Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG031730 | XP_024641248.2 | 95.652 | 759 | 33 | 0 | 1 | 759 | 1 | 759 | 0.0 | 1513 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG031730 | sp|Q9SY66|FRS11_ARATH | 45.186 | 644 | 344 | 4 | 42 | 683 | 43 | 679 | 0.0 | 596 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG031730 | tr|A0A396JX52|A0A396JX52_MEDTR | 95.652 | 759 | 33 | 0 | 1 | 759 | 1 | 759 | 0.0 | 1513 |
Gene ID | Type | Classification |
---|---|---|
MsaG031730 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG031730 | MtrunA17_Chr1g0198761 | 95.652 | 759 | 33 | 0 | 1 | 759 | 1 | 759 | 0.0 | 1513 |
MsaG031730 | MtrunA17_Chr5g0431001 | 70.825 | 497 | 128 | 3 | 1 | 482 | 1 | 495 | 0.0 | 717 |
MsaG031730 | MtrunA17_Chr2g0276841 | 46.635 | 624 | 320 | 5 | 48 | 667 | 71 | 685 | 0.0 | 613 |
MsaG031730 | MtrunA17_Chr2g0294841 | 41.370 | 759 | 402 | 13 | 3 | 733 | 2 | 745 | 0.0 | 588 |
MsaG031730 | MtrunA17_Chr2g0290391 | 45.195 | 666 | 328 | 9 | 14 | 663 | 22 | 666 | 0.0 | 566 |
MsaG031730 | MtrunA17_Chr1g0202341 | 29.777 | 628 | 412 | 12 | 49 | 664 | 53 | 663 | 1.38e-80 | 271 |
MsaG031730 | MtrunA17_Chr5g0448761 | 29.883 | 599 | 391 | 11 | 36 | 619 | 52 | 636 | 3.80e-78 | 267 |
MsaG031730 | MtrunA17_Chr8g0363841 | 28.060 | 670 | 433 | 18 | 47 | 685 | 17 | 668 | 1.22e-73 | 252 |
MsaG031730 | MtrunA17_Chr3g0080351 | 28.473 | 583 | 361 | 13 | 50 | 613 | 79 | 624 | 4.18e-71 | 249 |
MsaG031730 | MtrunA17_Chr2g0329031 | 26.496 | 702 | 452 | 17 | 53 | 726 | 20 | 685 | 4.99e-71 | 247 |
MsaG031730 | MtrunA17_Chr2g0296781 | 29.765 | 682 | 416 | 19 | 53 | 704 | 3 | 651 | 1.91e-70 | 245 |
MsaG031730 | MtrunA17_Chr5g0441581 | 29.021 | 572 | 368 | 14 | 50 | 609 | 35 | 580 | 8.72e-68 | 237 |
MsaG031730 | MtrunA17_Chr2g0287651 | 28.547 | 592 | 392 | 13 | 53 | 631 | 81 | 654 | 1.39e-66 | 237 |
MsaG031730 | MtrunA17_Chr1g0203051 | 27.437 | 554 | 378 | 10 | 53 | 599 | 85 | 621 | 2.80e-65 | 229 |
MsaG031730 | MtrunA17_Chr3g0082121 | 29.930 | 568 | 366 | 13 | 53 | 613 | 49 | 591 | 1.32e-64 | 228 |
MsaG031730 | MtrunA17_Chr6g0477261 | 31.465 | 553 | 335 | 15 | 180 | 704 | 4 | 540 | 1.72e-64 | 227 |
MsaG031730 | MtrunA17_Chr6g0458391 | 28.082 | 584 | 367 | 8 | 44 | 613 | 222 | 766 | 2.97e-63 | 226 |
MsaG031730 | MtrunA17_Chr1g0207551 | 28.223 | 574 | 382 | 13 | 50 | 613 | 37 | 590 | 6.03e-63 | 225 |
MsaG031730 | MtrunA17_Chr5g0440451 | 26.036 | 676 | 427 | 16 | 48 | 682 | 44 | 687 | 2.21e-62 | 225 |
