AlfalfaGEDB | MsaG031821

M. sativa ssp. caerulea / MsaG031821

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031821	PNX89196.1	74.742	194	49	0	58	251	5	198	1.90e-95	295

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031821	sp\|Q9LKR4\|FRS10_ARATH	34.568	162	102	3	88	246	61	221	5.54e-18	89.0

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031821	tr\|A0A2K3MEL2\|A0A2K3MEL2_TRIPR	74.742	194	49	0	58	251	5	198	9.05e-96	295

TFs/TRs:

Gene ID	Type	Classification
MsaG031821	TF	FAR1

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000117	MsaG031821	0.825503	8.033689e-54	2.049046e-51
MsaG000128	MsaG031821	0.829166	1.074698e-54	3.036718e-52
MsaG000352	MsaG031821	0.803682	5.227123e-49	7.686019e-47
MsaG000559	MsaG031821	0.841262	9.800953e-58	3.981109e-55
MsaG000528	MsaG031821	0.804515	3.514111e-49	5.267883e-47
MsaG000546	MsaG031821	0.814073	3.202204e-51	6.047366e-49
MsaG000550	MsaG031821	0.819278	2.207830e-52	4.764384e-50
MsaG000584	MsaG031821	0.861445	2.015260e-63	1.655467e-60
MsaG000759	MsaG031821	0.834472	5.344634e-56	1.762268e-53
MsaG000762	MsaG031821	0.855626	1.076904e-61	7.116943e-59
MsaG000942	MsaG031821	0.801856	1.239762e-48	1.748126e-46
MsaG001057	MsaG031821	0.869702	5.157184e-66	5.902213e-63
MsaG001306	MsaG031821	0.802371	9.726552e-49	1.387714e-46
MsaG001514	MsaG031821	0.839960	2.140371e-57	8.345106e-55
MsaG001728	MsaG031821	0.823003	3.087557e-53	7.356473e-51
MsaG001809	MsaG031821	0.801848	1.244243e-48	1.754127e-46
MsaG002170	MsaG031821	0.820906	9.400302e-53	2.117621e-50
MsaG003161	MsaG031821	0.836813	1.375118e-56	4.863820e-54
MsaG003703	MsaG031821	0.866401	5.878694e-65	5.875019e-62
MsaG003964	MsaG031821	0.802514	9.091113e-49	1.301296e-46
MsaG004164	MsaG031821	0.808526	5.052700e-50	8.327282e-48
MsaG004264	MsaG031821	0.848719	9.712882e-60	5.038964e-57
MsaG004277	MsaG031821	0.817904	4.510875e-52	9.391729e-50
MsaG004320	MsaG031821	0.801951	1.185801e-48	1.675604e-46
MsaG004370	MsaG031821	0.817681	5.060487e-52	1.047553e-49
MsaG004344	MsaG031821	0.828599	1.472095e-54	4.093890e-52
MsaG004349	MsaG031821	0.808020	6.469551e-50	1.053352e-47
MsaG004385	MsaG031821	0.809817	2.679675e-50	4.556052e-48
MsaG004544	MsaG031821	0.811613	1.100279e-50	1.954534e-48
MsaG004744	MsaG031821	0.811473	1.180040e-50	2.089028e-48
MsaG004745	MsaG031821	0.803963	4.572647e-49	6.767688e-47
MsaG004749	MsaG031821	0.813665	3.933956e-51	7.353685e-49
MsaG004801	MsaG031821	0.820953	9.168874e-53	2.068126e-50
MsaG004849	MsaG031821	0.827620	2.526449e-54	6.835687e-52
MsaG004881	MsaG031821	0.805534	2.155848e-49	3.309107e-47
MsaG004934	MsaG031821	0.822158	4.845319e-53	1.128425e-50
MsaG004938	MsaG031821	0.801475	1.482731e-48	2.072660e-46
MsaG004984	MsaG031821	0.813834	3.613026e-51	6.782757e-49
MsaG004990	MsaG031821	0.836542	1.610803e-56	5.651117e-54
MsaG005310	MsaG031821	0.805815	1.883200e-49	2.909748e-47
MsaG005289	MsaG031821	0.852169	1.054704e-60	6.163135e-58
MsaG005386	MsaG031821	0.801879	1.226417e-48	1.730217e-46
MsaG005584	MsaG031821	0.806795	1.173324e-49	1.855375e-47
MsaG005993	MsaG031821	0.805657	2.032385e-49	3.128633e-47
MsaG006035	MsaG031821	0.823698	2.128188e-53	5.167259e-51
MsaG006307	MsaG031821	0.805814	1.884359e-49	2.911458e-47
MsaG006469	MsaG031821	0.806219	1.550181e-49	2.418264e-47
