Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG031449 | XP_013452181.1 | 96.162 | 469 | 18 | 0 | 1 | 469 | 194 | 662 | 0.0 | 931 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG031449 | sp|Q9FYR7|SCL8_ARATH | 52.697 | 482 | 183 | 12 | 9 | 469 | 183 | 640 | 2.55e-140 | 419 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG031449 | tr|A0A072U8U5|A0A072U8U5_MEDTR | 96.162 | 469 | 18 | 0 | 1 | 469 | 194 | 662 | 0.0 | 931 |
Gene ID | Type | Classification |
---|---|---|
MsaG031449 | TF | GRAS |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG030529 | MsaG031449 | 0.977542 | 2.593151e-143 | 5.062163e-137 |
MsaG031094 | MsaG031449 | 0.968778 | 1.477246e-128 | 1.437409e-122 |
MsaG031445 | MsaG031449 | 0.982313 | 4.837124e-154 | 1.409815e-147 |
MsaG031456 | MsaG031449 | 0.989911 | 2.365010e-179 | 2.211931e-172 |
MsaG031460 | MsaG031449 | 0.962480 | 2.327257e-120 | 1.443897e-114 |
MsaG031449 | MsaG031536 | 0.986351 | 1.028862e-165 | 5.157749e-159 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG031449 | MtrunA17_Chr6g0468561 | 96.162 | 469 | 18 | 0 | 1 | 469 | 194 | 662 | 0.0 | 931 |
MsaG031449 | MtrunA17_Chr7g0236851 | 52.361 | 466 | 189 | 9 | 16 | 468 | 211 | 656 | 2.11e-151 | 446 |
MsaG031449 | MtrunA17_Chr3g0125811 | 36.534 | 479 | 246 | 14 | 20 | 469 | 121 | 570 | 1.34e-82 | 265 |
MsaG031449 | MtrunA17_Chr1g0159461 | 39.642 | 391 | 194 | 10 | 100 | 469 | 223 | 592 | 3.67e-78 | 254 |
MsaG031449 | MtrunA17_Chr2g0319091 | 34.156 | 486 | 262 | 15 | 17 | 469 | 119 | 579 | 1.46e-65 | 221 |
MsaG031449 | MtrunA17_Chr5g0447691 | 34.091 | 396 | 209 | 12 | 100 | 469 | 175 | 544 | 1.36e-62 | 212 |
MsaG031449 | MtrunA17_Chr3g0101141 | 35.052 | 388 | 216 | 11 | 100 | 469 | 173 | 542 | 5.77e-60 | 205 |
MsaG031449 | MtrunA17_Chr2g0290241 | 31.392 | 395 | 222 | 11 | 100 | 469 | 55 | 425 | 5.17e-59 | 200 |
MsaG031449 | MtrunA17_Chr4g0076091 | 32.383 | 386 | 228 | 10 | 100 | 468 | 173 | 542 | 5.14e-56 | 194 |
MsaG031449 | MtrunA17_Chr5g0445331 | 34.015 | 391 | 220 | 11 | 100 | 469 | 159 | 532 | 4.64e-55 | 192 |
MsaG031449 | MtrunA17_Chr4g0037781 | 52.850 | 193 | 77 | 4 | 42 | 229 | 2 | 185 | 4.70e-50 | 169 |
MsaG031449 | MtrunA17_Chr8g0376381 | 28.647 | 377 | 239 | 7 | 101 | 469 | 168 | 522 | 6.62e-37 | 142 |
