AlfalfaGEDB | MsaG031933

M. sativa ssp. caerulea / MsaG031933

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031933	XP_024634655.1	74.879	207	37	1	8	214	1	192	3.07e-99	297

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031933	sp\|Q5JMK6\|BZP06_ORYSJ	45.263	95	52	0	108	202	137	231	1.79e-18	84.7

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031933	tr\|A0A2K3MUT1\|A0A2K3MUT1_TRIPR	55.959	193	82	3	14	205	1	191	2.37e-56	187

TFs/TRs:

Gene ID	Type	Classification
MsaG031933	TF	bZIP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000083	MsaG031933	0.814986	2.014676e-51	3.893273e-49
MsaG000321	MsaG031933	0.839912	2.202679e-57	8.575553e-55
MsaG001169	MsaG031933	0.806460	1.379441e-49	2.164283e-47
MsaG003778	MsaG031933	0.809197	3.636440e-50	6.090598e-48
MsaG005408	MsaG031933	0.805462	2.232143e-49	3.420495e-47
MsaG006150	MsaG031933	0.800912	1.930959e-48	2.665006e-46
MsaG006256	MsaG031933	0.845975	5.456881e-59	2.582342e-56
MsaG006257	MsaG031933	0.821310	7.592859e-53	1.728856e-50
MsaG006387	MsaG031933	0.813056	5.346905e-51	9.843880e-49
MsaG006388	MsaG031933	0.809761	2.754919e-50	4.677576e-48
MsaG006999	MsaG031933	0.806764	1.191098e-49	1.882144e-47
MsaG007177	MsaG031933	0.807770	7.307768e-50	1.182684e-47
MsaG007658	MsaG031933	0.820128	1.414843e-52	3.122450e-50
MsaG009848	MsaG031933	0.822302	4.486230e-53	1.048885e-50
MsaG010328	MsaG031933	0.808555	4.980999e-50	8.214816e-48
MsaG010566	MsaG031933	0.828900	1.245912e-54	3.494181e-52
MsaG011508	MsaG031933	0.805262	2.456859e-49	3.747389e-47
MsaG011461	MsaG031933	0.828386	1.656304e-54	4.578872e-52
MsaG011891	MsaG031933	0.802281	1.014769e-48	1.444789e-46
MsaG012169	MsaG031933	0.800408	2.444090e-48	3.335203e-46
MsaG012213	MsaG031933	0.815551	1.511193e-51	2.962293e-49
MsaG012586	MsaG031933	0.803171	6.661581e-49	9.680442e-47
MsaG041894	MsaG031933	0.800758	2.075825e-48	2.855098e-46
MsaG042087	MsaG031933	0.802057	1.127837e-48	1.597568e-46
MsaG042511	MsaG031933	0.814995	2.005580e-51	3.876586e-49
MsaG042892	MsaG031933	0.807430	8.622082e-50	1.384065e-47
MsaG043178	MsaG031933	0.839372	3.038773e-57	1.163067e-54
MsaG043226	MsaG031933	0.833420	9.773416e-56	3.123688e-53
MsaG043354	MsaG031933	0.804776	3.100552e-49	4.676230e-47
MsaG045290	MsaG031933	0.803947	4.607123e-49	6.816223e-47
MsaG046018	MsaG031933	0.820429	1.208068e-52	2.687472e-50
MsaG046408	MsaG031933	0.805779	1.916507e-49	2.958688e-47
MsaG046700	MsaG031933	0.808789	4.441120e-50	7.365998e-48
MsaG046944	MsaG031933	0.801417	1.524076e-48	2.127684e-46
MsaG006154	MsaG031933	0.808080	6.282245e-50	1.024330e-47
MsaG009464	MsaG031933	0.801286	1.620403e-48	2.255413e-46
MsaG008905	MsaG031933	0.815199	1.808236e-51	3.513150e-49
MsaG011916	MsaG031933	0.816157	1.108757e-51	2.207171e-49
MsaG018328	MsaG031933	0.827008	3.535053e-54	9.401691e-52
MsaG018567	MsaG031933	0.829161	1.077304e-54	3.043725e-52
MsaG020224	MsaG031933	0.805690	2.000071e-49	3.081332e-47
MsaG027945	MsaG031933	0.812276	7.904859e-51	1.427270e-48
MsaG028065	MsaG031933	0.802523	9.052139e-49	1.296002e-46
MsaG032938	MsaG031933	0.815269	1.744542e-51	3.395450e-49
MsaG031933	MsaG034539	0.809191	3.646399e-50	6.106471e-48
MsaG031933	MsaG031810	0.801083	1.782681e-48	2.469863e-46
MsaG031933	MsaG033058	0.812661	6.517385e-51	1.188094e-48
MsaG031933	MsaG037322	0.803810	4.917663e-49	7.252536e-47
MsaG014381	MsaG031933	0.805403	2.296310e-49	3.514023e-47
MsaG014543	MsaG031933	0.805266	2.452334e-49	3.740836e-47
MsaG017203	MsaG031933	0.802919	7.507314e-49	1.084582e-46
MsaG017348	MsaG031933	0.820961	9.132033e-53	2.060212e-50
MsaG017459	MsaG031933	0.813043	5.381420e-51	9.904177e-49
MsaG018876	MsaG031933	0.800133	2.778919e-48	3.768454e-46
MsaG019273	MsaG031933	0.804284	3.923769e-49	5.850871e-47
MsaG019358	MsaG031933	0.801683	1.344833e-48	1.888823e-46
MsaG020332	MsaG031933	0.804337	3.824335e-49	5.709643e-47
MsaG020469	MsaG031933	0.807859	6.998672e-50	1.135096e-47
MsaG020648	MsaG031933	0.805290	2.423864e-49	3.699513e-47
MsaG020684	MsaG031933	0.813348	4.615782e-51	8.559851e-49
MsaG021395	MsaG031933	0.801008	1.845821e-48	2.553096e-46
MsaG023415	MsaG031933	0.849558	5.689314e-60	3.037706e-57
MsaG023664	MsaG031933	0.805268	2.449540e-49	3.736778e-47
MsaG023807	MsaG031933	0.803838	4.852271e-49	7.160709e-47
MsaG023892	MsaG031933	0.801156	1.722246e-48	2.390134e-46
MsaG026637	MsaG031933	0.804749	3.141306e-49	4.734790e-47
MsaG027006	MsaG031933	0.813641	3.981461e-51	7.438165e-49
MsaG027792	MsaG031933	0.809735	2.791254e-50	4.736201e-48
MsaG027829	MsaG031933	0.809415	3.266015e-50	5.499324e-48
MsaG027950	MsaG031933	0.801510	1.458631e-48	2.040611e-46
MsaG028250	MsaG031933	0.822213	4.705230e-53	1.097416e-50
MsaG028935	MsaG031933	0.813798	3.678364e-51	6.899302e-49
MsaG028982	MsaG031933	0.817139	6.696050e-52	1.367017e-49
MsaG030605	MsaG031933	0.810202	2.216783e-50	3.804186e-48
MsaG030803	MsaG031933	0.805649	2.040054e-49	3.139881e-47
MsaG031064	MsaG031933	0.805755	1.938556e-49	2.991074e-47
MsaG031092	MsaG031933	0.802721	8.244983e-49	1.185743e-46
MsaG035317	MsaG031933	0.801939	1.192181e-48	1.684208e-46
MsaG035456	MsaG031933	0.802104	1.102938e-48	1.563946e-46
MsaG035659	MsaG031933	0.805317	2.392778e-49	3.654417e-47
MsaG036122	MsaG031933	0.824473	1.403068e-53	3.478948e-51
MsaG036162	MsaG031933	0.814851	2.158622e-51	4.157141e-49
MsaG037439	MsaG031933	0.818464	3.373780e-52	7.126704e-50
MsaG040264	MsaG031933	0.804459	3.608020e-49	5.401704e-47
MsaG040342	MsaG031933	0.806052	1.679984e-49	2.610343e-47
MsaG040499	MsaG031933	0.809829	2.664248e-50	4.531133e-48
MsaG040583	MsaG031933	0.827270	3.061912e-54	8.203656e-52
MsaG040907	MsaG031933	0.829286	1.005426e-54	2.850716e-52
MsaG041534	MsaG031933	0.829209	1.049306e-54	2.968468e-52