MsaG006901	MsaG031821	0.846439	4.085301e-59	1.963204e-56
MsaG006942	MsaG031821	0.865170	1.433360e-64	1.363557e-61
MsaG006956	MsaG031821	0.867952	1.889305e-65	2.011207e-62
MsaG007413	MsaG031821	0.804397	3.717054e-49	5.557002e-47
MsaG007480	MsaG031821	0.815385	1.645105e-51	3.211258e-49
MsaG007641	MsaG031821	0.827199	3.185019e-54	8.516035e-52
MsaG007646	MsaG031821	0.806473	1.371065e-49	2.151769e-47
MsaG007652	MsaG031821	0.820846	9.702618e-53	2.182128e-50
MsaG007655	MsaG031821	0.828390	1.651871e-54	4.567169e-52
MsaG008081	MsaG031821	0.801478	1.480953e-48	2.070303e-46
MsaG008166	MsaG031821	0.837165	1.118687e-56	3.999351e-54
MsaG008225	MsaG031821	0.842315	5.184617e-58	2.177801e-55
MsaG008256	MsaG031821	0.821702	6.172086e-53	1.420029e-50
MsaG008291	MsaG031821	0.806567	1.309811e-49	2.060175e-47
MsaG008368	MsaG031821	0.832695	1.477243e-55	4.621730e-53
MsaG008442	MsaG031821	0.804127	4.227261e-49	6.280482e-47
MsaG008405	MsaG031821	0.835393	3.140435e-56	1.064372e-53
MsaG008693	MsaG031821	0.818869	2.732259e-52	5.832915e-50
MsaG009179	MsaG031821	0.855649	1.060471e-61	7.014182e-59
MsaG009184	MsaG031821	0.816701	8.387028e-52	1.692941e-49
MsaG009472	MsaG031821	0.822803	3.436554e-53	8.143834e-51
MsaG009672	MsaG031821	0.830733	4.477344e-55	1.323177e-52
MsaG009781	MsaG031821	0.829323	9.847858e-55	2.795171e-52
MsaG009859	MsaG031821	0.804693	3.227056e-49	4.857571e-47
MsaG010213	MsaG031821	0.822675	3.678880e-53	8.687834e-51
MsaG010275	MsaG031821	0.813491	4.294065e-51	7.991869e-49
MsaG010628	MsaG031821	0.808384	5.415483e-50	8.894513e-48
MsaG011506	MsaG031821	0.824328	1.516845e-53	3.746407e-51
MsaG011915	MsaG031821	0.804623	3.336358e-49	5.013979e-47
MsaG011997	MsaG031821	0.834789	4.452941e-56	1.482226e-53
MsaG012047	MsaG031821	0.860479	3.949103e-63	3.127545e-60
MsaG012248	MsaG031821	0.834598	4.972940e-56	1.645863e-53
MsaG012331	MsaG031821	0.813453	4.377783e-51	8.140098e-49
MsaG013245	MsaG031821	0.839834	2.308255e-57	8.964155e-55
MsaG014194	MsaG031821	0.832734	1.445386e-55	4.527415e-53
MsaG014725	MsaG031821	0.812763	6.192489e-51	1.131735e-48
MsaG015294	MsaG031821	0.829813	7.492565e-55	2.156794e-52
MsaG015852	MsaG031821	0.806154	1.599690e-49	2.491542e-47
MsaG016812	MsaG031821	0.806799	1.171148e-49	1.852088e-47
MsaG017256	MsaG031821	0.858927	1.152088e-62	8.599844e-60
MsaG017270	MsaG031821	0.802016	1.149963e-48	1.627352e-46
MsaG017464	MsaG031821	0.830401	5.394158e-55	1.579148e-52
MsaG017723	MsaG031821	0.800100	2.822027e-48	3.824090e-46
MsaG017779	MsaG031821	0.803204	6.558561e-49	9.537940e-47
MsaG017784	MsaG031821	0.829414	9.363131e-55	2.664562e-52
MsaG018045	MsaG031821	0.804099	4.284285e-49	6.361256e-47
MsaG018465	MsaG031821	0.830857	4.176306e-55	1.238689e-52
MsaG018417	MsaG031821	0.802173	1.067889e-48	1.516638e-46
MsaG018671	MsaG031821	0.830593	4.844737e-55	1.425971e-52
MsaG018809	MsaG031821	0.814566	2.494602e-51	4.769621e-49
MsaG018928	MsaG031821	0.800979	1.871832e-48	2.587293e-46
MsaG019130	MsaG031821	0.810227	2.188701e-50	3.758427e-48
MsaG019206	MsaG031821	0.831497	2.912551e-55	8.800107e-53
MsaG019422	MsaG031821	0.856344	6.654688e-62	4.514700e-59
MsaG019656	MsaG031821	0.829884	7.204379e-55	2.078111e-52
MsaG019772	MsaG031821	0.815986	1.209940e-51	2.398081e-49
MsaG019927	MsaG031821	0.804931	2.879253e-49	4.358110e-47