MsaG031449 | MtrunA17_Chr3g0110971 | 29.771 | 393 | 229 | 12 | 101 | 469 | 218 | 587 | 8.50e-37 | 142 |
MsaG031449 | MtrunA17_Chr8g0357601 | 30.155 | 388 | 236 | 12 | 101 | 469 | 181 | 552 | 1.87e-35 | 138 |
MsaG031449 | MtrunA17_Chr2g0306641 | 27.848 | 395 | 262 | 9 | 84 | 469 | 107 | 487 | 5.88e-35 | 136 |
MsaG031449 | MtrunA17_Chr7g0224271 | 28.642 | 405 | 219 | 13 | 103 | 469 | 301 | 673 | 1.83e-33 | 134 |
MsaG031449 | MtrunA17_Chr4g0057891 | 30.102 | 392 | 232 | 15 | 101 | 469 | 148 | 520 | 2.16e-31 | 126 |
MsaG031449 | MtrunA17_Chr4g0037771 | 52.137 | 117 | 52 | 2 | 104 | 217 | 1 | 116 | 6.52e-31 | 115 |
MsaG031449 | MtrunA17_Chr4g0031711 | 24.740 | 384 | 264 | 8 | 100 | 468 | 359 | 732 | 6.72e-31 | 126 |
MsaG031449 | MtrunA17_Chr2g0328391 | 25.654 | 382 | 255 | 11 | 103 | 468 | 300 | 668 | 2.26e-30 | 124 |
MsaG031449 | MtrunA17_Chr4g0031741 | 25.131 | 382 | 253 | 10 | 103 | 468 | 285 | 649 | 1.75e-28 | 119 |
MsaG031449 | MtrunA17_Chr4g0031721 | 25.393 | 382 | 260 | 9 | 100 | 468 | 314 | 683 | 3.18e-27 | 115 |
MsaG031449 | MtrunA17_Chr2g0328381 | 25.072 | 347 | 228 | 8 | 138 | 468 | 310 | 640 | 2.91e-26 | 112 |
MsaG031449 | MtrunA17_Chr2g0328411 | 24.672 | 458 | 307 | 14 | 31 | 468 | 214 | 653 | 6.18e-26 | 111 |
MsaG031449 | MtrunA17_Chr4g0057291 | 32.222 | 270 | 162 | 10 | 208 | 468 | 404 | 661 | 1.92e-25 | 109 |
MsaG031449 | MtrunA17_Chr7g0238891 | 22.328 | 421 | 292 | 12 | 70 | 469 | 334 | 740 | 3.30e-25 | 109 |
MsaG031449 | MtrunA17_Chr2g0328341 | 24.053 | 449 | 303 | 11 | 37 | 468 | 210 | 637 | 2.09e-24 | 106 |
MsaG031449 | MtrunA17_Chr2g0328431 | 25.291 | 344 | 230 | 9 | 138 | 468 | 324 | 653 | 2.99e-24 | 106 |
MsaG031449 | MtrunA17_Chr5g0401421 | 25.472 | 424 | 254 | 11 | 98 | 468 | 31 | 445 | 5.07e-24 | 104 |
MsaG031449 | MtrunA17_Chr7g0245601 | 28.818 | 347 | 209 | 12 | 136 | 469 | 471 | 792 | 2.28e-23 | 103 |
MsaG031449 | MtrunA17_Chr4g0031701 | 21.990 | 382 | 273 | 8 | 100 | 466 | 252 | 623 | 1.04e-22 | 101 |
MsaG031449 | MtrunA17_Chr4g0031731 | 22.384 | 344 | 243 | 6 | 138 | 466 | 289 | 623 | 1.08e-22 | 101 |
MsaG031449 | MtrunA17_Chr2g0328401 | 28.125 | 224 | 148 | 5 | 201 | 415 | 387 | 606 | 3.14e-21 | 97.1 |
