AlfalfaGEDB | MsaG031729

M. sativa ssp. caerulea / MsaG031729

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031729	XP_013452170.2	84.286	350	29	3	1	338	1	336	0.0	575

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031729	sp\|Q9T072\|BH025_ARATH	42.194	237	113	6	105	336	111	328	6.27e-44	156

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031729	tr\|A0A072UAR9\|A0A072UAR9_MEDTR	84.286	350	29	3	1	338	1	336	0.0	574

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TFs/TRs:

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Gene ID	Type	Classification
MsaG031729	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031729	MtrunA17_Chr6g0468491	83.232	328	29	3	23	338	1	314	0.0	531
MsaG031729	MtrunA17_Chr6g0468461	76.786	336	43	7	1	321	1	316	3.72e-167	469
MsaG031729	MtrunA17_Chr2g0307131	66.944	360	91	3	1	337	1	355	7.95e-159	448
MsaG031729	MtrunA17_Chr2g0307141	64.384	365	98	5	1	338	1	360	7.56e-148	421
MsaG031729	MtrunA17_Chr4g0033391	61.364	352	87	9	1	336	1	319	2.73e-132	380
MsaG031729	MtrunA17_Chr4g0033291	60.054	368	78	7	1	338	1	329	3.08e-131	377
MsaG031729	MtrunA17_Chr4g0033281	61.756	353	91	7	1	337	1	325	2.52e-130	375
MsaG031729	MtrunA17_Chr4g0054581	56.443	388	110	7	1	338	1	379	1.31e-122	357
MsaG031729	MtrunA17_Chr4g0054621	53.824	353	137	12	1	338	1	342	4.07e-111	327
MsaG031729	MtrunA17_Chr7g0225901	72.646	223	54	3	95	313	21	240	1.95e-106	311

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031729	AT4G37850.2	42.194	237	113	6	105	336	111	328	6.37e-45	156
MsaG031729	AT4G37850.1	42.194	237	113	6	105	336	111	328	6.37e-45	156
MsaG031729	AT2G22760.1	42.132	197	97	6	151	333	102	295	2.58e-39	141
MsaG031729	AT2G22750.3	33.616	354	172	13	7	328	3	325	4.20e-36	133
MsaG031729	AT2G22750.2	44.444	189	97	3	146	328	111	297	4.47e-36	132
MsaG031729	AT2G22750.5	44.444	189	97	3	146	328	135	321	6.04e-36	133
MsaG031729	AT2G22750.4	33.616	354	171	14	7	328	3	324	7.47e-35	130
MsaG031729	AT2G22750.1	44.444	189	96	4	146	328	111	296	8.83e-35	129
MsaG031729	AT2G22770.1	33.891	239	133	5	110	331	87	317	1.60e-33	126
MsaG031729	AT2G22760.2	41.477	176	87	5	151	313	102	274	9.74e-33	123

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Find 50 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTCTCGTACTCATCA+TGG	0.528225	6:+33951663	MsaT031729.1:CDS
AAACAACAATGTTTCACTTC+AGG	0.379077	6:+33951384	MsaT031729.1:CDS
AAATTATGGTAGAGATTCAA+AGG	0.513560	6:+33952176	MsaT031729.1:CDS
AAATTCAGGTTGCTTTCCTC+AGG	0.450905	6:-33951297	None:intergenic
AACAACAATGTTTCACTTCA+GGG	0.435505	6:+33951385	MsaT031729.1:CDS
AACTGAAAAGATGACTTAGA+TGG	0.568833	6:-33951558	None:intergenic
AATAACAGTGTCTTACCTTT+TGG	0.250719	6:+33952217	MsaT031729.1:CDS
AATGCTCTCATGAGATGACG+AGG	0.706550	6:-33952053	None:intergenic
AATTAGTAGTGGGTGAATTT+GGG	0.256712	6:-33951605	None:intergenic
AATTCAATGCTGCCATGCGT+AGG	0.603516	6:-33952572	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	33950764	33952608	33950764	ID=MsaG031729
Chr6	mRNA	33950764	33952608	33950764	ID=MsaT031729.1;Parent=MsaG031729
Chr6	exon	33950764	33950826	33950764	ID=MsaT031729.1.exon1;Parent=MsaT031729.1
Chr6	CDS	33950764	33950826	33950764	ID=cds.MsaT031729.1;Parent=MsaT031729.1
Chr6	exon	33951273	33951776	33951273	ID=MsaT031729.1.exon2;Parent=MsaT031729.1
Chr6	CDS	33951273	33951776	33951273	ID=cds.MsaT031729.1;Parent=MsaT031729.1
Chr6	exon	33951905	33952273	33951905	ID=MsaT031729.1.exon3;Parent=MsaT031729.1
Chr6	CDS	33951905	33952273	33951905	ID=cds.MsaT031729.1;Parent=MsaT031729.1
Chr6	exon	33952528	33952608	33952528	ID=MsaT031729.1.exon4;Parent=MsaT031729.1
Chr6	CDS	33952528	33952608	33952528	ID=cds.MsaT031729.1;Parent=MsaT031729.1