MsaG031730 | MtrunA17_Chr2g0324011 | 27.065 | 569 | 394 | 8 | 50 | 611 | 13 | 567 | 4.57e-62 | 219 |
MsaG031730 | MtrunA17_Chr1g0196541 | 28.196 | 571 | 378 | 13 | 52 | 609 | 2 | 553 | 6.88e-59 | 213 |
MsaG031730 | MtrunA17_Chr5g0448511 | 31.328 | 399 | 258 | 4 | 235 | 618 | 16 | 413 | 2.00e-57 | 205 |
MsaG031730 | MtrunA17_Chr1g0203721 | 26.146 | 589 | 380 | 15 | 50 | 613 | 66 | 624 | 4.25e-56 | 207 |
MsaG031730 | MtrunA17_Chr2g0287061 | 28.873 | 568 | 341 | 15 | 48 | 607 | 184 | 696 | 6.68e-56 | 205 |
MsaG031730 | MtrunA17_Chr3g0118611 | 29.717 | 424 | 287 | 6 | 189 | 607 | 79 | 496 | 1.43e-53 | 198 |
MsaG031730 | MtrunA17_Chr2g0291581 | 25.505 | 643 | 423 | 18 | 53 | 671 | 77 | 687 | 1.95e-51 | 191 |
MsaG031730 | MtrunA17_Chr3g0081281 | 82.796 | 93 | 16 | 0 | 195 | 287 | 1 | 93 | 1.27e-46 | 160 |
MsaG031730 | MtrunA17_Chr1g0164591 | 36.275 | 204 | 128 | 2 | 248 | 450 | 106 | 308 | 1.25e-37 | 143 |
MsaG031730 | MtrunA17_Chr2g0291591 | 24.811 | 528 | 336 | 15 | 49 | 551 | 66 | 557 | 1.62e-37 | 148 |
MsaG031730 | MtrunA17_Chr5g0430921 | 69.412 | 85 | 26 | 0 | 666 | 750 | 1 | 85 | 2.18e-37 | 134 |
MsaG031730 | MtrunA17_Chr7g0258861 | 26.829 | 287 | 196 | 6 | 50 | 333 | 13 | 288 | 3.59e-25 | 107 |
MsaG031730 | MtrunA17_Chr2g0308841 | 25.962 | 208 | 149 | 2 | 405 | 607 | 15 | 222 | 2.30e-15 | 77.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG031730 | AT1G10240.2 | 45.186 | 644 | 344 | 4 | 42 | 683 | 43 | 679 | 0.0 | 596 |
MsaG031730 | AT1G10240.1 | 45.186 | 644 | 344 | 4 | 42 | 683 | 43 | 679 | 0.0 | 596 |
MsaG031730 | AT5G28530.1 | 42.685 | 663 | 349 | 7 | 17 | 664 | 28 | 674 | 0.0 | 536 |
MsaG031730 | AT5G28530.3 | 42.383 | 663 | 347 | 7 | 17 | 664 | 28 | 670 | 0.0 | 536 |
MsaG031730 | AT5G28530.2 | 42.383 | 663 | 347 | 7 | 17 | 664 | 28 | 670 | 0.0 | 536 |
MsaG031730 | AT5G28530.4 | 38.744 | 653 | 326 | 9 | 17 | 664 | 28 | 611 | 1.15e-147 | 446 |
MsaG031730 | AT5G28530.5 | 38.438 | 653 | 324 | 9 | 17 | 664 | 28 | 607 | 3.57e-147 | 444 |
MsaG031730 | AT4G38180.1 | 30.159 | 567 | 378 | 7 | 48 | 607 | 74 | 629 | 3.11e-77 | 265 |
MsaG031730 | AT4G15090.1 | 28.621 | 573 | 380 | 11 | 50 | 611 | 54 | 608 | 3.13e-75 | 260 |
MsaG031730 | AT4G15090.5 | 28.621 | 573 | 380 | 11 | 50 | 611 | 54 | 608 | 3.13e-75 | 260 |
MsaG031730 | AT4G15090.3 | 28.621 | 573 | 380 | 11 | 50 | 611 | 54 | 608 | 3.13e-75 | 260 |
MsaG031730 | AT4G15090.2 | 28.621 | 573 | 380 | 11 | 50 | 611 | 54 | 608 | 3.13e-75 | 260 |
