AlfalfaGEDB | MsaG031730

M. sativa ssp. caerulea / MsaG031730

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031730	XP_024641248.2	95.652	759	33	0	1	759	1	759	0.0	1513

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031730	sp\|Q9SY66\|FRS11_ARATH	45.186	644	344	4	42	683	43	679	0.0	596

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031730	tr\|A0A396JX52\|A0A396JX52_MEDTR	95.652	759	33	0	1	759	1	759	0.0	1513

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TFs/TRs:

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Gene ID	Type	Classification
MsaG031730	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031730	MtrunA17_Chr1g0198761	95.652	759	33	0	1	759	1	759	0.0	1513
MsaG031730	MtrunA17_Chr5g0431001	70.825	497	128	3	1	482	1	495	0.0	717
MsaG031730	MtrunA17_Chr2g0276841	46.635	624	320	5	48	667	71	685	0.0	613
MsaG031730	MtrunA17_Chr2g0294841	41.370	759	402	13	3	733	2	745	0.0	588
MsaG031730	MtrunA17_Chr2g0290391	45.195	666	328	9	14	663	22	666	0.0	566
MsaG031730	MtrunA17_Chr1g0202341	29.777	628	412	12	49	664	53	663	1.38e-80	271
MsaG031730	MtrunA17_Chr5g0448761	29.883	599	391	11	36	619	52	636	3.80e-78	267
MsaG031730	MtrunA17_Chr8g0363841	28.060	670	433	18	47	685	17	668	1.22e-73	252
MsaG031730	MtrunA17_Chr3g0080351	28.473	583	361	13	50	613	79	624	4.18e-71	249
MsaG031730	MtrunA17_Chr2g0329031	26.496	702	452	17	53	726	20	685	4.99e-71	247

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031730	AT1G10240.2	45.186	644	344	4	42	683	43	679	0.0	596
MsaG031730	AT1G10240.1	45.186	644	344	4	42	683	43	679	0.0	596
MsaG031730	AT5G28530.1	42.685	663	349	7	17	664	28	674	0.0	536
MsaG031730	AT5G28530.3	42.383	663	347	7	17	664	28	670	0.0	536
MsaG031730	AT5G28530.2	42.383	663	347	7	17	664	28	670	0.0	536
MsaG031730	AT5G28530.4	38.744	653	326	9	17	664	28	611	1.15e-147	446
MsaG031730	AT5G28530.5	38.438	653	324	9	17	664	28	607	3.57e-147	444
MsaG031730	AT4G38180.1	30.159	567	378	7	48	607	74	629	3.11e-77	265
MsaG031730	AT4G15090.1	28.621	573	380	11	50	611	54	608	3.13e-75	260
MsaG031730	AT4G15090.5	28.621	573	380	11	50	611	54	608	3.13e-75	260

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Find 115 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAAGGTCGACCAAA+AGG	0.507451	6:+33958436	MsaT031730.1:CDS
AAAACCATCATCAATGTGAT+TGG	0.437647	6:-33956291	None:intergenic
AAAGCGGCCTCCGTCACTTT+TGG	0.333584	6:-33958008	None:intergenic
AAAGGATCAAGGCTAAAAGG+AGG	0.688106	6:+33958454	MsaT031730.1:CDS
AAAGGTCCATGTTGTGGCTC+TGG	0.458551	6:-33956260	None:intergenic
AAGGTCGACCAAAAGGATCA+AGG	0.568587	6:+33958443	MsaT031730.1:CDS
AAGTCGTCAAGATGTAATTG+TGG	0.651128	6:+33956539	MsaT031730.1:CDS
AAGTGGAAGGTAAAAGGAAA+CGG	0.542859	6:+33956516	MsaT031730.1:CDS
AATCATCTTCACATTCTAAA+TGG	0.310029	6:-33957455	None:intergenic
AATCATTACGACATGCCACT+TGG	0.527488	6:+33957046	MsaT031730.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	33956176	33958735	33956176	ID=MsaG031730
Chr6	mRNA	33956176	33958735	33956176	ID=MsaT031730.1;Parent=MsaG031730
Chr6	exon	33956176	33957165	33956176	ID=MsaT031730.1.exon1;Parent=MsaT031730.1
Chr6	CDS	33956176	33957165	33956176	ID=cds.MsaT031730.1;Parent=MsaT031730.1
Chr6	exon	33957249	33957692	33957249	ID=MsaT031730.1.exon2;Parent=MsaT031730.1
Chr6	CDS	33957249	33957692	33957249	ID=cds.MsaT031730.1;Parent=MsaT031730.1
Chr6	exon	33957788	33958602	33957788	ID=MsaT031730.1.exon3;Parent=MsaT031730.1
Chr6	CDS	33957788	33958602	33957788	ID=cds.MsaT031730.1;Parent=MsaT031730.1
Chr6	exon	33958705	33958735	33958705	ID=MsaT031730.1.exon4;Parent=MsaT031730.1
Chr6	CDS	33958705	33958735	33958705	ID=cds.MsaT031730.1;Parent=MsaT031730.1