MsaG020294	MsaG031821	0.821630	6.410510e-53	1.472074e-50
MsaG020559	MsaG031821	0.826343	5.087763e-54	1.328329e-51
MsaG020748	MsaG031821	0.829964	6.887717e-55	1.991354e-52
MsaG020784	MsaG031821	0.832099	2.072647e-55	6.373665e-53
MsaG020888	MsaG031821	0.825524	7.945043e-54	2.027681e-51
MsaG021520	MsaG031821	0.800554	2.282525e-48	3.125027e-46
MsaG022227	MsaG031821	0.808295	5.657374e-50	9.272036e-48
MsaG022780	MsaG031821	0.821495	6.886997e-53	1.575819e-50
MsaG023153	MsaG031821	0.829377	9.558202e-55	2.717170e-52
MsaG023474	MsaG031821	0.802270	1.020096e-48	1.452000e-46
MsaG023810	MsaG031821	0.825111	9.936952e-54	2.507296e-51
MsaG023887	MsaG031821	0.830755	4.423077e-55	1.307984e-52
MsaG023991	MsaG031821	0.844029	1.819457e-58	8.074641e-56
MsaG024331	MsaG031821	0.810134	2.291891e-50	3.926609e-48
MsaG025845	MsaG031821	0.807467	8.468794e-50	1.360638e-47
MsaG025861	MsaG031821	0.825948	6.309069e-54	1.629297e-51
MsaG027022	MsaG031821	0.820346	1.261984e-52	2.801234e-50
MsaG027136	MsaG031821	0.811550	1.135851e-50	2.014566e-48
MsaG027160	MsaG031821	0.804481	3.570328e-49	5.348016e-47
MsaG027672	MsaG031821	0.818899	2.690774e-52	5.748742e-50
MsaG027745	MsaG031821	0.800484	2.358669e-48	3.224099e-46
MsaG028510	MsaG031821	0.803387	6.013971e-49	8.782958e-47
MsaG028488	MsaG031821	0.809954	2.504997e-50	4.273048e-48
MsaG028529	MsaG031821	0.812147	8.431401e-51	1.517465e-48
MsaG028645	MsaG031821	0.818730	2.937619e-52	6.248391e-50
MsaG028664	MsaG031821	0.800747	2.085736e-48	2.868060e-46
MsaG028713	MsaG031821	0.805769	1.925360e-49	2.971675e-47
MsaG028862	MsaG031821	0.829866	7.276679e-55	2.097900e-52
MsaG028961	MsaG031821	0.820258	1.321794e-52	2.927220e-50
MsaG028905	MsaG031821	0.832092	2.080160e-55	6.395643e-53
MsaG028990	MsaG031821	0.811087	1.429586e-50	2.506979e-48
MsaG029132	MsaG031821	0.802707	8.298886e-49	1.193117e-46
MsaG029328	MsaG031821	0.829589	8.489811e-55	2.428378e-52
MsaG029360	MsaG031821	0.803401	5.973979e-49	8.727302e-47
MsaG029362	MsaG031821	0.829826	7.439333e-55	2.142301e-52
MsaG029710	MsaG031821	0.800008	2.945563e-48	3.983382e-46
MsaG029735	MsaG031821	0.816390	9.839424e-52	1.970318e-49
MsaG029789	MsaG031821	0.823627	2.211457e-53	5.358985e-51
MsaG030267	MsaG031821	0.847823	1.712644e-59	8.622438e-57
MsaG030237	MsaG031821	0.816372	9.930077e-52	1.987589e-49
MsaG030388	MsaG031821	0.804308	3.879183e-49	5.787502e-47
MsaG030548	MsaG031821	0.813471	4.338515e-51	8.070602e-49
MsaG031393	MsaG031821	0.825848	6.660616e-54	1.715242e-51
MsaG031819	MsaG031821	0.811359	1.248732e-50	2.204453e-48
MsaG031821	MsaG033961	0.849182	7.230504e-60	3.811290e-57
MsaG031821	MsaG034149	0.816375	9.917076e-52	1.985105e-49
MsaG031821	MsaG034173	0.819810	1.672215e-52	3.659141e-50
MsaG031821	MsaG035644	0.809361	3.354169e-50	5.640052e-48
MsaG031821	MsaG036062	0.813717	3.831369e-51	7.171385e-49
MsaG031821	MsaG036444	0.807747	7.391004e-50	1.195471e-47
MsaG031821	MsaG036714	0.822968	3.145865e-53	7.488422e-51
MsaG031821	MsaG036718	0.820125	1.417274e-52	3.127532e-50
MsaG031821	MsaG037874	0.833265	1.067699e-55	3.396936e-53
MsaG031821	MsaG039424	0.842069	6.017997e-58	2.508155e-55
MsaG031821	MsaG039458	0.801642	1.371440e-48	1.924370e-46
MsaG031821	MsaG040171	0.801978	1.170909e-48	1.655592e-46
