AlfalfaGEDB | MsaG031288

M. sativa ssp. caerulea / MsaG031288

KEGG: K09338
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031288	XP_004486568.1	43.765	409	119	9	148	445	304	712	1.11e-92	305
MsaG031288	XP_004486568.1	50.345	145	71	1	1	145	1	144	2.34e-32	142

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031288	sp\|Q9M9P4\|HDG8_ARATH	30.361	415	171	11	141	442	285	694	1.69e-40	157
MsaG031288	sp\|Q9M9P4\|HDG8_ARATH	33.333	138	92	0	7	144	5	142	6.67e-17	87.0

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031288	tr\|A0A1S2XAZ4\|A0A1S2XAZ4_CICAR	43.765	409	119	9	148	445	304	712	5.28e-93	305
MsaG031288	tr\|A0A1S2XAZ4\|A0A1S2XAZ4_CICAR	50.345	145	71	1	1	145	1	144	1.12e-32	142

TFs/TRs:

Gene ID	Type	Classification
MsaG031288	TF	HB-HD-ZIP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000382	MsaG031288	0.809956	2.502907e-50	4.269683e-48
MsaG000431	MsaG031288	0.802583	8.801080e-49	1.261778e-46
MsaG000456	MsaG031288	0.852766	7.144613e-61	4.263176e-58
MsaG000855	MsaG031288	0.802041	1.136674e-48	1.609467e-46
MsaG001084	MsaG031288	0.803325	6.193211e-49	9.031698e-47
MsaG001237	MsaG031288	0.808512	5.086341e-50	8.379970e-48
MsaG001279	MsaG031288	0.802270	1.020347e-48	1.452342e-46
MsaG001654	MsaG031288	0.835435	3.065387e-56	1.040278e-53
MsaG001672	MsaG031288	0.843812	2.078961e-58	9.162265e-56
MsaG002002	MsaG031288	0.814241	2.940445e-51	5.576630e-49
MsaG002013	MsaG031288	0.885179	2.188638e-71	5.058099e-68
MsaG002866	MsaG031288	0.836569	1.585738e-56	5.567634e-54
MsaG003210	MsaG031288	0.814352	2.779907e-51	5.286922e-49
MsaG003389	MsaG031288	0.822803	3.436113e-53	8.142927e-51
MsaG003394	MsaG031288	0.811763	1.020995e-50	1.820370e-48
MsaG004319	MsaG031288	0.827380	2.883273e-54	7.748686e-52
MsaG004373	MsaG031288	0.804925	2.887438e-49	4.369933e-47
MsaG005000	MsaG031288	0.848343	1.232683e-59	6.313961e-57
MsaG005154	MsaG031288	0.828325	1.712493e-54	4.725996e-52
MsaG005373	MsaG031288	0.860882	2.984073e-63	2.399319e-60
MsaG005435	MsaG031288	0.816225	1.070940e-51	2.135575e-49
MsaG005438	MsaG031288	0.809632	2.935431e-50	4.968578e-48
MsaG005442	MsaG031288	0.815396	1.635706e-51	3.193819e-49
MsaG005443	MsaG031288	0.838737	4.430204e-57	1.662525e-54
MsaG005444	MsaG031288	0.829128	1.097584e-54	3.098019e-52
MsaG005506	MsaG031288	0.843504	2.510880e-58	1.095770e-55
MsaG005508	MsaG031288	0.824502	1.380962e-53	3.426947e-51
MsaG005582	MsaG031288	0.846917	3.028197e-59	1.478757e-56
MsaG005864	MsaG031288	0.876523	2.717930e-68	4.183100e-65
MsaG006331	MsaG031288	0.819609	1.857399e-52	4.042799e-50
MsaG006518	MsaG031288	0.804141	4.200736e-49	6.242996e-47
MsaG006895	MsaG031288	0.801332	1.585785e-48	2.209589e-46
MsaG006902	MsaG031288	0.818808	2.821442e-52	6.013612e-50
MsaG006936	MsaG031288	0.806603	1.287364e-49	2.026603e-47
MsaG007326	MsaG031288	0.811462	1.186421e-50	2.099768e-48
MsaG007729	MsaG031288	0.823253	2.701275e-53	6.479820e-51
MsaG008461	MsaG031288	0.807326	9.068687e-50	1.452128e-47
MsaG008534	MsaG031288	0.871651	1.187824e-66	1.476484e-63
MsaG008535	MsaG031288	0.878426	5.948476e-69	9.981261e-66
MsaG008536	MsaG031288	0.876841	2.111951e-68	3.297237e-65
MsaG008542	MsaG031288	0.823047	3.015713e-53	7.193926e-51
MsaG008551	MsaG031288	0.842234	5.443900e-58	2.280705e-55
MsaG008552	MsaG031288	0.899179	5.863592e-77	2.858526e-73
MsaG008565	MsaG031288	0.803273	6.346894e-49	9.244907e-47
MsaG009138	MsaG031288	0.812679	6.460428e-51	1.178229e-48
MsaG009212	MsaG031288	0.806492	1.358334e-49	2.132716e-47
MsaG009501	MsaG031288	0.840514	1.536547e-57	6.095948e-55
MsaG009578	MsaG031288	0.839261	3.247667e-57	1.238743e-54
MsaG010031	MsaG031288	0.812268	7.936033e-51	1.432616e-48
MsaG010053	MsaG031288	0.815805	1.327136e-51	2.618335e-49
MsaG010508	MsaG031288	0.811996	9.092409e-51	1.630420e-48
MsaG010517	MsaG031288	0.803590	5.459479e-49	8.010718e-47