MsaG031730 | AT4G15090.4 | 28.621 | 573 | 380 | 11 | 50 | 611 | 54 | 608 | 3.13e-75 | 260 |
MsaG031730 | AT1G76320.3 | 27.482 | 564 | 373 | 11 | 53 | 607 | 3 | 539 | 1.27e-64 | 228 |
MsaG031730 | AT1G76320.2 | 27.482 | 564 | 373 | 11 | 53 | 607 | 3 | 539 | 1.75e-64 | 229 |
MsaG031730 | AT1G76320.1 | 27.482 | 564 | 373 | 11 | 53 | 607 | 3 | 539 | 1.88e-64 | 229 |
MsaG031730 | AT1G76320.4 | 27.482 | 564 | 373 | 11 | 53 | 607 | 3 | 539 | 1.88e-64 | 229 |
MsaG031730 | AT3G22170.2 | 26.667 | 585 | 366 | 15 | 50 | 611 | 73 | 617 | 1.11e-63 | 228 |
MsaG031730 | AT3G22170.1 | 26.667 | 585 | 366 | 15 | 50 | 611 | 73 | 617 | 1.11e-63 | 228 |
MsaG031730 | AT3G06250.2 | 28.169 | 568 | 341 | 14 | 48 | 607 | 191 | 699 | 1.45e-56 | 207 |
MsaG031730 | AT3G06250.1 | 28.169 | 568 | 341 | 14 | 48 | 607 | 191 | 699 | 1.45e-56 | 207 |
MsaG031730 | AT3G06250.3 | 28.169 | 568 | 341 | 14 | 48 | 607 | 191 | 699 | 1.45e-56 | 207 |
MsaG031730 | AT2G27110.2 | 25.724 | 587 | 388 | 13 | 50 | 629 | 52 | 597 | 1.87e-53 | 199 |
MsaG031730 | AT2G27110.1 | 25.724 | 587 | 388 | 13 | 50 | 629 | 52 | 597 | 1.87e-53 | 199 |
MsaG031730 | AT5G18960.2 | 27.768 | 587 | 352 | 17 | 33 | 607 | 197 | 723 | 5.48e-53 | 197 |
MsaG031730 | AT5G18960.1 | 27.768 | 587 | 352 | 17 | 33 | 607 | 197 | 723 | 5.48e-53 | 197 |
MsaG031730 | AT4G19990.6 | 26.917 | 587 | 354 | 15 | 49 | 611 | 23 | 558 | 9.06e-52 | 193 |
MsaG031730 | AT4G19990.2 | 26.917 | 587 | 354 | 15 | 49 | 611 | 23 | 558 | 9.06e-52 | 193 |
MsaG031730 | AT4G19990.3 | 26.917 | 587 | 354 | 15 | 49 | 611 | 23 | 558 | 9.94e-52 | 193 |
MsaG031730 | AT4G19990.4 | 26.917 | 587 | 354 | 15 | 49 | 611 | 23 | 558 | 9.94e-52 | 193 |
MsaG031730 | AT4G19990.5 | 26.917 | 587 | 354 | 15 | 49 | 611 | 23 | 558 | 1.34e-51 | 192 |
MsaG031730 | AT4G19990.7 | 26.917 | 587 | 354 | 15 | 49 | 611 | 37 | 572 | 1.50e-51 | 192 |
MsaG031730 | AT2G27110.3 | 28.434 | 415 | 284 | 7 | 222 | 629 | 44 | 452 | 7.45e-51 | 190 |
MsaG031730 | AT4G19990.1 | 26.816 | 537 | 326 | 13 | 98 | 611 | 9 | 501 | 4.56e-48 | 181 |
MsaG031730 | AT1G52520.1 | 25.610 | 656 | 427 | 18 | 50 | 684 | 88 | 703 | 5.96e-48 | 181 |
MsaG031730 | AT2G32250.5 | 27.078 | 373 | 267 | 4 | 242 | 610 | 180 | 551 | 1.11e-47 | 181 |
MsaG031730 | AT2G32250.2 | 27.078 | 373 | 267 | 4 | 242 | 610 | 180 | 551 | 1.49e-47 | 181 |
MsaG031730 | AT2G32250.4 | 27.078 | 373 | 267 | 4 | 242 | 610 | 180 | 551 | 1.49e-47 | 181 |