MsaG031449 | MtrunA17_Chr2g0328361 | 25.000 | 452 | 283 | 14 | 31 | 468 | 205 | 614 | 4.17e-21 | 96.3 |
MsaG031449 | MtrunA17_Chr4g0053901 | 24.289 | 457 | 284 | 11 | 64 | 468 | 21 | 467 | 6.15e-20 | 92.4 |
MsaG031449 | MtrunA17_Chr1g0183641 | 24.933 | 373 | 253 | 10 | 103 | 468 | 124 | 476 | 3.03e-19 | 90.1 |
MsaG031449 | MtrunA17_Chr2g0328371 | 25.941 | 239 | 163 | 5 | 184 | 415 | 16 | 247 | 6.01e-19 | 86.3 |
MsaG031449 | MtrunA17_Chr1g0200401 | 27.139 | 409 | 230 | 14 | 101 | 469 | 79 | 459 | 7.95e-19 | 89.0 |
MsaG031449 | MtrunA17_Chr2g0294461 | 30.357 | 280 | 157 | 12 | 208 | 469 | 326 | 585 | 9.10e-19 | 89.4 |
MsaG031449 | MtrunA17_Chr3g0085681 | 23.898 | 431 | 244 | 19 | 103 | 469 | 26 | 436 | 1.06e-18 | 88.2 |
MsaG031449 | MtrunA17_Chr4g0038761 | 28.239 | 301 | 183 | 13 | 179 | 469 | 165 | 442 | 1.62e-18 | 87.8 |
MsaG031449 | MtrunA17_Chr5g0401131 | 25.575 | 391 | 252 | 11 | 103 | 469 | 115 | 490 | 2.41e-18 | 87.4 |
MsaG031449 | MtrunA17_Chr4g0038851 | 24.561 | 399 | 228 | 12 | 135 | 469 | 80 | 469 | 8.06e-18 | 85.9 |
MsaG031449 | MtrunA17_Chr2g0294471 | 29.710 | 276 | 163 | 11 | 208 | 469 | 318 | 576 | 4.40e-17 | 84.0 |
MsaG031449 | MtrunA17_Chr5g0396491 | 22.374 | 438 | 257 | 11 | 101 | 469 | 55 | 478 | 1.61e-16 | 81.6 |
MsaG031449 | MtrunA17_Chr7g0270031 | 27.574 | 272 | 171 | 8 | 208 | 469 | 299 | 554 | 6.10e-16 | 80.5 |
MsaG031449 | MtrunA17_Chr3g0085361 | 29.213 | 178 | 106 | 6 | 303 | 469 | 182 | 350 | 7.34e-14 | 72.8 |
MsaG031449 | MtrunA17_Chr3g0114841 | 26.752 | 314 | 187 | 13 | 174 | 468 | 210 | 499 | 1.17e-13 | 73.2 |
MsaG031449 | MtrunA17_Chr5g0424131 | 24.627 | 402 | 246 | 15 | 101 | 468 | 120 | 498 | 6.75e-12 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG031449 | AT5G52510.1 | 52.697 | 482 | 183 | 12 | 9 | 469 | 183 | 640 | 2.60e-141 | 419 |
MsaG031449 | AT1G21450.1 | 37.076 | 472 | 239 | 14 | 20 | 469 | 158 | 593 | 6.59e-77 | 251 |
MsaG031449 | AT2G04890.1 | 34.817 | 382 | 218 | 10 | 100 | 469 | 51 | 413 | 3.17e-62 | 208 |
MsaG031449 | AT5G48150.1 | 36.061 | 391 | 209 | 10 | 100 | 469 | 120 | 490 | 2.34e-61 | 208 |
MsaG031449 | AT5G48150.4 | 36.061 | 391 | 209 | 10 | 100 | 469 | 120 | 490 | 2.34e-61 | 208 |
