AlfalfaGEDB | MsaG031182

M. sativa ssp. caerulea / MsaG031182

KEGG: K08819
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031182	AES74781.2	94.712	624	14	2	1	622	1	607	0.0	1221

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031182	sp\|B5X564\|CDC2C_ARATH	54.223	592	201	12	1	578	1	536	0.0	611

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031182	tr\|G7KLB8\|G7KLB8_MEDTR	94.712	624	14	2	1	622	1	607	0.0	1221

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031182	MtrunA17_Chr6g0453711	94.703	623	14	2	1	621	1	606	0.0	1218
MsaG031182	MtrunA17_Chr7g0218071	64.322	597	175	12	1	578	1	578	0.0	733
MsaG031182	MtrunA17_Chr4g0061141	59.635	493	178	2	65	557	60	531	0.0	603
MsaG031182	MtrunA17_Chr2g0317501	64.267	375	132	1	71	443	95	469	0.0	533
MsaG031182	MtrunA17_Chr2g0286421	63.102	374	136	1	78	449	70	443	2.79e-179	519
MsaG031182	MtrunA17_Chr7g0273601	55.134	448	190	2	1	444	1	441	3.70e-179	520
MsaG031182	MtrunA17_Chr4g0066691	62.228	368	139	0	77	444	71	438	5.34e-177	513
MsaG031182	MtrunA17_Chr1g0191221	64.589	353	125	0	70	422	82	434	5.82e-177	514
MsaG031182	MtrunA17_Chr3g0131861	58.656	387	156	1	45	427	28	414	2.37e-173	504
MsaG031182	MtrunA17_Chr2g0324461	58.824	374	152	1	72	443	103	476	1.98e-170	501

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG031182	AT5G39420.1	54.223	592	201	12	1	578	1	536	611
MsaG031182	AT1G74330.1	53.445	595	225	13	1	571	1	567	589
MsaG031182	AT1G74330.2	53.445	595	225	13	1	571	1	567	589
MsaG031182	AT1G74330.3	53.445	595	225	13	1	571	1	567	589
MsaG031182	AT1G18670.2	56.814	521	195	8	64	575	85	584	583
MsaG031182	AT1G18670.1	56.814	521	195	8	64	575	85	584	583
MsaG031182	AT1G18670.3	56.814	521	195	8	64	575	85	584	582
MsaG031182	AT3G01085.3	49.758	621	237	13	1	593	1	574	564
MsaG031182	AT3G01085.1	49.758	621	237	13	1	593	1	574	564
MsaG031182	AT3G01085.2	49.758	621	237	13	1	593	1	574	564

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Find 122 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTAAATGGGTTGCAT+TGG	0.459415	6:+21545555	None:intergenic
AAAGGGCCATTCTGGTTTGG+TGG	0.445352	6:+21545653	MsaT031182.1:CDS
AACCTCAGATATTAGAGCTG+AGG	0.613656	6:-21547729	None:intergenic
AACCTCTACGATTTCTCCGA+CGG	0.617146	6:-21545619	None:intergenic
AAGAAGAAAATGGTGCATAT+TGG	0.370161	6:+21549387	MsaT031182.1:CDS
AAGAAGTAAAATTAGTGCAT+TGG	0.479827	6:+21549097	MsaT031182.1:CDS
AAGGTCATGAAGATACATCC+AGG	0.588209	6:+21548027	MsaT031182.1:CDS
AATATCTTGTTGAACAATGA+AGG	0.493850	6:+21547086	MsaT031182.1:CDS
AATGGTGCATATTGGAATGA+CGG	0.656211	6:+21549395	MsaT031182.1:CDS
ACCTAATCAAAGGGTTTCCA+TGG	0.464168	6:+21549151	MsaT031182.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	21545564	21549463	21545564	ID=MsaG031182
Chr6	mRNA	21545564	21549463	21545564	ID=MsaT031182.1;Parent=MsaG031182
Chr6	exon	21545564	21545908	21545564	ID=MsaT031182.1.exon1;Parent=MsaT031182.1
Chr6	CDS	21545564	21545908	21545564	ID=cds.MsaT031182.1;Parent=MsaT031182.1
Chr6	exon	21546588	21546872	21546588	ID=MsaT031182.1.exon2;Parent=MsaT031182.1
Chr6	CDS	21546588	21546872	21546588	ID=cds.MsaT031182.1;Parent=MsaT031182.1
Chr6	exon	21547002	21547319	21547002	ID=MsaT031182.1.exon3;Parent=MsaT031182.1
Chr6	CDS	21547002	21547319	21547002	ID=cds.MsaT031182.1;Parent=MsaT031182.1
Chr6	exon	21547521	21547748	21547521	ID=MsaT031182.1.exon4;Parent=MsaT031182.1
Chr6	CDS	21547521	21547748	21547521	ID=cds.MsaT031182.1;Parent=MsaT031182.1
Chr6	exon	21547951	21548048	21547951	ID=MsaT031182.1.exon5;Parent=MsaT031182.1
Chr6	CDS	21547951	21548048	21547951	ID=cds.MsaT031182.1;Parent=MsaT031182.1
Chr6	exon	21548597	21548708	21548597	ID=MsaT031182.1.exon6;Parent=MsaT031182.1
Chr6	CDS	21548597	21548708	21548597	ID=cds.MsaT031182.1;Parent=MsaT031182.1
Chr6	exon	21548804	21549205	21548804	ID=MsaT031182.1.exon7;Parent=MsaT031182.1
Chr6	CDS	21548804	21549205	21548804	ID=cds.MsaT031182.1;Parent=MsaT031182.1
Chr6	exon	21549380	21549463	21549380	ID=MsaT031182.1.exon8;Parent=MsaT031182.1
Chr6	CDS	21549380	21549463	21549380	ID=cds.MsaT031182.1;Parent=MsaT031182.1