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031933	MtrunA17_Chr3g0105741	66.667	75	21	3	22	95	9	80	2.37e-25	98.2
MsaG031933	MtrunA17_Chr3g0105741	47.778	90	44	3	7	95	89	176	1.27e-15	72.4
MsaG031933	MtrunA17_Chr2g0316551	41.667	96	56	0	107	202	207	302	1.37e-17	80.1
MsaG031933	MtrunA17_Chr4g0040891	43.158	95	54	0	108	202	194	288	2.31e-17	79.3
MsaG031933	MtrunA17_Chr2g0325131	43.158	95	54	0	108	202	191	285	3.99e-17	79.0
MsaG031933	MtrunA17_Chr5g0432701	28.188	149	99	1	82	222	125	273	2.17e-11	62.4
MsaG031933	MtrunA17_Chr3g0107491	38.298	94	58	0	107	200	176	269	2.99e-11	62.0
MsaG031933	MtrunA17_Chr4g0036071	35.922	103	66	0	108	210	360	462	6.36e-11	61.2
MsaG031933	MtrunA17_Chr6g0463571	36.792	106	67	0	107	212	150	255	9.07e-11	60.5
MsaG031933	MtrunA17_Chr2g0329551	36.458	96	61	0	107	202	220	315	9.51e-11	60.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031933	AT2G42380.2	40.179	112	67	0	91	202	169	280	1.52e-18	82.8
MsaG031933	AT3G58120.1	40.708	113	66	1	90	202	185	296	2.46e-18	82.4
MsaG031933	AT2G42380.5	41.667	96	56	0	91	186	169	264	4.64e-16	75.5
MsaG031933	AT3G58120.2	42.268	97	55	1	90	186	185	280	7.11e-16	75.1
MsaG031933	AT2G42380.1	35.714	112	61	1	91	202	169	269	1.31e-13	68.9
MsaG031933	AT5G07160.1	40.860	93	55	0	108	200	48	140	5.67e-12	62.0
MsaG031933	AT1G43700.1	35.593	118	69	1	83	200	176	286	1.09e-11	63.5
MsaG031933	AT1G06850.1	33.333	120	80	0	107	226	147	266	3.65e-11	62.0
MsaG031933	AT2G40620.1	38.298	94	58	0	107	200	147	240	4.22e-11	62.0