MsaG031449 | AT5G48150.2 | 36.061 | 391 | 209 | 10 | 100 | 469 | 120 | 490 | 2.34e-61 | 208 |
MsaG031449 | AT5G48150.3 | 36.061 | 391 | 209 | 10 | 100 | 469 | 120 | 490 | 2.34e-61 | 208 |
MsaG031449 | AT4G17230.1 | 33.506 | 385 | 226 | 9 | 100 | 469 | 156 | 525 | 2.99e-56 | 195 |
MsaG031449 | AT4G17230.2 | 33.506 | 385 | 226 | 9 | 100 | 469 | 156 | 525 | 2.99e-56 | 195 |
MsaG031449 | AT1G50600.3 | 33.333 | 390 | 220 | 10 | 100 | 469 | 157 | 526 | 4.90e-54 | 189 |
MsaG031449 | AT1G50600.2 | 33.333 | 390 | 220 | 10 | 100 | 469 | 232 | 601 | 2.25e-53 | 189 |
MsaG031449 | AT1G50600.1 | 33.333 | 390 | 220 | 10 | 100 | 469 | 228 | 597 | 2.44e-53 | 189 |
MsaG031449 | AT2G01570.1 | 30.607 | 379 | 233 | 10 | 101 | 469 | 223 | 581 | 1.07e-37 | 145 |
MsaG031449 | AT1G14920.1 | 29.288 | 379 | 238 | 10 | 101 | 469 | 171 | 529 | 8.53e-37 | 142 |
MsaG031449 | AT3G03450.1 | 32.000 | 300 | 186 | 6 | 176 | 469 | 258 | 545 | 2.02e-35 | 138 |
MsaG031449 | AT1G66350.1 | 28.469 | 418 | 266 | 12 | 64 | 469 | 110 | 506 | 8.20e-35 | 136 |
MsaG031449 | AT2G29060.2 | 26.450 | 431 | 280 | 13 | 65 | 468 | 234 | 654 | 2.16e-34 | 136 |
MsaG031449 | AT2G29060.1 | 26.450 | 431 | 280 | 13 | 65 | 468 | 271 | 691 | 2.30e-34 | 137 |
MsaG031449 | AT5G59450.1 | 25.250 | 400 | 273 | 8 | 85 | 469 | 210 | 598 | 6.42e-34 | 135 |
MsaG031449 | AT1G07530.1 | 25.000 | 468 | 310 | 15 | 29 | 468 | 310 | 764 | 1.04e-33 | 135 |
MsaG031449 | AT5G17490.1 | 29.443 | 377 | 239 | 11 | 103 | 469 | 157 | 516 | 2.55e-32 | 129 |
MsaG031449 | AT2G29065.1 | 26.753 | 385 | 253 | 11 | 103 | 468 | 253 | 627 | 9.80e-31 | 125 |
MsaG031449 | AT3G46600.2 | 23.885 | 381 | 268 | 8 | 100 | 469 | 2 | 371 | 7.24e-28 | 114 |
MsaG031449 | AT3G46600.1 | 24.074 | 378 | 265 | 8 | 103 | 469 | 213 | 579 | 1.16e-27 | 116 |
MsaG031449 | AT3G46600.3 | 24.074 | 378 | 265 | 8 | 103 | 469 | 181 | 547 | 1.68e-27 | 115 |
MsaG031449 | AT1G07520.1 | 24.359 | 390 | 269 | 10 | 96 | 468 | 312 | 692 | 1.62e-25 | 110 |
MsaG031449 | AT1G07520.3 | 24.359 | 390 | 269 | 10 | 96 | 468 | 313 | 693 | 1.81e-25 | 110 |
MsaG031449 | AT5G66770.1 | 30.347 | 346 | 212 | 11 | 138 | 469 | 254 | 584 | 2.86e-25 | 109 |
MsaG031449 | AT1G07520.2 | 24.359 | 390 | 269 | 10 | 96 | 468 | 148 | 528 | 3.03e-25 | 108 |