MsaG031730 | AT2G32250.8 | 27.078 | 373 | 267 | 4 | 242 | 610 | 139 | 510 | 1.58e-47 | 181 |
MsaG031730 | AT2G32250.7 | 27.078 | 373 | 267 | 4 | 242 | 610 | 139 | 510 | 1.64e-47 | 181 |
MsaG031730 | AT2G32250.6 | 27.078 | 373 | 267 | 4 | 242 | 610 | 180 | 551 | 1.69e-47 | 181 |
MsaG031730 | AT2G32250.1 | 27.078 | 373 | 267 | 4 | 242 | 610 | 180 | 551 | 1.69e-47 | 181 |
MsaG031730 | AT2G32250.3 | 27.078 | 373 | 267 | 4 | 242 | 610 | 180 | 551 | 1.69e-47 | 181 |
MsaG031730 | AT1G80010.1 | 23.520 | 659 | 431 | 19 | 50 | 667 | 98 | 724 | 1.93e-43 | 168 |
MsaG031730 | AT4G38170.1 | 26.059 | 472 | 298 | 9 | 234 | 681 | 20 | 464 | 1.05e-42 | 163 |
Find 115 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTATTCGCTTCGTCAATTT+TGG | 0.097332 | 6:+33957544 | MsaT031730.1:CDS |
ACAAATTGGAGCATATTATT+TGG | 0.124855 | 6:+33956951 | MsaT031730.1:CDS |
ACGACATGCCACTTGGAATA+TGG | 0.159614 | 6:+33957053 | MsaT031730.1:CDS |
TTAGAATGTGAAGATGATTT+TGG | 0.191974 | 6:+33957459 | MsaT031730.1:CDS |
CTCATGTTGAATCAACTTAA+AGG | 0.216965 | 6:-33957918 | None:intergenic |
GCCTGAAATCCAAGAAAATT+TGG | 0.233903 | 6:+33958351 | MsaT031730.1:CDS |
GAAATCAGTCAGACTTGTTT+TGG | 0.264083 | 6:-33957661 | None:intergenic |
AATCGATGAAAATAACAAAT+TGG | 0.277704 | 6:+33956937 | MsaT031730.1:CDS |
TTCCTTTACATGGGCTATAA+AGG | 0.281917 | 6:+33957144 | MsaT031730.1:CDS |
TAGAACACAACCAAAGAAAA+TGG | 0.288289 | 6:-33957101 | None:intergenic |
ACATTCAACTCATCATTATC+TGG | 0.288967 | 6:-33958394 | None:intergenic |
TACGAGGATTGTGGTACTTT+TGG | 0.294933 | 6:-33957841 | None:intergenic |
AATCATCTTCACATTCTAAA+TGG | 0.310029 | 6:-33957455 | None:intergenic |
AATTTCTAGACATTGAATTA+AGG | 0.310730 | 6:-33958251 | None:intergenic |
TGATCAATTCCACCGCAATT+TGG | 0.312242 | 6:-33958514 | None:intergenic |
CCAAAAGGATCAAGGCTAAA+AGG | 0.316490 | 6:+33958451 | MsaT031730.1:CDS |
GCAATAGCTTCTTTCATTGC+AGG | 0.316817 | 6:-33957306 | None:intergenic |
CAAATTGGAGCATATTATTT+GGG | 0.322554 | 6:+33956952 | MsaT031730.1:CDS |
GAGCATATTATTTGGGCATT+TGG | 0.323044 | 6:+33956959 | MsaT031730.1:CDS |
AAAGCGGCCTCCGTCACTTT+TGG | 0.333584 | 6:-33958008 | None:intergenic |
TGGGAGGGAATGGAAATTGA+TGG | 0.335002 | 6:+33957479 | MsaT031730.1:CDS |
ATAATGAAGTGGAAGGTAAA+AGG | 0.341694 | 6:+33956510 | MsaT031730.1:CDS |
ATTCAATCTCAAAGTGGTAT+TGG | 0.353310 | 6:+33956833 | MsaT031730.1:CDS |
CGACATGCCACTTGGAATAT+GGG | 0.356248 | 6:+33957054 | MsaT031730.1:CDS |
CATGGCTTTAATCACTTGAA+TGG | 0.360613 | 6:-33958329 | None:intergenic |