MsaG010894	MsaG031288	0.811547	1.137477e-50	2.017318e-48
MsaG010899	MsaG031288	0.808256	5.765679e-50	9.440867e-48
MsaG011275	MsaG031288	0.834607	4.947395e-56	1.637832e-53
MsaG011490	MsaG031288	0.801404	1.533006e-48	2.139520e-46
MsaG011806	MsaG031288	0.848549	1.081634e-59	5.579357e-57
MsaG012382	MsaG031288	0.849662	5.324379e-60	2.852807e-57
MsaG012422	MsaG031288	0.859919	5.820092e-63	4.510967e-60
MsaG012943	MsaG031288	0.819349	2.127628e-52	4.599993e-50
MsaG012944	MsaG031288	0.800156	2.749069e-48	3.729922e-46
MsaG012894	MsaG031288	0.803016	7.168039e-49	1.037927e-46
MsaG013657	MsaG031288	0.805686	2.004260e-49	3.087447e-47
MsaG013909	MsaG031288	0.822845	3.359437e-53	7.970149e-51
MsaG013993	MsaG031288	0.839835	2.307186e-57	8.960287e-55
MsaG014014	MsaG031288	0.800588	2.247002e-48	3.078747e-46
MsaG014110	MsaG031288	0.821749	6.018883e-53	1.386523e-50
MsaG014184	MsaG031288	0.856096	7.861312e-62	5.284738e-59
MsaG014421	MsaG031288	0.813099	5.231572e-51	9.641781e-49
MsaG014422	MsaG031288	0.809392	3.303381e-50	5.559030e-48
MsaG014439	MsaG031288	0.819077	2.451626e-52	5.262566e-50
MsaG014810	MsaG031288	0.876754	2.263555e-68	3.520286e-65
MsaG014953	MsaG031288	0.820737	1.027351e-52	2.303938e-50
MsaG014926	MsaG031288	0.812118	8.553620e-51	1.538377e-48
MsaG015188	MsaG031288	0.849118	7.535779e-60	3.963393e-57
MsaG015202	MsaG031288	0.806446	1.389045e-49	2.178601e-47
MsaG015269	MsaG031288	0.806040	1.689600e-49	2.624517e-47
MsaG016348	MsaG031288	0.800603	2.231091e-48	3.058015e-46
MsaG016685	MsaG031288	0.831051	3.744419e-55	1.116796e-52
MsaG016708	MsaG031288	0.825863	6.606337e-54	1.702020e-51
MsaG017013	MsaG031288	0.821585	6.565021e-53	1.505706e-50
MsaG017209	MsaG031288	0.820670	1.064512e-52	2.382986e-50
MsaG017329	MsaG031288	0.812405	7.410365e-51	1.342343e-48
MsaG017337	MsaG031288	0.813418	4.456013e-51	8.278252e-49
MsaG017718	MsaG031288	0.840997	1.149536e-57	4.630303e-55
MsaG017820	MsaG031288	0.855302	1.336835e-61	8.731595e-59
MsaG018380	MsaG031288	0.836138	2.038254e-56	7.064490e-54
MsaG019731	MsaG031288	0.857000	4.275083e-62	2.970054e-59
MsaG020029	MsaG031288	0.817967	4.365259e-52	9.103608e-50
MsaG020580	MsaG031288	0.818996	2.558011e-52	5.479227e-50
MsaG020874	MsaG031288	0.836689	1.477867e-56	5.207851e-54
MsaG020875	MsaG031288	0.827827	2.254917e-54	6.136575e-52
MsaG020983	MsaG031288	0.903054	1.202359e-78	7.371830e-75
MsaG020984	MsaG031288	0.887568	2.768623e-72	7.203823e-69
MsaG021286	MsaG031288	0.814451	2.643372e-51	5.039751e-49
MsaG021863	MsaG031288	0.815512	1.541935e-51	3.019482e-49
MsaG022010	MsaG031288	0.812765	6.186743e-51	1.130737e-48
MsaG022011	MsaG031288	0.810471	1.940122e-50	3.351560e-48
MsaG022370	MsaG031288	0.854499	2.280811e-61	1.447430e-58
MsaG022628	MsaG031288	0.846559	3.790201e-59	1.828705e-56
MsaG023339	MsaG031288	0.806809	1.165523e-49	1.843609e-47
MsaG023595	MsaG031288	0.846573	3.756677e-59	1.813415e-56
MsaG023743	MsaG031288	0.842699	4.104715e-58	1.745664e-55
MsaG023884	MsaG031288	0.862916	7.161916e-64	6.230079e-61
MsaG025148	MsaG031288	0.842047	6.097266e-58	2.539496e-55
MsaG025574	MsaG031288	0.813684	3.895828e-51	7.286046e-49
MsaG025575	MsaG031288	0.869965	4.238629e-66	4.905286e-63
MsaG025691	MsaG031288	0.837792	7.743899e-57	2.822039e-54
MsaG026714	MsaG031288	0.844983	1.010595e-58	4.628887e-56
MsaG026859	MsaG031288	0.814050	3.238453e-51	6.112383e-49
MsaG027800	MsaG031288	0.801705	1.331389e-48	1.870833e-46
MsaG028034	MsaG031288	0.801452	1.499204e-48	2.094617e-46
MsaG028374	MsaG031288	0.863858	3.669929e-64	3.312880e-61
MsaG028351	MsaG031288	0.821347	7.445272e-53	1.696890e-50
MsaG028442	MsaG031288	0.830977	3.904795e-55	1.162114e-52
MsaG028456	MsaG031288	0.805880	1.824787e-49	2.823903e-47
MsaG028457	MsaG031288	0.813984	3.348264e-51	6.309311e-49