MsaG031449 | AT1G07520.4 | 24.359 | 390 | 269 | 10 | 96 | 468 | 148 | 528 | 3.03e-25 | 108 |
MsaG031449 | AT2G37650.1 | 23.846 | 390 | 256 | 11 | 100 | 469 | 345 | 713 | 4.55e-24 | 106 |
MsaG031449 | AT3G50650.1 | 32.343 | 303 | 174 | 14 | 184 | 469 | 254 | 542 | 5.58e-24 | 105 |
MsaG031449 | AT2G37650.2 | 23.846 | 390 | 256 | 11 | 100 | 469 | 333 | 701 | 6.21e-24 | 105 |
MsaG031449 | AT3G54220.1 | 30.405 | 296 | 176 | 12 | 180 | 468 | 377 | 649 | 7.62e-23 | 102 |
MsaG031449 | AT3G49950.1 | 26.154 | 390 | 257 | 13 | 100 | 468 | 28 | 407 | 2.36e-22 | 99.4 |
MsaG031449 | AT4G37650.1 | 26.633 | 398 | 246 | 12 | 103 | 469 | 147 | 529 | 1.03e-20 | 95.5 |
MsaG031449 | AT1G50420.1 | 32.258 | 155 | 94 | 3 | 321 | 469 | 330 | 479 | 1.23e-16 | 82.8 |
MsaG031449 | AT1G55580.1 | 24.080 | 299 | 204 | 8 | 184 | 469 | 157 | 445 | 5.33e-15 | 77.4 |
MsaG031449 | AT2G45160.1 | 25.258 | 388 | 253 | 13 | 101 | 469 | 270 | 639 | 6.52e-15 | 77.8 |
MsaG031449 | AT1G63100.2 | 26.552 | 290 | 189 | 11 | 139 | 415 | 314 | 592 | 1.87e-14 | 76.3 |
MsaG031449 | AT1G63100.1 | 26.552 | 290 | 189 | 11 | 139 | 415 | 289 | 567 | 2.35e-14 | 75.9 |
MsaG031449 | AT4G08250.1 | 26.774 | 310 | 191 | 13 | 176 | 468 | 186 | 476 | 3.28e-13 | 72.0 |
Find 100 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTGGGCCCGGACCTGGGCC+TGG | 0.226567 | 6:+26118561 | MsaT031449.1:CDS |
GAGACTTATCAGAATCTAAT+TGG | 0.254281 | 6:+26118543 | MsaT031449.1:CDS |
CGAGTTGACTCGCGAGTTAT+TGG | 0.292344 | 6:+26119244 | MsaT031449.1:CDS |
TTGTTTCAAGGTTGGTTTCA+TGG | 0.293135 | 6:+26118938 | MsaT031449.1:CDS |
ACCTGGGCCTGGGCCTGGTC+AGG | 0.310562 | 6:+26118572 | MsaT031449.1:CDS |
TGGGATTTGCTTTGGTTGGA+TGG | 0.327746 | 6:+26119748 | MsaT031449.1:CDS |
TTGGGCCCGGACCTGGGCCT+GGG | 0.329919 | 6:+26118562 | MsaT031449.1:CDS |
CCCGGACCTGGGCCTGGGCC+TGG | 0.330968 | 6:+26118567 | MsaT031449.1:CDS |
GAATCTGAATTCGATGAATT+CGG | 0.332765 | 6:+26118782 | MsaT031449.1:CDS |
ACCAGGCCCAGGCCCAGGTC+CGG | 0.345324 | 6:-26118568 | None:intergenic |
CACTCACGGTTGCTTCTGTT+TGG | 0.353225 | 6:+26119777 | MsaT031449.1:CDS |
ATTAAGTCGCGACTCAATAT+TGG | 0.361285 | 6:+26119674 | MsaT031449.1:CDS |