Gene Sequence

>MsaT031730.1

ATGTCATCGGAGGGAAGAAATGAGGCCATTGATGGGTCCTTGGAACATGAAGATGATGAAATAATAGATTCTCTGACCACTGTACCAGAGCCACAACATGGACCTTTGCCTCAAGCCAATCACATTGATGATGGTTTTCTTTATGAAGGAAAGGTATTTAACAGTGATGATGAGGCTTACAACTTTTACTGTTTGTTTGCGCGAAAAAATGGTTTTTCAATTAGACGTCATCATGTTTACAAATCTATTAAGAATCAGTCGGAGGATAATCCATTAGGTGTTTATAAAAGAGAGTTTGTTTGTCATCGTGCTGGTACGATTAACGCAGACAAAGATAATGAAGTGGAAGGTAAAAGGAAACGGAAGTCGTCAAGATGTAATTGTGGTGCAAAATTGTTGGTGAATATAACAACAATTAACTCTGAGAAAAAGTGGGTGGTGAAGTATTTTAATAATAATCATAACCATGAGTTATTAGATGATAAAGAGGTTAAATTTCTTCCTGCTTATCAAAGTATTCCAGCTATTGATCATGACCGTATTCTTTTGTTGTCAAAAGCTGGTTGTTCTGTTAGTTTGATAATTAGAGTGCTTGAGTTAGAGAAAAAAATAGATGCTGGAAATCTTCCATTTTTGGATAAAGACATTAGAAATTTCATTCAATCTCAAAGTGGTATTGGTAAAGAATTTGATGCTTCAAATGTTCTCAAATTATGTAAAAGTCTTAAAGATGCAGATAATGCATTTGAGTATGAATTTTCAATCGATGAAAATAACAAATTGGAGCATATTATTTGGGCATTTGGTGATTCAATTCGAGCATATGAAGCTTTCGGAGATGTGATTGTTTTTGATACCACTTATCGAATAAATCATTACGACATGCCACTTGGAATATGGGTTGGAGTCGATAATCATGGCAATTCCATTTTCTTTGGTTGTGTTCTATTGCAAAATGAGAAGATTTCTTCCTTTACATGGGCTATAAAGACTTTTCTTAGTTTTGTCAAAGGAAAATATCCACAAACAATTCTTACAGATCAAGATCCTGCAATGAAAGAAGCTATTGCAATGGAATTACCAAACACAAAACATGCATTTTGTATATGGCATATCCTGGCAAAGTTACCAACTTGGTTTTCTCTTCCATTAGGGTCGAGATATGATGATTTTAAAGATGAGTTTTATCGATTATACCATTTAGAATGTGAAGATGATTTTGGGAGGGAATGGAAATTGATGGTTGAAGAGTTTTGTCTTAGCAAGGATAACCATATTGTCTTGCTCTATTCGCTTCGTCAATTTTGGGCACTAGCTTATTTGAAGGACTTCTTTTTTGCTGGAATGACTACAACTGGACGTTCAGAATCTATAAATTCATATATAAAAAGATTCTTGGGAGCCAAAACAAGTCTGACTGATTTCATAAACCAATTGGGGTTCTTTGTTAACATTAGAAATCAAGCTGGAGAAGAAGCAAGAATGCGCCAAAAGTACCACAATCCTCGTATTAGAACGTGTTTTCCTATTGAGGAACATGTCGCATCTATTCTTACACCTTATGCCTTTAAGTTGATTCAACATGAGATTGAGTTGTCTACAAAATATGCGGCAACTAAAACTAATAATAGTGTATTCATTGTGCGACATCATACCAAAAGTGACGGAGGCCGCTTTGTAAGTTGGATACAAGAAAATGAATCAATCCATTGTTCTTGCAAGGAATTTGAATTTTCTGGGATATTATGTAGACATGCTTTTCGAGTGCTTGTGATGAAAAATTATTTTACCCTCCCTTCCAAGTATCTTCCTCTTCGTTGGAGACAAGAAACTTCATTGATTCCAACATCTAGTCACATGATTAACAACAATGGTGGCTCCCTTGTTAAGTTTAGGTCCTTAATTCAATGTCTAGAAATTGAATCCTTGAAGACAAAAGAACGAGAACAGGCTGCAACCAGAGAGTTAGAGAAAGCCATTCAAGTGATTAAAGCCATGCCTGAAATCCAAGAAAATTTGGTGGGTGTTGATTCTACGGTTCCAGATAATGATGAGTTGAATGTTGAAAATCCTTTACCTTCAAAAACAAAAGGTCGACCAAAAGGATCAAGGCTAAAAGGAGGAGTTGAAATTGCAAAGAAGCCTCGTCATTGTCATGTTCCAAATTGCGGTGGAATTGATCATGACTCGAGGAATTGTCCAAATAAAAAGAAAAATATTGAAGCATTACCTTCTCAATCTCCTAATAAGAGGATGAAAGGTTGGAGAAAATCATCTTAA