MsaG028485	MsaG031288	0.895752	1.603401e-75	6.433863e-72
MsaG028489	MsaG031288	0.830883	4.116362e-55	1.221808e-52
MsaG028500	MsaG031288	0.904163	3.835375e-79	2.513068e-75
MsaG028501	MsaG031288	0.897530	2.923320e-76	1.297546e-72
MsaG028503	MsaG031288	0.858974	1.115167e-62	8.339619e-60
MsaG028715	MsaG031288	0.827838	2.240586e-54	6.099618e-52
MsaG028716	MsaG031288	0.864100	3.086154e-64	2.812946e-61
MsaG028929	MsaG031288	0.800250	2.631303e-48	3.577717e-46
MsaG029319	MsaG031288	0.811525	1.149862e-50	2.038169e-48
MsaG029320	MsaG031288	0.901257	7.439808e-78	4.098524e-74
MsaG030084	MsaG031288	0.841897	6.679286e-58	2.768646e-55
MsaG030332	MsaG031288	0.834295	5.918750e-56	1.941258e-53
MsaG030336	MsaG031288	0.829216	1.045031e-54	2.956991e-52
MsaG030471	MsaG031288	0.812278	7.895826e-51	1.425715e-48
MsaG030501	MsaG031288	0.811324	1.271041e-50	2.241939e-48
MsaG030507	MsaG031288	0.827865	2.207682e-54	6.014373e-52
MsaG031277	MsaG031288	0.892993	2.116827e-74	7.314399e-71
MsaG031295	MsaG031288	0.802057	1.127909e-48	1.597665e-46
MsaG031288	MsaG031624	0.808188	5.958361e-50	9.740422e-48
MsaG031288	MsaG032062	0.805701	1.989045e-49	3.065179e-47
MsaG031288	MsaG032147	0.821137	8.318198e-53	1.885421e-50
MsaG031288	MsaG032555	0.823355	2.558540e-53	6.154489e-51
MsaG031288	MsaG033022	0.842550	4.494354e-58	1.902290e-55
MsaG031288	MsaG033249	0.880346	1.251415e-69	2.295401e-66
MsaG031288	MsaG033812	0.809206	3.620175e-50	6.064638e-48
MsaG031288	MsaG034259	0.818759	2.893365e-52	6.159019e-50
MsaG031288	MsaG034827	0.884585	3.634052e-71	8.155433e-68
MsaG031288	MsaG034828	0.874672	1.163133e-67	1.648835e-64
MsaG031288	MsaG034829	0.888141	1.674534e-72	4.484402e-69
MsaG031288	MsaG034842	0.886661	6.106933e-72	1.518496e-68
MsaG031288	MsaG035057	0.813394	4.510203e-51	8.373881e-49
MsaG031288	MsaG036332	0.870914	2.076018e-66	2.500739e-63
MsaG031288	MsaG036377	0.809779	2.730389e-50	4.638036e-48
MsaG031288	MsaG037861	0.858322	1.742749e-62	1.271866e-59
MsaG031288	MsaG037865	0.804384	3.740575e-49	5.590527e-47
MsaG031288	MsaG037866	0.803922	4.662930e-49	6.894685e-47
MsaG031288	MsaG038269	0.814742	2.280973e-51	4.380705e-49
MsaG031288	MsaG038263	0.838955	3.893535e-57	1.471120e-54
MsaG031288	MsaG038983	0.829449	9.179981e-55	2.615159e-52
MsaG031288	MsaG039621	0.834648	4.831199e-56	1.601383e-53
MsaG031288	MsaG040077	0.824632	1.287853e-53	3.207074e-51
MsaG031288	MsaG040649	0.815768	1.352694e-51	2.666177e-49
MsaG031288	MsaG040800	0.826612	4.391630e-54	1.155174e-51
MsaG031288	MsaG040980	0.817803	4.750916e-52	9.866133e-50
MsaG031288	MsaG040982	0.829547	8.690865e-55	2.482830e-52
MsaG031288	MsaG041517	0.828812	1.307905e-54	3.659008e-52
MsaG031288	MsaG041685	0.848745	9.551846e-60	4.959924e-57
MsaG031288	MsaG041684	0.850686	2.757792e-60	1.530431e-57
MsaG031288	MsaG041686	0.840505	1.545248e-57	6.128650e-55
MsaG031288	MsaG041737	0.800170	2.731587e-48	3.707324e-46
MsaG031288	MsaG041899	0.827640	2.498873e-54	6.764869e-52
MsaG031288	MsaG041900	0.840984	1.158681e-57	4.665306e-55
MsaG031288	MsaG041901	0.853023	6.036835e-61	3.635288e-58
MsaG031288	MsaG041902	0.842558	4.472380e-58	1.893476e-55
MsaG031288	MsaG041903	0.820318	1.280779e-52	2.840881e-50
MsaG031288	MsaG041904	0.817161	6.618293e-52	1.351913e-49
MsaG031288	MsaG042382	0.853445	4.573188e-61	2.795164e-58
MsaG031288	MsaG044097	0.807639	7.787303e-50	1.256311e-47
MsaG031288	MsaG044336	0.829169	1.072673e-54	3.031260e-52
MsaG031288	MsaG044384	0.833433	9.703397e-56	3.102489e-53
MsaG031288	MsaG044439	0.866340	6.145961e-65	6.126515e-62
MsaG031288	MsaG044547	0.830117	6.323334e-55	1.836177e-52
MsaG031288	MsaG044919	0.869917	4.392826e-66	5.073026e-63
MsaG031288	MsaG045403	0.838161	6.227428e-57	2.295358e-54
MsaG031288	MsaG045445	0.806815	1.161943e-49	1.838201e-47
MsaG031288	MsaG045522	0.810628	1.795380e-50	3.113273e-48