GAGTTGACTCGCGAGTTATT+GGG | 0.395299 | 6:+26119245 | MsaT031449.1:CDS |
CAAGCGGAGAAGTTAAGAAT+TGG | 0.398699 | 6:+26119179 | MsaT031449.1:CDS |
GGCGCGTGTTGCAGAGTCAT+GGG | 0.403439 | 6:+26119445 | MsaT031449.1:CDS |
GGAAAACTCGGTTTGTTTCA+AGG | 0.404689 | 6:+26118926 | MsaT031449.1:CDS |
AATCTAATTGGGCCCGGACC+TGG | 0.411924 | 6:+26118555 | MsaT031449.1:CDS |
GCCTGACCAGGCCCAGGCCC+AGG | 0.417077 | 6:-26118573 | None:intergenic |
GCGTGAGGGGTTTAAGTTGA+AGG | 0.417985 | 6:+26119091 | MsaT031449.1:CDS |
ATGGTGGGATTTGCTTTGGT+TGG | 0.418527 | 6:+26119744 | MsaT031449.1:CDS |
ATGGCGCGCAAGGATGAGTA+TGG | 0.425941 | 6:+26119607 | MsaT031449.1:CDS |
TCAAGCACAAGCTCAGAAAC+TGG | 0.431854 | 6:+26118596 | MsaT031449.1:CDS |
TGGCGCGTGTTGCAGAGTCA+TGG | 0.446031 | 6:+26119444 | MsaT031449.1:CDS |
GGGATTTGCTTTGGTTGGAT+GGG | 0.446689 | 6:+26119749 | MsaT031449.1:CDS |
TCCGTTGACACACTTTCATC+CGG | 0.449000 | 6:-26119323 | None:intergenic |
TAACGAGTCGCGAGTTAACT+CGG | 0.451482 | 6:+26119700 | MsaT031449.1:CDS |
CCAGGCCCAGGCCCAGGTCC+GGG | 0.452097 | 6:-26118567 | None:intergenic |
ATCTAATTGGGCCCGGACCT+GGG | 0.452655 | 6:+26118556 | MsaT031449.1:CDS |
GTATAAGCTGAATAGAATTC+CGG | 0.455999 | 6:+26119304 | MsaT031449.1:CDS |
CGCTTTATGTGACTCGGTCG+AGG | 0.459461 | 6:+26119478 | MsaT031449.1:CDS |
GAGAATGGTGGGATTTGCTT+TGG | 0.460359 | 6:+26119740 | MsaT031449.1:CDS |
CGCGCAAGGATGAGTATGGC+GGG | 0.461869 | 6:+26119611 | MsaT031449.1:CDS |
GCTTGTGCTTGAGCCTGACC+AGG | 0.466408 | 6:-26118585 | None:intergenic |
GTTGAAGGTTGTTGCGGTGG+CGG | 0.467280 | 6:+26119106 | MsaT031449.1:CDS |
ATCGCGTGAGGCGGCGCGTG+AGG | 0.468911 | 6:+26119076 | MsaT031449.1:CDS |
TCAACGGTTAGCGAATTTCA+TGG | 0.471865 | 6:+26118806 | MsaT031449.1:CDS |
GTTGAAATCGAGGATGAATC+CGG | 0.473635 | 6:+26118836 | MsaT031449.1:CDS |
GCTTGAGCCTGACCAGGCCC+AGG | 0.481659 | 6:-26118579 | None:intergenic |
CGCGCTAAAATCGCGTGAGG+CGG | 0.481708 | 6:+26119067 | MsaT031449.1:CDS |
GTTGTTGCGGTGGCGGAGAA+CGG | 0.484971 | 6:+26119113 | MsaT031449.1:CDS |
AGACTTATCAGAATCTAATT+GGG | 0.485068 | 6:+26118544 | MsaT031449.1:CDS |
CTCCCTCTTCAATCTTGACT+CGG | 0.486598 | 6:-26119511 | None:intergenic |
AACTCGGTTTGTTTCAAGGT+TGG | 0.489425 | 6:+26118930 | MsaT031449.1:CDS |
GCTCAAACCATGACCATGTC+CGG | 0.491270 | 6:+26118387 | None:intergenic |