MsaG031821	MsaG040191	0.820549	1.134153e-52	2.530946e-50
MsaG031821	MsaG040480	0.836584	1.571652e-56	5.520605e-54
MsaG031821	MsaG040747	0.824741	1.214134e-53	3.032516e-51
MsaG031821	MsaG040767	0.816768	8.103223e-52	1.638499e-49
MsaG031821	MsaG041597	0.815270	1.744352e-51	3.395095e-49
MsaG031821	MsaG041793	0.824382	1.473617e-53	3.644925e-51
MsaG031821	MsaG041785	0.800538	2.300301e-48	3.148161e-46
MsaG031821	MsaG041973	0.819895	1.598893e-52	3.506709e-50
MsaG031821	MsaG042241	0.800153	2.752342e-48	3.734150e-46
MsaG031821	MsaG042557	0.801731	1.314975e-48	1.848879e-46
MsaG031821	MsaG043017	0.834180	6.323639e-56	2.066779e-53
MsaG031821	MsaG043563	0.823040	3.027038e-53	7.219537e-51
MsaG031821	MsaG044225	0.815824	1.314589e-51	2.594790e-49
MsaG031821	MsaG044614	0.818056	4.169393e-52	8.714911e-50
MsaG031821	MsaG044904	0.819417	2.052983e-52	4.446402e-50
MsaG031821	MsaG045179	0.803135	6.776645e-49	9.839358e-47
MsaG031821	MsaG045285	0.823922	1.887435e-53	4.610233e-51
MsaG031821	MsaG045353	0.807284	9.254895e-50	1.480452e-47
MsaG031821	MsaG045355	0.812736	6.276387e-51	1.146303e-48
MsaG031821	MsaG045357	0.815519	1.536351e-51	3.009096e-49
MsaG031821	MsaG045508	0.804591	3.387695e-49	5.087337e-47
MsaG031821	MsaG045695	0.806626	1.273105e-49	2.005241e-47
MsaG031821	MsaG045813	0.802748	8.139968e-49	1.171369e-46
MsaG031821	MsaG045950	0.820438	1.202425e-52	2.675497e-50
MsaG031821	MsaG046403	0.835149	3.616627e-56	1.216851e-53
MsaG031821	MsaG046665	0.807355	8.941436e-50	1.432754e-47
MsaG031821	MsaG046638	0.848125	1.415528e-59	7.198490e-57
MsaG031821	MsaG046702	0.848671	1.000896e-59	5.184469e-57
MsaG031821	MsaG047081	0.819706	1.765305e-52	3.852254e-50
MsaG031821	MsaG047118	0.840777	1.312579e-57	5.250315e-55
MsaG031821	MsaG047135	0.816474	9.422959e-52	1.890950e-49
MsaG031821	MsaG002231	0.802190	1.059236e-48	1.504946e-46
MsaG031821	MsaG001947	0.814969	2.032258e-51	3.925548e-49
MsaG031821	MsaG002445	0.836780	1.402079e-56	4.954156e-54
MsaG031821	MsaG009633	0.831921	2.291866e-55	7.011444e-53
MsaG031821	MsaG014302	0.842276	5.306656e-58	2.226303e-55
MsaG031821	MsaG012253	0.810522	1.891481e-50	3.271547e-48
MsaG031821	MsaG016849	0.813279	4.777985e-51	8.845327e-49
MsaG031821	MsaG023305	0.803210	6.540656e-49	9.513204e-47
MsaG031821	MsaG019408	0.803081	6.951205e-49	1.008032e-46
MsaG031821	MsaG018515	0.822480	4.082243e-53	9.589808e-51
MsaG031821	MsaG021171	0.812975	5.567148e-51	1.022853e-48
MsaG031821	MsaG029395	0.800899	1.942543e-48	2.680242e-46
MsaG031821	MsaG032460	0.800179	2.719759e-48	3.692028e-46
MsaG031821	MsaG032865	0.808187	5.961767e-50	9.745722e-48
MsaG031821	MsaG034520	0.810084	2.348975e-50	4.019592e-48
MsaG031821	MsaG031507	0.841997	6.287816e-58	2.614635e-55
MsaG031821	MsaG037377	0.851607	1.520093e-60	8.708012e-58
MsaG031821	MsaG035814	0.841339	9.358348e-58	3.810519e-55
MsaG031821	MsaG036922	0.809102	3.809873e-50	6.366824e-48
MsaG031821	MsaG039794	0.840864	1.245822e-57	4.996996e-55
MsaG031821	MsaG040619	0.822720	3.592204e-53	8.493512e-51
MsaG031821	MsaG036623	0.839236	3.295553e-57	1.256006e-54
MsaG031821	MsaG036743	0.809941	2.520834e-50	4.298695e-48
MsaG031821	MsaG037488	0.823707	2.118000e-53	5.143751e-51
MsaG031821	MsaG045466	0.836744	1.431699e-56	5.053381e-54
MsaG031821	MsaG043534	0.825491	8.089588e-54	2.062594e-51