MsaG031288	MsaG046040	0.809057	3.894365e-50	6.501082e-48
MsaG031288	MsaG046053	0.867649	2.360695e-65	2.482296e-62
MsaG031288	MsaG046120	0.899819	3.120107e-77	1.579534e-73
MsaG031288	MsaG046383	0.804817	3.040686e-49	4.590399e-47
MsaG031288	MsaG046588	0.841508	8.448307e-58	3.458591e-55
MsaG031288	MsaG046789	0.803850	4.824320e-49	7.121402e-47
MsaG031288	MsaG047054	0.808991	4.022977e-50	6.705009e-48
MsaG031288	MsaG002437	0.821843	5.727651e-53	1.322708e-50
MsaG031288	MsaG007590	0.804970	2.826113e-49	4.281578e-47
MsaG031288	MsaG009037	0.835300	3.315590e-56	1.120601e-53
MsaG031288	MsaG013401	0.809749	2.770865e-50	4.703331e-48
MsaG031288	MsaG013066	0.851251	1.915150e-60	1.083698e-57
MsaG031288	MsaG014180	0.818266	3.739340e-52	7.858424e-50
MsaG031288	MsaG015534	0.832811	1.383314e-55	4.342547e-53
MsaG031288	MsaG014275	0.864422	2.452484e-64	2.264240e-61
MsaG031288	MsaG011840	0.809185	3.657748e-50	6.124567e-48
MsaG031288	MsaG018815	0.823939	1.869691e-53	4.569089e-51
MsaG031288	MsaG018936	0.814593	2.459632e-51	4.706019e-49
MsaG031288	MsaG032410	0.865914	8.372178e-65	8.203792e-62
MsaG031288	MsaG032845	0.824402	1.457780e-53	3.607636e-51
MsaG031288	MsaG031316	0.823540	2.317010e-53	5.601285e-51
MsaG031288	MsaG033234	0.800434	2.414927e-48	3.297299e-46
MsaG031288	MsaG033325	0.855061	1.569854e-61	1.016394e-58
MsaG031288	MsaG030922	0.813570	4.127662e-51	7.697619e-49
MsaG031288	MsaG037271	0.831638	2.689931e-55	8.161554e-53
MsaG031288	MsaG038765	0.869612	5.515783e-66	6.288440e-63
MsaG031288	MsaG037384	0.806214	1.553571e-49	2.423325e-47
MsaG031288	MsaG037729	0.815853	1.295100e-51	2.558177e-49
MsaG031288	MsaG040703	0.805080	2.681031e-49	4.072149e-47
MsaG031288	MsaG037480	0.847411	2.220749e-59	1.102621e-56
MsaG031288	MsaG039736	0.807037	1.043410e-49	1.659363e-47
MsaG031288	MsaG035272	0.808710	4.617265e-50	7.643811e-48
MsaG031288	MsaG036984	0.830130	6.278007e-55	1.823685e-52

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031288	MtrunA17_Chr2g0292741	40.494	405	129	9	148	445	139	538	1.94e-86	274
MsaG031288	MtrunA17_Chr2g0292731	39.709	413	140	9	141	445	140	551	2.03e-85	271
MsaG031288	MtrunA17_Chr2g0292761	31.282	390	176	11	141	442	155	540	1.29e-49	177
MsaG031288	MtrunA17_Chr6g0481041	27.844	334	146	6	150	388	312	645	2.91e-34	135
MsaG031288	MtrunA17_Chr6g0481041	35.099	151	89	3	1	145	1	148	6.63e-21	95.9
MsaG031288	MtrunA17_Chr6g0460611	91.803	61	5	0	85	145	1	61	1.41e-33	121
MsaG031288	MtrunA17_Chr7g0246631	26.044	407	187	13	148	443	372	775	2.99e-28	118
MsaG031288	MtrunA17_Chr7g0246631	31.884	138	89	3	9	145	77	210	2.10e-13	72.4
MsaG031288	MtrunA17_Chr8g0350321	25.424	413	184	13	149	443	401	807	2.44e-27	115
MsaG031288	MtrunA17_Chr8g0350321	27.465	142	95	2	11	145	94	234	2.54e-11	65.9
MsaG031288	MtrunA17_Chr2g0322731	25.500	400	189	12	148	442	370	765	4.01e-26	111
MsaG031288	MtrunA17_Chr2g0322731	29.286	140	95	2	9	145	81	219	1.21e-14	76.3
MsaG031288	MtrunA17_Chr7g0224451	34.392	189	90	5	140	297	241	426	1.37e-24	105
MsaG031288	MtrunA17_Chr7g0224451	33.673	98	53	1	48	145	39	124	9.42e-12	66.6
MsaG031288	MtrunA17_Chr4g0024351	29.778	225	119	5	148	336	329	550	2.24e-24	106
MsaG031288	MtrunA17_Chr4g0024351	31.667	120	81	1	26	145	61	179	3.41e-15	78.2
MsaG031288	MtrunA17_Chr2g0331581	21.957	419	218	11	131	442	373	789	3.68e-23	102
MsaG031288	MtrunA17_Chr2g0331581	30.159	126	80	3	29	149	143	265	3.45e-11	65.5
MsaG031288	MtrunA17_Chr1g0203671	24.868	378	180	12	166	443	417	790	1.24e-22	101
MsaG031288	MtrunA17_Chr1g0203671	34.545	110	63	2	40	145	110	214	1.36e-12	70.1
MsaG031288	MtrunA17_Chr5g0410711	25.311	241	144	6	131	336	352	591	2.20e-18	88.2
MsaG031288	MtrunA17_Chr5g0410711	26.207	145	98	1	10	145	65	209	8.35e-13	70.5
MsaG031288	MtrunA17_Chr6g0472471	23.944	213	128	5	141	320	351	562	1.23e-13	73.2