TCAGTTGTTGCTGGAAAACT+CGG | 0.496636 | 6:+26118914 | MsaT031449.1:CDS |
TTGCTTTAGAGATCTTGAAC+AGG | 0.498596 | 6:+26118745 | MsaT031449.1:CDS |
TCGCGTGAGGCGGCGCGTGA+GGG | 0.500843 | 6:+26119077 | MsaT031449.1:CDS |
CTGTTATTACAACAAGTGAA+TGG | 0.505097 | 6:+26118517 | MsaT031449.1:CDS |
GAAGCTGCATTTGAAGAAAA+CGG | 0.506260 | 6:+26118981 | MsaT031449.1:CDS |
CTCTTCAATCTTGACTCGGT+CGG | 0.514145 | 6:-26119507 | None:intergenic |
CTCGAAGATAACGACGAAGA+AGG | 0.517103 | 6:+26118477 | MsaT031449.1:CDS |
CGCGTGAGGCGGCGCGTGAG+GGG | 0.518726 | 6:+26119078 | MsaT031449.1:CDS |
GATGACGTTGTTGATGAAGT+TGG | 0.523797 | 6:-26118630 | None:intergenic |
TGAAAATCCACCGGCTGTTG+CGG | 0.528761 | 6:+26118860 | MsaT031449.1:CDS |
TCGAAAATTGTGCAACTTGG+TGG | 0.535180 | 6:+26119538 | MsaT031449.1:CDS |
TCACACTCTTCTACAAGAGT+TGG | 0.538873 | 6:+26118443 | MsaT031449.1:CDS |
TTTAGAGATCTTGAACAGGT+TGG | 0.541908 | 6:+26118749 | MsaT031449.1:CDS |
TAACGACGAAGAAGGTGAAA+CGG | 0.546401 | 6:+26118485 | MsaT031449.1:CDS |
CTTGGTGGCTTGTGAAGGTA+GGG | 0.547488 | 6:+26119553 | MsaT031449.1:CDS |
TTATTCCGCTTTATGTGACT+CGG | 0.559717 | 6:+26119472 | MsaT031449.1:CDS |
GAAACTCGCGCCGCGTGTTG+TGG | 0.562154 | 6:+26119379 | MsaT031449.1:CDS |
TGAGTCGACTCAGTTGTTGC+TGG | 0.564846 | 6:+26118905 | MsaT031449.1:CDS |
TATCAGAATCTAATTGGGCC+CGG | 0.565651 | 6:+26118549 | MsaT031449.1:CDS |
AACGAGTCGCGAGTTAACTC+GGG | 0.568702 | 6:+26119701 | MsaT031449.1:CDS |
CGAAACAATTCCGCAACAGC+CGG | 0.574990 | 6:-26118870 | None:intergenic |
TCCGGATGAAAGTGTGTCAA+CGG | 0.577258 | 6:+26119322 | MsaT031449.1:CDS |
GACCGAGTCAAGATTGAAGA+GGG | 0.577730 | 6:+26119509 | MsaT031449.1:CDS |
ACTTGGTGGCTTGTGAAGGT+AGG | 0.578105 | 6:+26119552 | MsaT031449.1:CDS |
GTTTAAGTTGAAGGTTGTTG+CGG | 0.578524 | 6:+26119100 | MsaT031449.1:CDS |
CTCAGTGTGAAAGAAGAGAA+TGG | 0.580110 | 6:+26119725 | MsaT031449.1:CDS |
GCTGCAAATGCGATTTCAGA+AGG | 0.580818 | 6:+26118711 | MsaT031449.1:CDS |
GTCATCAACTTCTTCATCAG+CGG | 0.587327 | 6:+26118647 | MsaT031449.1:CDS |
GTGTGAAAGAAGAGAATGGT+GGG | 0.588009 | 6:+26119729 | MsaT031449.1:CDS |
TGCAACTTGGTGGCTTGTGA+AGG | 0.588412 | 6:+26119548 | MsaT031449.1:CDS |
CTCGACCGAGTCACATAAAG+CGG | 0.588841 | 6:-26119477 | None:intergenic |