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031821	MtrunA17_Chr2g0308841	67.826	115	35	1	252	366	153	265	3.29e-49	166
MsaG031821	MtrunA17_Chr1g0203051	33.898	295	164	6	6	278	5	290	2.68e-48	172
MsaG031821	MtrunA17_Chr1g0171741	39.752	161	95	2	53	212	103	262	8.57e-33	123
MsaG031821	MtrunA17_Chr8g0389811	43.307	127	72	0	67	193	69	195	1.25e-31	118
MsaG031821	MtrunA17_Chr2g0287651	35.870	184	118	0	82	265	75	258	2.26e-31	125
MsaG031821	MtrunA17_Chr2g0331371	41.401	157	90	1	32	186	3	159	4.05e-29	112
MsaG031821	MtrunA17_Chr6g0473421	45.263	95	52	0	64	158	37	131	4.66e-24	96.7
MsaG031821	MtrunA17_Chr1g0172931	36.508	126	80	0	39	164	33	158	5.01e-20	85.9
MsaG031821	MtrunA17_Chr5g0448761	30.636	173	118	2	84	254	62	234	1.55e-15	78.2
MsaG031821	MtrunA17_Chr1g0202341	27.746	173	120	3	83	254	52	220	2.46e-14	74.3
MsaG031821	MtrunA17_Chr2g0276841	36.232	138	83	4	88	221	76	212	6.35e-14	73.2
MsaG031821	MtrunA17_Chr2g0290391	31.548	168	109	4	88	251	57	222	4.97e-13	70.5
MsaG031821	MtrunA17_Chr6g0458391	35.714	126	70	4	87	208	96	214	9.06e-13	69.7
MsaG031821	MtrunA17_Chr1g0198761	29.775	178	102	7	88	249	53	223	2.19e-12	68.6
MsaG031821	MtrunA17_Chr6g0451441	26.761	213	140	6	45	250	44	247	4.26e-11	63.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031821	AT5G28530.5	34.568	162	102	3	88	246	61	221	4.02e-19	89.4
MsaG031821	AT5G28530.4	34.568	162	102	3	88	246	61	221	4.23e-19	89.4
MsaG031821	AT5G28530.3	34.568	162	102	3	88	246	61	221	5.12e-19	89.0
MsaG031821	AT5G28530.2	34.568	162	102	3	88	246	61	221	5.12e-19	89.0
MsaG031821	AT5G28530.1	34.568	162	102	3	88	246	61	221	5.63e-19	89.0
MsaG031821	AT4G38180.1	30.508	236	148	8	38	259	17	250	1.54e-15	78.6
MsaG031821	AT1G10240.2	34.756	164	97	6	88	244	54	214	4.49e-15	77.0
MsaG031821	AT1G10240.1	34.756	164	97	6	88	244	54	214	4.49e-15	77.0