MsaG031288	MtrunA17_Chr6g0472471	34.043	141	81	4	11	145	54	188	4.08e-13	71.6
MsaG031288	MtrunA17_Chr2g0304191	56.897	58	9	1	148	189	76	133	1.09e-12	65.1
MsaG031288	MtrunA17_Chr7g0224481	33.673	98	53	1	48	145	39	124	8.11e-12	66.2
MsaG031288	MtrunA17_Chr5g0394111	26.115	157	93	3	141	275	236	391	1.37e-11	66.6
MsaG031288	MtrunA17_Chr5g0419821	39.583	96	55	2	50	144	59	152	6.58e-11	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031288	AT3G03260.1	30.361	415	171	11	141	442	285	694	1.72e-41	157
MsaG031288	AT3G03260.1	33.333	138	92	0	7	144	5	142	6.78e-18	87.0
MsaG031288	AT3G03260.2	38.525	244	101	7	141	340	285	523	5.41e-38	145
MsaG031288	AT3G03260.2	33.333	138	92	0	7	144	5	142	7.96e-18	86.3
MsaG031288	AT1G34650.1	30.398	352	133	10	140	386	301	645	3.60e-34	135
MsaG031288	AT1G34650.1	32.787	122	80	2	33	153	24	144	3.72e-11	65.9
MsaG031288	AT5G17320.1	28.087	413	181	11	141	443	310	716	1.25e-32	131
MsaG031288	AT5G17320.1	30.000	130	91	0	16	145	17	146	3.85e-13	72.0
MsaG031288	AT1G17920.2	23.844	411	206	10	131	442	279	681	1.56e-31	128
MsaG031288	AT1G17920.2	41.837	98	54	2	49	145	45	140	2.16e-17	85.5
MsaG031288	AT1G17920.1	23.844	411	206	10	131	442	279	681	1.56e-31	128
MsaG031288	AT1G17920.1	41.837	98	54	2	49	145	45	140	2.16e-17	85.5
MsaG031288	AT1G73360.1	25.683	366	169	9	131	399	299	658	8.72e-31	125
MsaG031288	AT1G73360.1	37.975	158	85	6	23	173	30	181	1.79e-21	97.8
MsaG031288	AT1G05230.3	27.171	357	173	11	166	439	359	711	2.48e-30	124
MsaG031288	AT1G05230.3	30.657	137	91	2	9	145	51	183	2.41e-14	75.9
MsaG031288	AT4G21750.2	27.300	337	144	9	148	386	341	674	6.86e-30	123
MsaG031288	AT4G21750.2	30.657	137	90	2	13	145	46	181	2.34e-14	75.9
MsaG031288	AT4G21750.1	27.300	337	144	9	148	386	341	674	6.86e-30	123
MsaG031288	AT4G21750.1	30.657	137	90	2	13	145	46	181	2.34e-14	75.9
MsaG031288	AT4G21750.3	27.300	337	144	9	148	386	341	674	6.86e-30	123
MsaG031288	AT4G21750.3	30.657	137	90	2	13	145	46	181	2.34e-14	75.9
MsaG031288	AT4G21750.4	27.300	337	144	9	148	386	341	674	6.86e-30	123
MsaG031288	AT4G21750.4	30.657	137	90	2	13	145	46	181	2.34e-14	75.9
MsaG031288	AT4G04890.2	26.946	334	145	8	150	386	334	665	2.12e-29	122
MsaG031288	AT4G04890.2	31.111	135	91	2	11	145	49	181	4.25e-13	72.0
MsaG031288	AT4G04890.1	26.946	334	145	8	150	386	334	665	2.12e-29	122
MsaG031288	AT4G04890.1	31.111	135	91	2	11	145	49	181	4.25e-13	72.0
MsaG031288	AT3G61150.1	25.118	422	189	15	140	442	390	803	5.40e-28	117
MsaG031288	AT3G61150.1	29.630	135	93	2	11	145	97	229	2.66e-12	69.7
MsaG031288	AT1G79840.3	22.931	423	214	10	131	443	265	685	3.30e-27	115
MsaG031288	AT1G79840.3	28.571	161	105	3	15	173	33	185	1.03e-12	70.9
MsaG031288	AT1G79840.6	22.931	423	214	10	131	443	265	685	3.30e-27	115
MsaG031288	AT1G79840.6	28.571	161	105	3	15	173	33	185	1.03e-12	70.9
MsaG031288	AT1G79840.1	22.931	423	214	10	131	443	323	743	3.74e-27	115
MsaG031288	AT1G79840.1	28.571	161	105	3	15	173	91	243	1.25e-12	70.5
MsaG031288	AT1G79840.2	22.931	423	214	10	131	443	352	772	4.32e-27	115
MsaG031288	AT1G79840.2	28.571	161	105	3	15	173	120	272	1.24e-12	70.5
MsaG031288	AT2G32370.1	24.931	361	177	14	166	440	366	718	1.41e-23	104
MsaG031288	AT4G00730.1	24.694	409	185	15	148	443	401	799	7.76e-23	102
MsaG031288	AT4G00730.1	28.358	134	86	3	17	145	125	253	7.48e-11	65.1
MsaG031288	AT5G52170.3	24.390	369	183	12	166	443	316	679	8.17e-23	102
MsaG031288	AT5G52170.3	35.043	117	75	1	29	145	61	176	3.87e-13	72.0
MsaG031288	AT5G52170.1	24.390	369	183	12	166	443	316	679	8.17e-23	102
MsaG031288	AT5G52170.1	35.043	117	75	1	29	145	61	176	3.87e-13	72.0
MsaG031288	AT5G52170.2	24.599	374	181	13	166	443	316	684	2.40e-22	100
MsaG031288	AT5G52170.2	35.043	117	75	1	29	145	61	176	3.99e-13	72.0
MsaG031288	AT1G05230.8	32.461	191	106	6	166	336	359	546	3.57e-22	100
MsaG031288	AT1G05230.8	30.657	137	91	2	9	145	51	183	2.52e-14	75.9