TAAGTTGAAGGTTGTTGCGG+TGG | 0.592167 | 6:+26119103 | MsaT031449.1:CDS |
CGCCGCAAAAGTGTGTCGCG+TGG | 0.600212 | 6:-26119350 | None:intergenic |
TGGTGAGAGCGTTGAAATCG+AGG | 0.600312 | 6:+26118826 | MsaT031449.1:CDS |
AACAATTCCGCAACAGCCGG+TGG | 0.603851 | 6:-26118867 | None:intergenic |
CGACCGAGTCAAGATTGAAG+AGG | 0.620356 | 6:+26119508 | MsaT031449.1:CDS |
ATTCGATGAATTCGGATCAA+CGG | 0.621073 | 6:+26118790 | MsaT031449.1:CDS |
GCGCGTGTTGCAGAGTCATG+GGG | 0.623740 | 6:+26119446 | MsaT031449.1:CDS |
GTTGCGGTGGCGGAGAACGG+CGG | 0.627141 | 6:+26119116 | MsaT031449.1:CDS |
AAGGTAGGGATCGTGTCGAA+AGG | 0.628894 | 6:+26119567 | MsaT031449.1:CDS |
GCCGCGTGTTGTGGTTGTTG+TGG | 0.629120 | 6:+26119388 | MsaT031449.1:CDS |
GAATCCGGTTGAAAATCCAC+CGG | 0.633420 | 6:+26118851 | MsaT031449.1:CDS |
TCCACAACAACCACAACACG+CGG | 0.636009 | 6:-26119389 | None:intergenic |
TAGCGGTGGGTGAGATGTTG+AGG | 0.638637 | 6:+26119153 | MsaT031449.1:CDS |
GAGTCGAAAATTGTGCAACT+TGG | 0.647172 | 6:+26119535 | MsaT031449.1:CDS |
GCGCGCAAGGATGAGTATGG+CGG | 0.653133 | 6:+26119610 | MsaT031449.1:CDS |
TGAGATGTTGAGGCTTCAAG+CGG | 0.656124 | 6:+26119163 | MsaT031449.1:CDS |
TTGGATGGGAAGAACACTCA+CGG | 0.668699 | 6:+26119763 | MsaT031449.1:CDS |
GGATCGTGTCGAAAGGTGTG+AGG | 0.671431 | 6:+26119574 | MsaT031449.1:CDS |
TGATGATAGAATGATAGCGG+TGG | 0.676162 | 6:+26119139 | MsaT031449.1:CDS |
GCGCAAGGATGAGTATGGCG+GGG | 0.685055 | 6:+26119612 | MsaT031449.1:CDS |
TCACGCGCTAAAATCGCGTG+AGG | 0.692971 | 6:+26119064 | MsaT031449.1:CDS |
CGGTGATGATAGAATGATAG+CGG | 0.693239 | 6:+26119136 | MsaT031449.1:CDS |
GAGTCGCGACTTAATCGACT+CGG | 0.695155 | 6:-26119666 | None:intergenic |
AGTGTGAAAGAAGAGAATGG+TGG | 0.698819 | 6:+26119728 | MsaT031449.1:CDS |
GATGATAGAATGATAGCGGT+GGG | 0.718543 | 6:+26119140 | MsaT031449.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr6 | gene | 26118396 | 26119805 | 26118396 | ID=MsaG031449 |
Chr6 | mRNA | 26118396 | 26119805 | 26118396 | ID=MsaT031449.1;Parent=MsaG031449 |
Chr6 | exon | 26118396 | 26119805 | 26118396 | ID=MsaT031449.1.exon1;Parent=MsaT031449.1 |
Chr6 | CDS | 26118396 | 26119805 | 26118396 | ID=cds.MsaT031449.1;Parent=MsaT031449.1 |
Gene Sequence |
Protein sequence |