AlfalfaGEDB | MsaG031022

M. sativa ssp. caerulea / MsaG031022

KEGG: K09264
GO: GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031022	sp\|Q8LLR2\|MADS2_VITVI	78.486	251	46	3	1	250	1	244	1.59e-142	402

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031022	tr\|A0A072U5X0\|A0A072U5X0_MEDTR	100.000	250	0	0	1	250	1	250	0.0	519

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TFs/TRs:

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Gene ID	Type	Classification
MsaG031022	TF	MADS-MIKC

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000005	MsaG031022	0.847280	2.411825e-59	1.192165e-56
MsaG000479	MsaG031022	0.801052	1.808525e-48	2.503907e-46
MsaG000553	MsaG031022	0.803713	5.148709e-49	7.576404e-47
MsaG000842	MsaG031022	0.849061	7.813893e-60	4.101633e-57
MsaG001223	MsaG031022	0.805487	2.205021e-49	3.380905e-47
MsaG001772	MsaG031022	0.841410	8.967472e-58	3.659752e-55
MsaG001828	MsaG031022	0.803367	6.070860e-49	8.861916e-47
MsaG002209	MsaG031022	0.807306	9.154796e-50	1.465236e-47
MsaG002290	MsaG031022	0.864656	2.073694e-64	1.932407e-61
MsaG002405	MsaG031022	0.813569	4.128551e-51	7.699218e-49

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031022	MtrunA17_Chr6g0455511	100.000	250	0	0	1	250	1	250	0.0	519
MsaG031022	MtrunA17_Chr7g0220111	87.698	252	26	4	1	250	1	249	3.51e-161	446
MsaG031022	MtrunA17_Chr3g0122251	65.759	257	68	6	1	249	1	245	2.10e-110	318
MsaG031022	MtrunA17_Chr5g0420091	63.470	219	75	2	1	218	1	215	2.30e-97	283
MsaG031022	MtrunA17_Chr4g0061671	66.667	174	57	1	1	174	1	173	3.14e-79	236
MsaG031022	MtrunA17_Chr8g0351051	50.000	256	117	7	1	250	1	251	2.28e-72	221
MsaG031022	MtrunA17_Chr4g0061691	60.355	169	66	1	1	168	1	169	7.75e-63	196
MsaG031022	MtrunA17_Chr8g0377551	55.729	192	67	7	63	249	1	179	1.26e-58	184
MsaG031022	MtrunA17_Chr8g0366231	45.374	227	114	3	1	226	1	218	8.84e-57	181
MsaG031022	MtrunA17_Chr6g0474371	50.838	179	86	1	1	177	1	179	2.36e-54	173

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031022	AT3G02310.1	73.228	254	60	4	1	250	1	250	1.62e-133	377
MsaG031022	AT5G15800.1	74.609	256	54	5	1	250	1	251	1.80e-125	356
MsaG031022	AT5G15800.2	73.004	263	57	5	1	250	1	262	2.29e-125	357
MsaG031022	AT3G02310.2	82.486	177	30	1	1	176	1	177	3.41e-102	295
MsaG031022	AT1G24260.1	62.257	257	75	4	1	249	1	243	3.37e-101	295
MsaG031022	AT1G24260.2	62.016	258	75	4	1	249	1	244	5.33e-101	294
MsaG031022	AT1G24260.3	61.265	253	71	3	1	249	1	230	1.19e-94	278
MsaG031022	AT2G03710.1	54.406	261	105	3	1	250	1	258	1.05e-93	276
MsaG031022	AT2G03710.2	54.406	261	104	4	1	250	1	257	5.92e-92	271
MsaG031022	AT2G03710.3	68.023	172	54	1	1	171	1	172	5.43e-81	241