Protein sequence

>MsaT031730.1

MSSEGRNEAIDGSLEHEDDEIIDSLTTVPEPQHGPLPQANHIDDGFLYEGKVFNSDDEAYNFYCLFARKNGFSIRRHHVYKSIKNQSEDNPLGVYKREFVCHRAGTINADKDNEVEGKRKRKSSRCNCGAKLLVNITTINSEKKWVVKYFNNNHNHELLDDKEVKFLPAYQSIPAIDHDRILLLSKAGCSVSLIIRVLELEKKIDAGNLPFLDKDIRNFIQSQSGIGKEFDASNVLKLCKSLKDADNAFEYEFSIDENNKLEHIIWAFGDSIRAYEAFGDVIVFDTTYRINHYDMPLGIWVGVDNHGNSIFFGCVLLQNEKISSFTWAIKTFLSFVKGKYPQTILTDQDPAMKEAIAMELPNTKHAFCIWHILAKLPTWFSLPLGSRYDDFKDEFYRLYHLECEDDFGREWKLMVEEFCLSKDNHIVLLYSLRQFWALAYLKDFFFAGMTTTGRSESINSYIKRFLGAKTSLTDFINQLGFFVNIRNQAGEEARMRQKYHNPRIRTCFPIEEHVASILTPYAFKLIQHEIELSTKYAATKTNNSVFIVRHHTKSDGGRFVSWIQENESIHCSCKEFEFSGILCRHAFRVLVMKNYFTLPSKYLPLRWRQETSLIPTSSHMINNNGGSLVKFRSLIQCLEIESLKTKEREQAATRELEKAIQVIKAMPEIQENLVGVDSTVPDNDELNVENPLPSKTKGRPKGSRLKGGVEIAKKPRHCHVPNCGGIDHDSRNCPNKKKNIEALPSQSPNKRMKGWRKSS*