MsaG031288	AT1G05230.4	32.461	191	106	6	166	336	359	546	3.57e-22	100
MsaG031288	AT1G05230.4	30.657	137	91	2	9	145	51	183	2.52e-14	75.9
MsaG031288	AT1G05230.9	32.461	191	106	6	166	336	359	546	3.57e-22	100
MsaG031288	AT1G05230.9	30.657	137	91	2	9	145	51	183	2.52e-14	75.9
MsaG031288	AT1G05230.10	32.461	191	106	6	166	336	359	546	3.57e-22	100
MsaG031288	AT1G05230.10	30.657	137	91	2	9	145	51	183	2.52e-14	75.9
MsaG031288	AT1G05230.7	32.461	191	106	6	166	336	359	546	3.57e-22	100
MsaG031288	AT1G05230.7	30.657	137	91	2	9	145	51	183	2.52e-14	75.9
MsaG031288	AT1G05230.11	32.461	191	106	6	166	336	359	546	3.57e-22	100
MsaG031288	AT1G05230.11	30.657	137	91	2	9	145	51	183	2.52e-14	75.9
MsaG031288	AT1G05230.2	32.461	191	106	6	166	336	359	546	3.57e-22	100
MsaG031288	AT1G05230.2	30.657	137	91	2	9	145	51	183	2.52e-14	75.9
MsaG031288	AT1G05230.6	32.461	191	106	6	166	336	359	546	3.57e-22	100
MsaG031288	AT1G05230.6	30.657	137	91	2	9	145	51	183	2.52e-14	75.9
MsaG031288	AT1G05230.5	32.461	191	106	6	166	336	359	546	3.57e-22	100
MsaG031288	AT1G05230.5	30.657	137	91	2	9	145	51	183	2.52e-14	75.9
MsaG031288	AT1G05230.1	32.461	191	106	6	166	336	359	546	3.57e-22	100
MsaG031288	AT1G05230.1	30.657	137	91	2	9	145	51	183	2.52e-14	75.9
MsaG031288	AT1G05230.12	32.461	191	106	6	166	336	359	546	4.01e-22	99.8
MsaG031288	AT1G05230.12	30.657	137	91	2	9	145	51	183	2.72e-14	75.5
MsaG031288	AT1G79840.4	25.610	246	142	5	131	336	323	567	6.01e-21	96.3
MsaG031288	AT1G79840.4	28.571	161	105	3	15	173	91	243	1.38e-12	70.1
MsaG031288	AT5G46880.3	25.926	243	142	6	131	336	392	633	5.88e-20	93.6
MsaG031288	AT5G46880.3	29.565	115	76	1	12	121	93	207	5.07e-13	71.6
MsaG031288	AT5G46880.1	25.926	243	142	6	131	336	392	633	5.88e-20	93.6
MsaG031288	AT5G46880.1	29.565	115	76	1	12	121	93	207	5.07e-13	71.6
MsaG031288	AT5G46880.2	25.926	243	142	6	131	336	392	633	5.88e-20	93.6
MsaG031288	AT5G46880.2	29.565	115	76	1	12	121	93	207	5.07e-13	71.6
MsaG031288	AT4G00730.2	33.099	142	74	4	148	271	401	539	1.19e-17	85.9
MsaG031288	AT4G00730.2	27.273	143	91	3	7	145	120	253	7.65e-11	64.7
MsaG031288	AT4G25530.1	28.000	200	111	7	162	336	325	516	1.39e-16	82.8
MsaG031288	AT1G79840.5	26.744	172	105	3	131	282	323	493	1.02e-14	76.6
MsaG031288	AT1G79840.5	28.571	161	105	3	15	173	91	243	1.77e-12	69.7
MsaG031288	AT4G17710.1	32.450	151	81	6	166	297	352	500	1.06e-14	77.0
MsaG031288	AT4G17710.1	28.333	120	73	1	26	145	89	195	2.22e-11	66.6

Find 88 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATACTATCTTGAATTAAATT+TGG	0.146907	6:-23647807	None:intergenic
ATTTGCTCCATACAAGTTAT+AGG	0.262490	6:-23647184	None:intergenic
CTACCCCTATTGCTCGTTCT+TGG	0.265207	6:+23646722	MsaT031288.1:CDS
AAAATACACATTCTCCCTTT+AGG	0.277748	6:+23665024	MsaT031288.1:CDS
TGATTTCGTTGGGCTTCATT+TGG	0.279004	6:-23628237	None:intergenic
AACATAGAAACTAATAGTTT+TGG	0.299658	6:-23647238	None:intergenic
ATGGAGCAAATAGTTGGATT+AGG	0.310699	6:+23647196	MsaT031288.1:CDS
CTTGACTTTCACAAGAATAT+TGG	0.311832	6:-23665193	None:intergenic
ACAACATTCTTCTCACTTCC+AGG	0.316941	6:-23664916	None:intergenic
TACCTATATAGGTATCTTAT+TGG	0.318357	6:+23647159	MsaT031288.1:CDS
TTCAAACACTTTGATTGTTT+CGG	0.318492	6:-23646448	None:intergenic
ATGGGAGGCGTCGGTGGGTC+TGG	0.334236	6:+23627671	MsaT031288.1:CDS
GAACCAAGATTTGATTCGTT+TGG	0.338011	6:-23628286	None:intergenic
AACCAAGATTTGATTCGTTT+GGG	0.354568	6:-23628285	None:intergenic
CGAGCAATAGGGGTAGTTTC+TGG	0.365372	6:-23646715	None:intergenic
ATTGGCACCTATAACTTGTA+TGG	0.388941	6:+23647177	MsaT031288.1:CDS
CTTCACTAGAAGCTAAAGTT+TGG	0.390737	6:-23665116	None:intergenic
GATTTCGTTGGGCTTCATTT+GGG	0.397275	6:-23628236	None:intergenic
TGTTTCCAAGAACGAGCAAT+AGG	0.402906	6:-23646727	None:intergenic
CTTAGCTAATTGATTTCGTT+GGG	0.409743	6:-23628247	None:intergenic
AGCCCAAACGAATCAAATCT+TGG	0.410805	6:+23628283	MsaT031288.1:CDS