Find 80 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGGGCTTTGGCAGATGCTTC+TGG	0.082781	6:-36698512	MsaT031821.1:CDS
TTTGTTCATGTCAAGGTTAC+AGG	0.251328	6:-36698796	MsaT031821.1:CDS
GGGCTTTGGCAGATGCTTCT+GGG	0.266190	6:-36698511	MsaT031821.1:CDS
CTGGGCAAAACCAAACATTT+TGG	0.278132	6:+36697311	None:intergenic
GATCACAATCATGCTATGTT+AGG	0.329562	6:-36698641	MsaT031821.1:CDS
TGATGATCTTCCAAAATGTT+TGG	0.355568	6:-36697321	MsaT031821.1:CDS
TCCGATTATGATAAAAGATA+TGG	0.367150	6:-36698999	MsaT031821.1:CDS
AACTGAAAATCCTGACGTTC+TGG	0.369216	6:+36698874	None:intergenic
AAACAATGATTTACGTTGCT+TGG	0.383660	6:+36698439	None:intergenic
CACGAGCATTTCAAAACAAC+TGG	0.401503	6:+36697410	None:intergenic
GGAAGTTCAAATTCAGTTGA+AGG	0.407056	6:-36699049	MsaT031821.1:CDS
TCTTGGTTTGCCAGAACGTC+AGG	0.409357	6:-36698884	MsaT031821.1:CDS
TCAAGGTTACAGGGAGGATA+GGG	0.412309	6:-36698786	MsaT031821.1:CDS
GTACCAAATGTATGGGGCTT+TGG	0.414713	6:-36698525	MsaT031821.1:CDS
CTGCCAAAGCCCCATACATT+TGG	0.417656	6:+36698522	None:intergenic
AAATTCAGTTGAAGGCTTAG+AGG	0.428492	6:-36699041	MsaT031821.1:CDS
GAAATGCTCGTGTCTTAGAA+TGG	0.443162	6:-36697399	MsaT031821.1:CDS
TTGGAAGATCATCAAAATCA+AGG	0.448932	6:+36697330	None:intergenic
TTTAGCAAACTTGGACCACC+TGG	0.451664	6:+36697292	None:intergenic
TGCAAAATTTCGAGTCCACT+TGG	0.456820	6:-36698705	MsaT031821.1:CDS
ATAAGACCGTACCAAATGTA+TGG	0.463653	6:-36698533	MsaT031821.1:CDS
GGCTTTGGCAGATGCTTCTG+GGG	0.464116	6:-36698510	MsaT031821.1:CDS
TTTGAAGGACATGCTGAGCC+AGG	0.465178	6:-36696009	MsaT031821.1:intron
CCATCAGTCGCATCAATGTT+GGG	0.475672	6:-36696893	MsaT031821.1:CDS
ACCTTTGTTTGTTCATGTCA+AGG	0.486075	6:-36698803	MsaT031821.1:CDS
GACGGTACACGTCTCAATCC+TGG	0.486316	6:+36695991	None:intergenic
CAAAATACCGTGGTGATGGT+AGG	0.487602	6:-36697460	MsaT031821.1:CDS
ACCGTGGTGATGGTAGGGTT+TGG	0.493348	6:-36697454	MsaT031821.1:CDS
ATGAACAAACAAAGGTCTGC+TGG	0.497463	6:+36698810	None:intergenic
TCCATCAGTCGCATCAATGT+TGG	0.500041	6:-36696894	MsaT031821.1:CDS
TGTTGTACGCATCCTCGTCT+TGG	0.504705	6:+36696832	None:intergenic
ATTTACGTTGCTTGGCAACT+TGG	0.506669	6:+36698447	None:intergenic
GTCAAGGTTACAGGGAGGAT+AGG	0.518923	6:-36698787	MsaT031821.1:CDS
GCTTTGGCAGATGCTTCTGG+GGG	0.524995	6:-36698509	MsaT031821.1:CDS
AAAATACCGTGGTGATGGTA+GGG	0.526246	6:-36697459	MsaT031821.1:CDS
TTCACTTACATTGTAACCCT+CGG	0.528797	6:+36696809	None:intergenic
TGTCTTAGAATGGAATCGCT+TGG	0.529768	6:-36697389	MsaT031821.1:CDS
CAAAGCAATGGAGATGTCAA+TGG	0.531347	6:-36699070	MsaT031821.1:CDS
CCCAACATTGATGCGACTGA+TGG	0.535314	6:+36696893	None:intergenic
TAAGACCGTACCAAATGTAT+GGG	0.537974	6:-36698532	MsaT031821.1:CDS
ACACCATCGCGCTCTAACAA+AGG	0.543044	6:+36699235	None:intergenic
ATTGAGCGTAGTCGAAAAGC+TGG	0.551197	6:-36698557	MsaT031821.1:CDS
CACAATCATGCTATGTTAGG+AGG	0.553509	6:-36698638	MsaT031821.1:CDS
TTGTTCATGTCAAGGTTACA+GGG	0.556666	6:-36698795	MsaT031821.1:CDS
TGATATAATGAAGATTGAGC+TGG	0.557270	6:-36698975	MsaT031821.1:CDS
GTTTCAAAATACCGTGGTGA+TGG	0.561793	6:-36697464	MsaT031821.1:CDS
AGAAATGGACGGACGTTCAG+AGG	0.566572	6:-36699266	None:intergenic