Gene Sequence

>MsaT031182.1

ATGGGTTGCATTGGTTCCAAACATGCTGTGGCGGGGAATATTTCTCCGGCACCGACCGTCGGAGAAATCGTAGAGGTTGTTCCTTCTTCAAAGGGCCATTCTGGTTTGGTGGTTTTGGATTCTAATTCTAAATCATCAACATATGAAAATAAGAATAGCAAGTTAAAGAAAAATAACTCAAAAAAAAGTAGTGGCTCATTCAGCTTTAGAATTGGTTTTACACAAAGATATGTTGAAGCTGAACAAAATGCTGCTGGTTGGCCTCCTTGGCTTACAGCTTCTGCAGCTGAAGCTGTTCAAGGTTGGATCCCTCTCAAAGCTGATGCTTATCAAAAGTTAGATAAGATTGGACAAGGTACATATAGCAGTGTGTTTCGAGCACGTGAAGTTGAAACTGGAAAAATGTTTGCTCTAAAAAAAGTGCGGTTTGATACTTTCCAAGCTGAGAGCATAAGGTTCATGGCAAGAGAAATAACAATTCTAAGGAGGCTTGACCATCCAAACATAATGAAGTTGGAAGGAATAATCACTTCTCGAATGTCAAATAGCATATACCTTGTGTTTGAATACATGGAACACGATCTTGCTGGTCTTGTATCTCGTTCTGACATTGTTTTCACCGACGCACAGATAAAATGCTACATGAGGCAACTATTAAGTGGACTCGAGCATTGTCATGTACGTGGAATCATGCATAGAGACATCAAAGTATCAAATATCTTGTTGAACAATGAAGGTGTTCTTAAGATAGCTGATTTTGGATTGGCAAACTCAATTAGTCCTAACAATAAGCAACCTTTAACAAGTCGTGTAGTAACTCTATGGTATCGTCCTCCTGAACTCTTGATGGGAGCAACCAACTATGGAGTATCGGTTGATCTTTGGAGTGTTGGATGTGTATTTGCAGAACTTTTTCTCGGGAAGCCTATTCTTAAGGGGAGAACTGAGGTTGAACAATTACACAAAATTTTCAAACTGTGTGGTTCTCCACCTGAGGAGTTCTGGAAAAAAACCAAGCTTCCTCATGCGACAATGTTCAAACCTCAAACTAACTACGAAAGCTCTCTTCGAGAGAGGTGCGTTGATTTTCCTGAATCGACCATAGGTTTACTCGAGACTTTACTGTCTATTGATCCTAGCAAGCGTGGAACCGCCTCCTCAGCTCTAATATCTGAGTACTTCAACACTAAGCCATATGCTTGTAATCCATCAAACCTGCCAAAGTATACACCTAGCAAAGAAATGGATGCTAAAGGTCATGAAGATACATCCAGGAAAAAGACCGGCGATAAAATGCGAGAGGCTGCAACATCTAGAAGGCAACAAAGACGGGTCTCTAAAGCTTTCCATGACCACAACAATTTTGTAAAATCAACTTCCAAAGAGGGAGTACTACTTATAGTTACTCATCTTAATTTTTTTGCGATCGAAGCCTTGAATATTTCTCAAAATGCTAGAAAAGATGATGGTAAAGCAAATCTTCCAAAGGGAAAAGGAGAAACTAAGCACAAAGATCACTCAAAGACTTCAATGGATGCAATGTTAGAGACTTCTCAAAAGTTGAATGTTGCTGATGGTAATGGCTATAGTGTACCAGTAAATGTCAAAGGAGTATCTAATGATTTTTCATGGACAAAAAGAAGAAAACAAGATGCATCATCAACACTATCAGATGGATCAAGAAGTAAAATTAGTGCATTGGATCCTAACTTTGCAAAAGGCACATATGATTTACCTAATCAAAGGGTTTCCATGGATTTTGATCCTAAGGAACTAATGAATGCCCAGGCCCAAAAAGAAGAAAATGGTGCATATTGGAATGACGGTGTGCGGCGTGCAGCTCGTAAATCAAGGTTTGGAAGAGGTAAATGA

Protein sequence

>MsaT031182.1

MGCIGSKHAVAGNISPAPTVGEIVEVVPSSKGHSGLVVLDSNSKSSTYENKNSKLKKNNSKKSSGSFSFRIGFTQRYVEAEQNAAGWPPWLTASAAEAVQGWIPLKADAYQKLDKIGQGTYSSVFRAREVETGKMFALKKVRFDTFQAESIRFMAREITILRRLDHPNIMKLEGIITSRMSNSIYLVFEYMEHDLAGLVSRSDIVFTDAQIKCYMRQLLSGLEHCHVRGIMHRDIKVSNILLNNEGVLKIADFGLANSISPNNKQPLTSRVVTLWYRPPELLMGATNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEEFWKKTKLPHATMFKPQTNYESSLRERCVDFPESTIGLLETLLSIDPSKRGTASSALISEYFNTKPYACNPSNLPKYTPSKEMDAKGHEDTSRKKTGDKMREAATSRRQQRRVSKAFHDHNNFVKSTSKEGVLLIVTHLNFFAIEALNISQNARKDDGKANLPKGKGETKHKDHSKTSMDAMLETSQKLNVADGNGYSVPVNVKGVSNDFSWTKRRKQDASSTLSDGSRSKISALDPNFAKGTYDLPNQRVSMDFDPKELMNAQAQKEENGAYWNDGVRRAARKSRFGRGK*