGTTATACTTCTGTTTCAGAAAATTGAAGGAGTAGATGTATGCATTTTTGGAATGTATGTCCAGGAGTTTGGCTCGGAATGTGGCACTCCGAATCAGCGATGTGTATACATTTCATATCTTGATTCCGTCAAGTATTTTAGGCCTAAACGAAGGACAAAGAGTGGAGAAGCCCTACGTACCTTCATTTACCATGAGATATTGATTGGATATCTTGATTTTTGTAAGGAAAGGGGTTTCTCAACTTGCTACATATGGGCCTGTCCTCCAAAAAAAGGTGATGATTATATACTATATTGCCATCCGAAAGAGCAAAAGACTCCGAAGAATCATAAGCTACGCCACTGGTATCTTTCAATGCTAAAAAAGGCTAACGAAGAAAATATTGTCGTTGGTTTAACCAACGTGTATGATCATTTTTTTGTTCCTACTGAAAAAAGGAAATCCAAGGTGACAGTTTCTCGTTTGCCATACTTTGATGGAGACTGGTGGTGCGGTAATGCTATGGTAGTTGCGAAGACCCTCGAAAAAGAGAGTAGAGCAGACTATGAAAAGTTGTTGAAACAAGTGTCAAATAGAACAGTAAAGGACATGGGACATGCCAAGCCTTCCAAAGACATACTGGTGATGCAAAAAGTTGGCCAAAATATATTGCCTACAAGAGAAAACTTCCTCGTTGCTCACTTGCGATATTCTTGCATGCACTGCCGTGAAGTGATAGTTTCTGGGAAGCGTTGGTTTTGCACTGAATGCAAGAATTTTCAGGAGTGTGAAAGATGCCATAGTTCTGAAAATCACACTTTAAAGAACGGCGAGGTGCATACACTTTGTCAGGCTAATGTTGATGATATCCCTTCCGACACTAAATGTAATGATATCGTCCTTGAGAGTGGATTGTTTGAAAATAGGGACAACTTTTTGATCTTCTGCCAGAAGTCTCAGTTACAGTTTGATACACTTCGTCGTGCCAAGTATTCCTCCATGATGATCCTCTACCATCTACACAATCCTAATGTGTTGACTCAAAATGAACACCAGTTGACTCAAAATTGTAATCGTTCAACACCAGTATATCAATCTGGGAATCAGGAGTCAAATGAGAAAATGATGGTGAAACTGATGAACGTTTTGAAGCATGCATCTCAATGCCGCCGCCGCGCAAGTAATGCTGAGCCATGCTCTTATCCAAACTGTTCTCAAATCAAGAAGCTGTTCTATCATGCCAGTAAGTGTGAAATTCGAGCTAATCGAGGCTGCCAGCATTGTAAAAAGATATGGTTTATACTAACTGCTCACTCCAGAAATTGCAAAGACTCGGAATGTAGAATACCACGCTGCAGTGATCTAAAGAAGCATTTAGAAAAGAGATCAAAGCAGTCTGAATCTTGCCGTAGAGCTGAAGTTTTGGAAGCAGTCATTGGCCAATGA

Protein sequence

>MsaT030908.1

MLAKGGNTSSVVSNISRKRCFDELSNQVGFSTDWRYHPEMVRKRYDQSIHKTIPPKVAVTLIDSFRRDQIEEHISSLRKESDQITSEDQAGIDANTCNLCKRERLYFAKVPLFCLCCGVRIKKIYFCTKEEEFVAQGCICSECYKTFKGENVEINGTFISKRNLAKRNNDEVIEEPWVECNKCKRWQHQICALYNKKADLDCSAEYICPLCRLKEIKNRMHVPKAANFGAKDLTRTVLSDHLEKRLFKRLMQERKNWEKDEVLAAESLSIREVLSVDKQLKVNKQFLDIIPEENYPTEFSYRSRVILLFQKIEGVDVCIFGMYVQEFGSECGTPNQRCVYISYLDSVKYFRPKRRTKSGEALRTFIYHEILIGYLDFCKERGFSTCYIWACPPKKGDDYILYCHPKEQKTPKNHKLRHWYLSMLKKANEENIVVGLTNVYDHFFVPTEKRKSKVTVSRLPYFDGDWWCGNAMVVAKTLEKESRADYEKLLKQVSNRTVKDMGHAKPSKDILVMQKVGQNILPTRENFLVAHLRYSCMHCREVIVSGKRWFCTECKNFQECERCHSSENHTLKNGEVHTLCQANVDDIPSDTKCNDIVLESGLFENRDNFLIFCQKSQLQFDTLRRAKYSSMMILYHLHNPNVLTQNEHQLTQNCNRSTPVYQSGNQESNEKMMVKLMNVLKHASQCRRRASNAEPCSYPNCSQIKKLFYHASKCEIRANRGCQHCKKIWFILTAHSRNCKDSECRIPRCSDLKKHLEKRSKQSESCRRAEVLEAVIGQ*