GTGGCTCCCTTGTTAAGTTT+AGG | 0.365380 | 6:+33958227 | MsaT031730.1:CDS |
TCATCATATCTCGACCCTAA+TGG | 0.370604 | 6:-33957405 | None:intergenic |
ATTCGAGCATATGAAGCTTT+CGG | 0.374991 | 6:+33956989 | MsaT031730.1:CDS |
GCGAATAGAGCAAGACAATA+TGG | 0.379711 | 6:-33957530 | None:intergenic |
AATGGCTTTCTCTAACTCTC+TGG | 0.387604 | 6:-33958311 | None:intergenic |
TTTGCTGGAATGACTACAAC+TGG | 0.388310 | 6:+33957594 | MsaT031730.1:CDS |
GATGCGACATGTTCCTCAAT+AGG | 0.389851 | 6:-33957878 | None:intergenic |
ACCAAGTTGGTAACTTTGCC+AGG | 0.432753 | 6:-33957374 | None:intergenic |
AAAACCATCATCAATGTGAT+TGG | 0.437647 | 6:-33956291 | None:intergenic |
TTGGGCACTAGCTTATTTGA+AGG | 0.439783 | 6:+33957563 | MsaT031730.1:CDS |
AGAAGATTTCTTCCTTTACA+TGG | 0.445605 | 6:+33957134 | MsaT031730.1:CDS |
CAGTCGGAGGATAATCCATT+AGG | 0.449548 | 6:+33956431 | MsaT031730.1:CDS |
TTGTTAGGAGGATGAAAGGT+TGG | 0.451803 | 6:+33958698 | MsaT031730.1:intron |
CCAAGTATCTTCCTCTTCGT+TGG | 0.454342 | 6:+33958152 | MsaT031730.1:CDS |
GTAATGATTTATTCGATAAG+TGG | 0.454444 | 6:-33957032 | None:intergenic |
TTTGGTGGGTGTTGATTCTA+CGG | 0.458275 | 6:+33958369 | MsaT031730.1:CDS |
AAAGGTCCATGTTGTGGCTC+TGG | 0.458551 | 6:-33956260 | None:intergenic |
GGAAGAAATGAGGCCATTGA+TGG | 0.463463 | 6:+33956188 | MsaT031730.1:CDS |
TGAATCAACTTAAAGGCATA+AGG | 0.471446 | 6:-33957911 | None:intergenic |
ACGGAGGCCGCTTTGTAAGT+TGG | 0.473799 | 6:+33958017 | MsaT031730.1:CDS |
GCTGGAATACTTTGATAAGC+AGG | 0.476716 | 6:-33956677 | None:intergenic |
TGAGTTATTAGATGATAAAG+AGG | 0.481430 | 6:+33956643 | MsaT031730.1:CDS |
CAAGCCAATCACATTGATGA+TGG | 0.483893 | 6:+33956287 | MsaT031730.1:CDS |
TGAGGCCATTGATGGGTCCT+TGG | 0.490216 | 6:+33956196 | MsaT031730.1:CDS |
GAAGACAAAAGAACGAGAAC+AGG | 0.492424 | 6:+33958282 | MsaT031730.1:CDS |
CAAATTCCTTGCAAGAACAA+TGG | 0.494565 | 6:-33958060 | None:intergenic |
TCCTGGCAAAGTTACCAACT+TGG | 0.495704 | 6:+33957373 | MsaT031730.1:CDS |
TTCTTTGTTAGGAGGATGAA+AGG | 0.495779 | 6:+33958694 | MsaT031730.1:intron |
ATGTGATTGGCTTGAGGCAA+AGG | 0.498857 | 6:-33956278 | None:intergenic |
TGATCTGTAAGAATTGTTTG+TGG | 0.499648 | 6:-33957279 | None:intergenic |
CCAACGAAGAGGAAGATACT+TGG | 0.501458 | 6:-33958152 | None:intergenic |
TTCATCATCTTCATGTTCCA+AGG | 0.504241 | 6:-33956213 | None:intergenic |
GAGTTTGTTTGTCATCGTGC+TGG | 0.506578 | 6:+33956467 | MsaT031730.1:CDS |
AAAACAAAAGGTCGACCAAA+AGG | 0.507451 | 6:+33958436 | MsaT031730.1:CDS |