TCGTAAGGGGCAAGTGGTGA+GGG	0.567327	6:-36698852	MsaT031821.1:CDS
ACGCTCAATTTCAGCTATGT+CGG	0.568884	6:+36698571	None:intergenic
TTCGTAAGGGGCAAGTGGTG+AGG	0.571006	6:-36698853	MsaT031821.1:CDS
ATCCCTTCGTCAGTTGACAT+TGG	0.575813	6:+36696858	None:intergenic
TTCAGTTCGTAAGGGGCAAG+TGG	0.578338	6:-36698858	MsaT031821.1:CDS
AGAAAGGCAAGAAATGTCCA+TGG	0.584202	6:-36697501	MsaT031821.1:CDS
GAAAGGCAAGAAATGTCCAT+GGG	0.588349	6:-36697500	MsaT031821.1:CDS
CAAGTGGTGAGGGATCGAAA+TGG	0.589736	6:-36698842	MsaT031821.1:CDS
ACATTGATGCGACTGATGGA+AGG	0.591550	6:+36696897	None:intergenic
AAACCAAGAGTAAAACATGT+AGG	0.598768	6:+36698898	None:intergenic
AACCGTGAAAATAAACCCCA+TGG	0.607032	6:+36697484	None:intergenic
CAAGGTTACAGGGAGGATAG+GGG	0.609406	6:-36698785	MsaT031821.1:CDS
AAGGTTACAGGGAGGATAGG+GGG	0.615842	6:-36698784	MsaT031821.1:CDS
AAAGCCCCATACATTTGGTA+CGG	0.620279	6:+36698527	None:intergenic
CACCAATGTCAACTGACGAA+GGG	0.623535	6:-36696860	MsaT031821.1:CDS
ACAAATTGCGAACAAAGCAA+TGG	0.627176	6:-36699082	MsaT031821.1:CDS
ACACCAATGTCAACTGACGA+AGG	0.627495	6:-36696861	MsaT031821.1:CDS
CGAAGGGATTCTCCAAGACG+AGG	0.638814	6:-36696844	MsaT031821.1:CDS
TTCACGGTTTCAAAATACCG+TGG	0.639319	6:-36697470	MsaT031821.1:CDS
GCCTCGACAAAATATCCAAG+TGG	0.642964	6:+36698690	None:intergenic
ACCTTGACATGAACAAACAA+AGG	0.644270	6:+36698802	None:intergenic
TTGGTATTCAGAGAAATGGA+CGG	0.649153	6:-36699277	None:intergenic
AATCCTTTGTTAGAGCGCGA+TGG	0.654133	6:-36699238	MsaT031821.1:CDS
CAAGGTACAGAAGCACAGCA+AGG	0.654464	6:+36697348	None:intergenic
TTAGCAAACTTGGACCACCT+GGG	0.656483	6:+36697293	None:intergenic
ACAGCAAGGATATGATCGCA+CGG	0.663089	6:+36697362	None:intergenic
GCCAAACCCTACCATCACCA+CGG	0.683425	6:+36697453	None:intergenic
GAGGATGCGTACAACACCGA+GGG	0.685934	6:-36696825	MsaT031821.1:CDS
ATGTTAGGAGGTACTCTGTG+TGG	0.688101	6:-36698626	MsaT031821.1:CDS
AAGACCGTACCAAATGTATG+GGG	0.707217	6:-36698531	MsaT031821.1:CDS
TTCATGTCAAGGTTACAGGG+AGG	0.709283	6:-36698792	MsaT031821.1:CDS
CGAGGATGCGTACAACACCG+AGG	0.735213	6:-36696826	MsaT031821.1:CDS
AAAGGCAAGAAATGTCCATG+GGG	0.742239	6:-36697499	MsaT031821.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	36696004	36699284	36696004	ID=MsaG031821
Chr6	mRNA	36696004	36699284	36696004	ID=MsaT031821.1;Parent=MsaG031821
Chr6	exon	36696004	36696024	36696004	ID=MsaT031821.1.exon5;Parent=MsaT031821.1
Chr6	CDS	36696004	36696024	36696004	ID=cds.MsaT031821.1;Parent=MsaT031821.1
Chr6	exon	36696818	36696929	36696818	ID=MsaT031821.1.exon4;Parent=MsaT031821.1
Chr6	CDS	36696818	36696929	36696818	ID=cds.MsaT031821.1;Parent=MsaT031821.1
Chr6	exon	36697302	36697521	36697302	ID=MsaT031821.1.exon3;Parent=MsaT031821.1
Chr6	CDS	36697302	36697521	36697302	ID=cds.MsaT031821.1;Parent=MsaT031821.1
Chr6	exon	36698453	36699137	36698453	ID=MsaT031821.1.exon2;Parent=MsaT031821.1
Chr6	CDS	36698453	36699137	36698453	ID=cds.MsaT031821.1;Parent=MsaT031821.1
Chr6	exon	36699222	36699284	36699222	ID=MsaT031821.1.exon1;Parent=MsaT031821.1
Chr6	CDS	36699222	36699284	36699222	ID=cds.MsaT031821.1;Parent=MsaT031821.1