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Find 48 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGATCTTTGTCTATGA+AGG	0.464986	6:-18353514	MsaT031022.1:intron
AAACCAGTATAGGCAAACAT+GGG	0.672240	6:-18353186	MsaT031022.1:CDS
AACCTTCTTGGTGAAGACTT+AGG	0.497236	6:-18354330	MsaT031022.1:CDS
AATCTCTTCAAAGGACTCAA+AGG	0.546223	6:-18354455	MsaT031022.1:intron
AATGTTGGATTGCACTCCAA+AGG	0.620049	6:+18353101	None:intergenic
ACAAAGCTTCTTTCAGCCTT+TGG	0.321218	6:-18353117	MsaT031022.1:CDS
ACATTTGCAAAGAGAAGAAA+TGG	0.424187	6:-18356733	MsaT031022.1:CDS
ACTAAATTTGAATACCTTGG+TGG	0.499386	6:+18354239	None:intergenic
ACTCAAGCTCAACAAGTTAA+TGG	0.276163	6:-18352509	MsaT031022.1:CDS
AGCTGATCTGATGCTACTGG+AGG	0.648548	6:+18352542	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	18352484	18356812	18352484	ID=MsaG031022
Chr6	mRNA	18352484	18356812	18352484	ID=MsaT031022.1;Parent=MsaG031022
Chr6	exon	18352484	18352583	18352484	ID=MsaT031022.1.exon8;Parent=MsaT031022.1
Chr6	CDS	18352484	18352583	18352484	ID=cds.MsaT031022.1;Parent=MsaT031022.1
Chr6	exon	18353092	18353234	18353092	ID=MsaT031022.1.exon7;Parent=MsaT031022.1
Chr6	CDS	18353092	18353234	18353092	ID=cds.MsaT031022.1;Parent=MsaT031022.1
Chr6	exon	18353515	18353556	18353515	ID=MsaT031022.1.exon6;Parent=MsaT031022.1
Chr6	CDS	18353515	18353556	18353515	ID=cds.MsaT031022.1;Parent=MsaT031022.1
Chr6	exon	18353636	18353677	18353636	ID=MsaT031022.1.exon5;Parent=MsaT031022.1
Chr6	CDS	18353636	18353677	18353636	ID=cds.MsaT031022.1;Parent=MsaT031022.1
Chr6	exon	18354254	18354353	18354254	ID=MsaT031022.1.exon4;Parent=MsaT031022.1
Chr6	CDS	18354254	18354353	18354254	ID=cds.MsaT031022.1;Parent=MsaT031022.1
Chr6	exon	18354456	18354517	18354456	ID=MsaT031022.1.exon3;Parent=MsaT031022.1
Chr6	CDS	18354456	18354517	18354456	ID=cds.MsaT031022.1;Parent=MsaT031022.1
Chr6	exon	18354842	18354920	18354842	ID=MsaT031022.1.exon2;Parent=MsaT031022.1
Chr6	CDS	18354842	18354920	18354842	ID=cds.MsaT031022.1;Parent=MsaT031022.1
Chr6	exon	18356628	18356812	18356628	ID=MsaT031022.1.exon1;Parent=MsaT031022.1
Chr6	CDS	18356628	18356812	18356628	ID=cds.MsaT031022.1;Parent=MsaT031022.1

Gene Sequence

>MsaT031022.1

ATGGGAAGAGGAAGAGTGGAATTGAAAAGGATAGAGAATAAGATAAACAGACAAGTAACATTTGCAAAGAGAAGAAATGGACTTCTTAAGAAAGCTTACGAATTATCTGTTCTTTGTGATGCTGAAGTTGCTCTTATTATCTTCTCCAATAGAGGCAAGCTTTATGAGTTTTGTAGCAGTCCTAGCATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGTGCAGTAGAAGTTAACAAACCTGCCAAAGAGCTTGAGAGCAGTTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAAGGACTCAAAGAAACCTTCTTGGTGAAGACTTAGGTCCATTAGGTACCAAAGATCTTGAGCAGCTTGAACGCCAACTTGATTCATCTCTCAAGCAAGTCAGGTCCACCAAGACTCAATTCATGCTGGACCAATTAGCTGATCTTCAAAATAAGGAGCATATGTTGGTAGAAGCAAACAGATCTTTGTCTATGAAGCTGGAAGAGATCAATATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGTGATCAAAGTATGGCATATGGTAATCAAAATGCTCACTCACAAAGCTTCTTTCAGCCTTTGGAGTGCAATCCAACATTGCAGATAGGGACTGATTACAGGTACAGTCCTCCAGTAGCATCAGATCAGCTAACTGCAACAACTCAAGCTCAACAAGTTAATGGATTTATTCCTGGATGGATGCTTTGA

Protein sequence

>MsaT031022.1

MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSMLKTLDRYQKCSYGAVEVNKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLGTKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEHMLVEANRSLSMKLEEININSRNQYRQTWEAGDQSMAYGNQNAHSQSFFQPLECNPTLQIGTDYRYSPPVASDQLTATTQAQQVNGFIPGWML*