Gene Sequence

>MsaT031729.1

ATGGAAGAAATCAACAATACAACAATGAACGTATCATCAACCAACAGCTGGTTATCTGATTTGGAAATGGATGAATACAATTTATTTCCTGAGGAAAGCAACCTGAATTTCCTTGATACAGATGTGGTAGAGTTTCTCTCACATGACATAGGTAATGTATTCCAAGAACAAAACAAACAACAATGTTTCACTTCAGGGTGCACTCCCGCATCTCTTAGTAACTCATCAAGTTATGAAACAAATTTGGACTCTTTTGGCTTTGATTTTGATAAGCCGAATATGGAGCTGAAAACAATTGATCATAGCAACAAAATCAATGAAACTTTTTCACCAAAACTTTCTTCATCACCATCTAAGTCATCTTTTCAGTTTCAAATTCCATCTTTGGACAACACCCCAAATTCACCCACTACTAATTCCTCACAAAACTTGGAAACAAAAACCTCAAAGAGCAAAAGGTCTCGTACTCATCATGGTCAAGATCATATCATGGCTGAGAGAAAGAGAAGAGAGAAACTCACTCAGATCTTCATTGCTCTTGCGGCTCTTGTTCCTAACCTTAAGAAGGTGGACAAGTATTCTGTATTAGTTGACACTATCAAATACTTGAAAGAACTTAAAAAGCGTTTGAAATTTTTGGAAGAACAAAATGAGAAAACAAAAATAGAGTCACCGACAGTCTTGACCAAACTAGGCCTCTGCAACGATGATAACTCCTCGTCATCTCATGAGAGCATTGATTGTGTTGTTGATTTACCATTTCAAGTGGAAGCAAGAATCTTAGGAAAACATATGTTGATTCGGATCCAATGTCAAGAGCACAGGGGCCTTCTAGTTAAAATTATGGTAGAGATTCAAAGGTTTCAACTATTTGTTATCAATAACAGTGTCTTACCTTTTGGAGATTCTATCCTCGACATTACTATTATTGCTCATTTGGGTGAAGGCTACAATATGAGCATAAAGGAACTTGTGAAGAACCTACGCATGGCAGCATTGAATTTTATGTCATCATAA

Protein sequence

>MsaT031729.1

MEEINNTTMNVSSTNSWLSDLEMDEYNLFPEESNLNFLDTDVVEFLSHDIGNVFQEQNKQQCFTSGCTPASLSNSSSYETNLDSFGFDFDKPNMELKTIDHSNKINETFSPKLSSSPSKSSFQFQIPSLDNTPNSPTTNSSQNLETKTSKSKRSRTHHGQDHIMAERKRREKLTQIFIALAALVPNLKKVDKYSVLVDTIKYLKELKKRLKFLEEQNEKTKIESPTVLTKLGLCNDDNSSSSHESIDCVVDLPFQVEARILGKHMLIRIQCQEHRGLLVKIMVEIQRFQLFVINNSVLPFGDSILDITIIAHLGEGYNMSIKELVKNLRMAALNFMSS*