TAATTGTGGTGCAAAATTGT+TGG | 0.514270 | 6:+33956553 | MsaT031730.1:CDS |
CTTTATCATCTAATAACTCA+TGG | 0.514899 | 6:-33956640 | None:intergenic |
AGGAAGATACTTGGAAGGGA+GGG | 0.517778 | 6:-33958143 | None:intergenic |
ATCAATCCATTGTTCTTGCA+AGG | 0.526683 | 6:+33958054 | MsaT031730.1:CDS |
AATCATTACGACATGCCACT+TGG | 0.527488 | 6:+33957046 | MsaT031730.1:CDS |
ATACGGTCATGATCAATAGC+TGG | 0.536592 | 6:-33956695 | None:intergenic |
TACCTTTATAGCCCATGTAA+AGG | 0.539233 | 6:-33957146 | None:intergenic |
ATGTTCCAAGGACCCATCAA+TGG | 0.541178 | 6:-33956201 | None:intergenic |
AAGTGGAAGGTAAAAGGAAA+CGG | 0.542859 | 6:+33956516 | MsaT031730.1:CDS |
AATTGAGATAGTTATGTCAT+CGG | 0.549431 | 6:+33956163 | None:intergenic |
GTTAACATTAGAAATCAAGC+TGG | 0.551937 | 6:+33957800 | MsaT031730.1:CDS |
ATGCCACTTGGAATATGGGT+TGG | 0.553304 | 6:+33957058 | MsaT031730.1:CDS |
TTAATCATGTGACTAGATGT+TGG | 0.555091 | 6:-33958196 | None:intergenic |
CGAAGAGGAAGATACTTGGA+AGG | 0.558742 | 6:-33958148 | None:intergenic |
GGTATTTAACAGTGATGATG+AGG | 0.560265 | 6:+33956328 | MsaT031730.1:CDS |
TGAGGCAAAGGTCCATGTTG+TGG | 0.560366 | 6:-33956266 | None:intergenic |
GAAGATTTCTTCCTTTACAT+GGG | 0.562746 | 6:+33957135 | MsaT031730.1:CDS |
CATTGTCATGTTCCAAATTG+CGG | 0.563875 | 6:+33958502 | MsaT031730.1:CDS |
TGGGTTGGAGTCGATAATCA+TGG | 0.565405 | 6:+33957073 | MsaT031730.1:CDS |
CAAATCTATTAAGAATCAGT+CGG | 0.568228 | 6:+33956415 | MsaT031730.1:CDS |
AAGGTCGACCAAAAGGATCA+AGG | 0.568587 | 6:+33958443 | MsaT031730.1:CDS |
CGCAGACAAAGATAATGAAG+TGG | 0.571345 | 6:+33956499 | MsaT031730.1:CDS |
AATGGAAGAGAAAACCAAGT+TGG | 0.583280 | 6:-33957387 | None:intergenic |
ATGTTGTGGCTCTGGTACAG+TGG | 0.591155 | 6:-33956252 | None:intergenic |
TTAAGGACCTAAACTTAACA+AGG | 0.597172 | 6:-33958234 | None:intergenic |
GACAAAGATAATGAAGTGGA+AGG | 0.597807 | 6:+33956503 | MsaT031730.1:CDS |
GAAGAAATGAGGCCATTGAT+GGG | 0.599272 | 6:+33956189 | MsaT031730.1:CDS |
GAGGAAGATACTTGGAAGGG+AGG | 0.601334 | 6:-33958144 | None:intergenic |
TGTCATGTTCCAAATTGCGG+TGG | 0.607106 | 6:+33958505 | MsaT031730.1:CDS |
GTCATCGGAGGGAAGAAATG+AGG | 0.612844 | 6:+33956178 | MsaT031730.1:CDS |
GAGATAGTTATGTCATCGGA+GGG | 0.617582 | 6:+33956167 | None:intergenic |
GTTTCTTGTCTCCAACGAAG+AGG | 0.619133 | 6:-33958163 | None:intergenic |
GAAATCCAAGAAAATTTGGT+GGG | 0.622463 | 6:+33958355 | MsaT031730.1:CDS |
TGAGATAGTTATGTCATCGG+AGG | 0.623694 | 6:+33956166 | None:intergenic |
AATGAAAGAAGCTATTGCAA+TGG | 0.630294 | 6:+33957311 | MsaT031730.1:CDS |