Gene Sequence

>MsaT031821.1

ATGGACGGACGTTCAGAGGCTGTGAATCCTTTGTTAGAGCGCGATGGTGTGAGAATTTCAAGAGATTTTGAAGCTGAAAGTGGAGGTAATTACAACACAAATTGCGAACAAAGCAATGGAGATGTCAATGGAAGTTCAAATTCAGTTGAAGGCTTAGAGGATGAAACTAATGAAGTCAATCCGATTATGATAAAAGATATGGTTGATATAATGAAGATTGAGCTGGAAAACTTTTGTGTGGCTGATGTGGAAAGATATGAATTTGTTGCTTTAGATGTTGCCTACATGTTTTACTCTTGGTTTGCCAGAACGTCAGGATTTTCAGTTCGTAAGGGGCAAGTGGTGAGGGATCGAAATGGTGAAGTCGTCCAGCAGACCTTTGTTTGTTCATGTCAAGGTTACAGGGAGGATAGGGGGTTAACAATGGAAAATCGAAAGCGTGAGCCAAAAAATGAAACAAGATGTGGGTGTAATGCAAAATTTCGAGTCCACTTGGATATTTTGTCGAGGCATTGGTATGTTACTGTATTTGAATTTGATCACAATCATGCTATGTTAGGAGGTACTCTGTGTGGAATGTTGCCAGCGTATAGAAAAATGAGTGTAGCCGACATAGCTGAAATTGAGCGTAGTCGAAAAGCTGGTATAAGACCGTACCAAATGTATGGGGCTTTGGCAGATGCTTCTGGGGGTTTTCATAAGGTAGGATTTGTTAAAAAAGATTTGTACAACCAAGTTGCCAAGCAACAAAGGCAAGAAATGTCCATGGGGTTTATTTTCACGGTTTCAAAATACCGTGGTGATGGTAGGGTTTGGCATGTGACATTTTGTGAAGAACCAGTTGTTTTGAAATGCTCGTGTCTTAGAATGGAATCGCTTGGTTTGCCGTGCGATCATATCCTTGCTGTGCTTCTGTACCTTGATTTTGATGATCTTCCAAAATGTTTGGTTTTGCCCAGGTGGTCCAAACGTTGTTGTCCTTCCATCAGTCGCATCAATGTTGGGCAGACACAAACACCAATGTCAACTGACGAAGGGATTCTCCAAGACGAGGATGCGTACAACACCGAGGGTTACAATGACATGCTGAGCCAGGATTGA

Protein sequence

>MsaT031821.1

MDGRSEAVNPLLERDGVRISRDFEAESGGNYNTNCEQSNGDVNGSSNSVEGLEDETNEVNPIMIKDMVDIMKIELENFCVADVERYEFVALDVAYMFYSWFARTSGFSVRKGQVVRDRNGEVVQQTFVCSCQGYREDRGLTMENRKREPKNETRCGCNAKFRVHLDILSRHWYVTVFEFDHNHAMLGGTLCGMLPAYRKMSVADIAEIERSRKAGIRPYQMYGALADASGGFHKVGFVKKDLYNQVAKQQRQEMSMGFIFTVSKYRGDGRVWHVTFCEEPVVLKCSCLRMESLGLPCDHILAVLLYLDFDDLPKCLVLPRWSKRCCPSISRINVGQTQTPMSTDEGILQDEDAYNTEGYNDMLSQD*