ATCAATTAGCTAAGGAGGTT+GGG	0.412482	6:+23628256	MsaT031288.1:CDS
AATCTTGGTTCGATAATAAG+AGG	0.416511	6:+23628298	MsaT031288.1:CDS
CCTTAGCTAATTGATTTCGT+TGG	0.420498	6:-23628248	None:intergenic
TGGAGCAAATAGTTGGATTA+GGG	0.431042	6:+23647197	MsaT031288.1:CDS
AACGTTCATGCTCATGCATT+GGG	0.431887	6:-23628579	None:intergenic
ACTTGTATGGAGCAAATAGT+TGG	0.434593	6:+23647190	MsaT031288.1:CDS
AATTTAATTCAAGATAGTAT+TGG	0.449969	6:+23647810	MsaT031288.1:CDS
ACTTTAGCTTCTAGTGAAGA+TGG	0.455407	6:+23665120	MsaT031288.1:CDS
ACCATACACACTACCTATAT+AGG	0.457431	6:+23647148	MsaT031288.1:CDS
GTTTCCAAGAACGAGCAATA+GGG	0.459489	6:-23646726	None:intergenic
TATTCGATGGGAGGCGTCGG+TGG	0.460383	6:+23627665	MsaT031288.1:CDS
ATCTGAGACTGAGTTATCAA+TGG	0.465187	6:-23627702	None:intergenic
ACTAGTGAAGGCAAGCCAAC+TGG	0.465522	6:+23647861	MsaT031288.1:CDS
TTGAATAAAGATTCATGGCA+AGG	0.468284	6:+23628205	MsaT031288.1:intron
GACAAGTTGATGTCGGGGTA+TGG	0.470561	6:+23646659	MsaT031288.1:CDS
TTCATTGATTTAACATCACT+TGG	0.470784	6:-23664991	None:intergenic
ATTGCAGACAAGTTGATGTC+GGG	0.471647	6:+23646653	MsaT031288.1:CDS
TGCCAATAAGATACCTATAT+AGG	0.475325	6:-23647161	None:intergenic
AATCAATTAGCTAAGGAGGT+TGG	0.482913	6:+23628255	MsaT031288.1:CDS
AATACACAACAAAACCTAAA+GGG	0.483263	6:-23665038	None:intergenic
TTAATTCAAGATAGTATTGG+AGG	0.488183	6:+23647813	MsaT031288.1:CDS
TTCTCACTTCCAGGGATGAG+TGG	0.488995	6:-23664907	None:intergenic
GTTGGATTAGGGAGCTTGAG+AGG	0.489129	6:+23647208	MsaT031288.1:CDS
TATATAATATATGATCCAAC+AGG	0.492127	6:-23664964	None:intergenic
ACCTATATAGGTAGTGTGTA+TGG	0.493072	6:-23647149	None:intergenic
GAAAATTTCACATCACCTGT+TGG	0.493287	6:+23664949	MsaT031288.1:CDS
CTTATCCAGCCACTCATCCC+TGG	0.496057	6:+23664898	MsaT031288.1:intron
AAACGTTCATGCTCATGCAT+TGG	0.496436	6:-23628580	None:intergenic
CTAAATGAAAATTCAAGAGC+TGG	0.503632	6:+23665072	MsaT031288.1:CDS
TTTCATGCAAAAGATGAGAA+TGG	0.506914	6:+23628600	MsaT031288.1:CDS
ACAAGTTGATGTCGGGGTAT+GGG	0.517042	6:+23646660	MsaT031288.1:CDS
CCACTAAAACCTTTGTATTG+TGG	0.519309	6:-23627737	None:intergenic
TGAAAGTCAAGGATGAACTT+AGG	0.539319	6:+23665205	MsaT031288.1:CDS
GAATACACAACAAAACCTAA+AGG	0.544056	6:-23665039	None:intergenic
ATTCGATGGGAGGCGTCGGT+GGG	0.547865	6:+23627666	MsaT031288.1:CDS
CCAACTGGCATGGTTGTCGC+CGG	0.549357	6:+23647876	MsaT031288.1:CDS
AATTCGCGAGGTTGCACTAG+AGG	0.550636	6:-23646616	None:intergenic
CATTTCACGAATCATGCATC+CGG	0.551007	6:-23646755	None:intergenic
TGCTCATGCATTGGGAAAGG+AGG	0.551665	6:-23628571	None:intergenic
TCACAAGAATATTGGTCAAG+AGG	0.557860	6:-23665185	None:intergenic
CATTGCAGACAAGTTGATGT+CGG	0.561090	6:+23646652	MsaT031288.1:CDS
CGTTCTTGGAAACATCCCTC+CGG	0.562318	6:+23646736	MsaT031288.1:CDS
GGTTACTTGGGTTGAACATG+TGG	0.562906	6:+23647110	MsaT031288.1:intron
CGACATCAACTTGTCTGCAA+TGG	0.571303	6:-23646651	None:intergenic
GATGAAGCTTTCTCATCGAA+TGG	0.572810	6:+23647737	MsaT031288.1:CDS
CAACATTCTTCTCACTTCCA+GGG	0.576514	6:-23664915	None:intergenic
TAATAAGAGGGCTACACTGA+AGG	0.581057	6:+23628311	MsaT031288.1:CDS
ACGAAATCAATTAGCTAAGG+AGG	0.581875	6:+23628251	MsaT031288.1:CDS
GAATGACATGCTGAAAGAGA+AGG	0.584443	6:+23628624	MsaT031288.1:CDS
TCATGCTCATGCATTGGGAA+AGG	0.590182	6:-23628574	None:intergenic
GTTTATTCGATGGGAGGCGT+CGG	0.591995	6:+23627662	MsaT031288.1:CDS
TGAAGGCAAGCCAACTGGCA+TGG	0.597309	6:+23647866	MsaT031288.1:CDS
CCAACGAAATCAATTAGCTA+AGG	0.600046	6:+23628248	MsaT031288.1:CDS
TTTCCAAGAACGAGCAATAG+GGG	0.604583	6:-23646725	None:intergenic
CCGGCGACAACCATGCCAGT+TGG	0.605820	6:-23647876	None:intergenic
AAAATGGTTTATTCGATGGG+AGG	0.608024	6:+23627656	None:intergenic
CAATATTCTTGTGAAAGTCA+AGG	0.610201	6:+23665194	MsaT031288.1:CDS
TTCACGAATCATGCATCCGG+AGG	0.614413	6:-23646752	None:intergenic
AATGTTTAAGAATGTTTGCG+AGG	0.617702	6:+23646774	MsaT031288.1:CDS