CGACATCATACCAAAAGTGA+CGG | 0.631042 | 6:+33957998 | MsaT031730.1:CDS |
ACGTTCTAATACGAGGATTG+TGG | 0.631665 | 6:-33957850 | None:intergenic |
AATTTCATTCAATCTCAAAG+TGG | 0.633071 | 6:+33956827 | MsaT031730.1:CDS |
CACATGATTAACAACAATGG+TGG | 0.633540 | 6:+33958208 | MsaT031730.1:CDS |
CTTGTATCCAACTTACAAAG+CGG | 0.636419 | 6:-33958024 | None:intergenic |
TCATCAATGTGATTGGCTTG+AGG | 0.636529 | 6:-33956284 | None:intergenic |
TACTTATTAGGAGATTGAGA+AGG | 0.640164 | 6:-33958583 | None:intergenic |
ACTGTACCAGAGCCACAACA+TGG | 0.647764 | 6:+33956254 | MsaT031730.1:CDS |
ATCTATTAAGAATCAGTCGG+AGG | 0.648389 | 6:+33956418 | MsaT031730.1:CDS |
AAGTCGTCAAGATGTAATTG+TGG | 0.651128 | 6:+33956539 | MsaT031730.1:CDS |
TGAAATCCAAGAAAATTTGG+TGG | 0.656666 | 6:+33958354 | MsaT031730.1:CDS |
TGAGTTGTCTACAAAATATG+CGG | 0.657240 | 6:+33957943 | MsaT031730.1:CDS |
AGTCACATGATTAACAACAA+TGG | 0.669494 | 6:+33958205 | MsaT031730.1:CDS |
GTGGAATTGATCATGACTCG+AGG | 0.673869 | 6:+33958524 | MsaT031730.1:CDS |
GAAGAGGAAGATACTTGGAA+GGG | 0.674893 | 6:-33958147 | None:intergenic |
AAAGGATCAAGGCTAAAAGG+AGG | 0.688106 | 6:+33958454 | MsaT031730.1:CDS |
ACTCCAACCCATATTCCAAG+TGG | 0.689531 | 6:-33957061 | None:intergenic |
CATCATACCAAAAGTGACGG+AGG | 0.689601 | 6:+33958001 | MsaT031730.1:CDS |
TAAGGACCTAAACTTAACAA+GGG | 0.703331 | 6:-33958233 | None:intergenic |
GGAAAACACGTTCTAATACG+AGG | 0.704105 | 6:-33957857 | None:intergenic |
TTTGGAACATGACAATGACG+AGG | 0.714978 | 6:-33958496 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr6 | gene | 33956176 | 33958735 | 33956176 | ID=MsaG031730 |
Chr6 | mRNA | 33956176 | 33958735 | 33956176 | ID=MsaT031730.1;Parent=MsaG031730 |
Chr6 | exon | 33956176 | 33957165 | 33956176 | ID=MsaT031730.1.exon1;Parent=MsaT031730.1 |
Chr6 | CDS | 33956176 | 33957165 | 33956176 | ID=cds.MsaT031730.1;Parent=MsaT031730.1 |
Chr6 | exon | 33957249 | 33957692 | 33957249 | ID=MsaT031730.1.exon2;Parent=MsaT031730.1 |
Chr6 | CDS | 33957249 | 33957692 | 33957249 | ID=cds.MsaT031730.1;Parent=MsaT031730.1 |
Chr6 | exon | 33957788 | 33958602 | 33957788 | ID=MsaT031730.1.exon3;Parent=MsaT031730.1 |
Chr6 | CDS | 33957788 | 33958602 | 33957788 | ID=cds.MsaT031730.1;Parent=MsaT031730.1 |
Chr6 | exon | 33958705 | 33958735 | 33958705 | ID=MsaT031730.1.exon4;Parent=MsaT031730.1 |
Chr6 | CDS | 33958705 | 33958735 | 33958705 | ID=cds.MsaT031730.1;Parent=MsaT031730.1 |
Gene Sequence |
Protein sequence |