GATAACAACTGTGGAAGCTG+TGG	0.624005	6:+23665149	MsaT031288.1:CDS
AGGGGTAGTTTCTGGTCGAG+AGG	0.633758	6:-23646707	None:intergenic
TCACGAATCATGCATCCGGA+GGG	0.640392	6:-23646751	None:intergenic
ATCTTGGTTCGATAATAAGA+GGG	0.641146	6:+23628299	MsaT031288.1:CDS
TTGCAGACAAGTTGATGTCG+GGG	0.656191	6:+23646654	MsaT031288.1:CDS
CAAAGCAGACCACAATACAA+AGG	0.659814	6:+23627728	MsaT031288.1:CDS
CGAATGATGTTAAATTCGCG+AGG	0.660114	6:-23646628	None:intergenic
TGGAACTATGATAACAACTG+TGG	0.679330	6:+23665140	MsaT031288.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	23627659	23665248	23627659	ID=MsaG031288
Chr6	mRNA	23627659	23665248	23627659	ID=MsaT031288.1;Parent=MsaG031288
Chr6	exon	23627659	23627783	23627659	ID=MsaT031288.1.exon1;Parent=MsaT031288.1
Chr6	CDS	23627659	23627783	23627659	ID=cds.MsaT031288.1;Parent=MsaT031288.1
Chr6	exon	23628215	23628332	23628215	ID=MsaT031288.1.exon2;Parent=MsaT031288.1
Chr6	CDS	23628215	23628332	23628215	ID=cds.MsaT031288.1;Parent=MsaT031288.1
Chr6	exon	23628454	23628645	23628454	ID=MsaT031288.1.exon3;Parent=MsaT031288.1
Chr6	CDS	23628454	23628645	23628454	ID=cds.MsaT031288.1;Parent=MsaT031288.1
Chr6	exon	23646411	23646461	23646411	ID=MsaT031288.1.exon4;Parent=MsaT031288.1
Chr6	CDS	23646411	23646461	23646411	ID=cds.MsaT031288.1;Parent=MsaT031288.1
Chr6	exon	23646589	23646795	23646589	ID=MsaT031288.1.exon5;Parent=MsaT031288.1
Chr6	CDS	23646589	23646795	23646589	ID=cds.MsaT031288.1;Parent=MsaT031288.1
Chr6	exon	23647111	23647257	23647111	ID=MsaT031288.1.exon6;Parent=MsaT031288.1
Chr6	CDS	23647111	23647257	23647111	ID=cds.MsaT031288.1;Parent=MsaT031288.1
Chr6	exon	23647732	23647899	23647732	ID=MsaT031288.1.exon7;Parent=MsaT031288.1
Chr6	CDS	23647732	23647899	23647732	ID=cds.MsaT031288.1;Parent=MsaT031288.1
Chr6	exon	23664907	23665248	23664907	ID=MsaT031288.1.exon8;Parent=MsaT031288.1
Chr6	CDS	23664907	23665248	23664907	ID=cds.MsaT031288.1;Parent=MsaT031288.1

Gene Sequence

>MsaT031288.1

ATGGTTTATTCGATGGGAGGCGTCGGTGGGTCTGGAGATAAAGCCATTGATAACTCAGTCTCAGATAATCAAAGCAGACCACAATACAAAGGTTTTAGTGGTTACCAGAGAAGTATACTTCAAAAATTCATGGCAAGGAACTCTAACCCAAATGAAGCCCAACGAAATCAATTAGCTAAGGAGGTTGGGCTTGAGCCCAAACGAATCAAATCTTGGTTCGATAATAAGAGGGCTACACTGAAGAAAAAACACATGAGAGAAGATAACAAAGCTCTTCATGCTGCAAGAAAAGAGCTCATTACTGAAAATATCGTTGTGAAAAAGATATTCAAGATGACATTTTGCGAAAGTTGTGGGGGTCCTCCTTTCCCAATGCATGAGCATGAACGTTTCATGCAAAAGATGAGAATGGAGAATGACATGCTGAAAGAGAAGGAGAGGACAAAGTTGTTCCCAACAATTGTATCAAAATCCGAAACAATCAAAGTATGTGAACAAATGCACATTCTGTCACCTCTAGTGCAACCTCGCGAATTTAACATCATTCGCCATTGCAGACAAGTTGATGTCGGGGTATGGGTGATAACAAATGTGTCATATGATTCCTCTCGACCAGAAACTACCCCTATTGCTCGTTCTTGGAAACATCCCTCCGGATGCATGATTCGTGAAATGTTTAAGAATGTTTGCGAGGTTACTTGGGTTGAACATGTGGAAGTTGATGATATGAACCATACACACTACCTATATAGGTATCTTATTGGCACCTATAACTTGTATGGAGCAAATAGTTGGATTAGGGAGCTTGAGAGGATGTCAGCCAAAACTATTAGTTTCTATAGTGTGATGAAGCTTTCTCATCGAATGGTTAAGATGTTCTATCAATGTTTAGTCATGTCAAGTAAACTGCATTTTCCAAATTTAATTCAAGATAGTATTGGAGGCGTCAAGATCTCCATTGAGAAAAACACTAGTGAAGGCAAGCCAACTGGCATGGTTGTCGCCGGTCCACTCATCCCTGGAAGTGAGAAGAATGTTGTGATTCTTCAAGAAAATTTCACATCACCTGTTGGATCATATATTATATATGCTCCAAGTGATGTTAAATCAATGAATGTTTCAACAAAAATACACATTCTCCCTTTAGGTTTTGTTGTGTATTCAACTGAAAAGCTAAATGAAAATTCAAGAGCTGGCACTTTGTTGATTCGATCTTGCCAAACTTTAGCTTCTAGTGAAGATGGAACTATGATAACAACTGTGGAAGCTGTGGCTAATCTCAGCAACCTCTTGACCAATATTCTTGTGAAAGTCAAGGATGAACTTAGGAAATCAAACTATTCAAAGTAG

Protein sequence

>MsaT031288.1

MVYSMGGVGGSGDKAIDNSVSDNQSRPQYKGFSGYQRSILQKFMARNSNPNEAQRNQLAKEVGLEPKRIKSWFDNKRATLKKKHMREDNKALHAARKELITENIVVKKIFKMTFCESCGGPPFPMHEHERFMQKMRMENDMLKEKERTKLFPTIVSKSETIKVCEQMHILSPLVQPREFNIIRHCRQVDVGVWVITNVSYDSSRPETTPIARSWKHPSGCMIREMFKNVCEVTWVEHVEVDDMNHTHYLYRYLIGTYNLYGANSWIRELERMSAKTISFYSVMKLSHRMVKMFYQCLVMSSKLHFPNLIQDSIGGVKISIEKNTSEGKPTGMVVAGPLIPGSEKNVVILQENFTSPVGSYIIYAPSDVKSMNVSTKIHILPLGFVVYSTEKLNENSRAGTLLIRSCQTLASSEDGTMITTVEAVANLSNLLTNILVKVKDELRKSNYSK*