Find 39 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAGCTATTTCAAGTCTTAAT+TGG	0.226858	6:+40111748	None:intergenic
GCTCGATTATATTGCTGATT+TGG	0.235809	6:-40112406	MsaT031933.1:CDS
GCATGACCAAGATTTGATTT+TGG	0.261059	6:+40113051	None:intergenic
TTTGTACCAGTCATTCTCTT+TGG	0.270280	6:+40113264	None:intergenic
GTATACCGTTTGAGCCTCTT+TGG	0.278573	6:+40112952	None:intergenic
TTGTACCAGTCATTCTCTTT+GGG	0.334410	6:+40113265	None:intergenic
ATAAGAGAGCTGAGGTGAAT+AGG	0.385871	6:-40111594	MsaT031933.1:CDS
TTCGATCATGGCAACCCTCT+TGG	0.403712	6:-40113161	MsaT031933.1:CDS
AGTGTACCAAAATCAAATCT+TGG	0.459311	6:-40113057	MsaT031933.1:CDS
CGTCATCAACATTTCGATCA+TGG	0.470936	6:-40113173	MsaT031933.1:CDS
GCTGAGAAGAACCACATCAT+TGG	0.483237	6:-40113030	MsaT031933.1:CDS
TATTGCTGATTTGGAGCGGA+TGG	0.492832	6:-40112397	MsaT031933.1:CDS
GAGCTGAGGTGAATAGGCTA+AGG	0.500065	6:-40111588	MsaT031933.1:CDS
TGGATCCAAAGAGGCTCAAA+CGG	0.511736	6:-40112957	MsaT031933.1:intron
AAACAAGAGGCGAGTAGCAG+TGG	0.525757	6:-40113120	MsaT031933.1:CDS
TCTTAATTGGTGATGTTCCA+TGG	0.529196	6:+40111761	None:intergenic
GGCATCCCAAAGAGAATGAC+TGG	0.538746	6:-40113270	MsaT031933.1:CDS
GTGCAGAAATTCGATTTGCT+AGG	0.542578	6:+40112448	None:intergenic
AACATGTTGCACACAGAAGA+GGG	0.550817	6:-40113243	MsaT031933.1:CDS
AGACTTCAACTTGTGGGCGA+AGG	0.559195	6:+40111808	None:intergenic
GATTGAGAATAAGAGAGCTG+AGG	0.559603	6:-40111602	MsaT031933.1:CDS
GCATCTGCATGTGTTGGTGT+TGG	0.564639	6:-40113000	MsaT031933.1:CDS
GAGAAGAACCACATCATTGG+CGG	0.593377	6:-40113027	MsaT031933.1:CDS
ATGCACTACCGCCAATGATG+TGG	0.601403	6:+40113019	None:intergenic
TTGCTGAAGCACAAAACAAG+AGG	0.602002	6:-40111546	MsaT031933.1:intron
AAACATGTTGCACACAGAAG+AGG	0.606246	6:-40113244	MsaT031933.1:CDS
GGTAGTGCATCTGCATGTGT+TGG	0.606657	6:-40113006	MsaT031933.1:CDS
TCAGCAGTGGTTGTTGACCA+TGG	0.606900	6:-40111778	MsaT031933.1:CDS
AGCTGAGGTGAATAGGCTAA+GGG	0.613143	6:-40111587	MsaT031933.1:CDS
ATGGTTAGACCCTCTTCACA+TGG	0.614802	6:-40113198	MsaT031933.1:CDS
ATTATATTGCTGATTTGGAG+CGG	0.619255	6:-40112401	MsaT031933.1:CDS
AAAGAAAGGATACTTCAAGA+AGG	0.624481	6:-40111717	MsaT031933.1:intron
AGGTCAATGCTCTTCCAAGA+GGG	0.634364	6:+40113147	None:intergenic
TACTCGCCTCTTGTTTACCG+AGG	0.637734	6:+40113127	None:intergenic
CATTGACCTCGGTAAACAAG+AGG	0.644199	6:-40113133	MsaT031933.1:CDS
GATGACGATCCATGTGAAGA+GGG	0.656652	6:+40113189	None:intergenic
GAGGTCAATGCTCTTCCAAG+AGG	0.660030	6:+40113146	None:intergenic
TGATGACGATCCATGTGAAG+AGG	0.681158	6:+40113188	None:intergenic
TCTTGGAAGAGCATTGACCT+CGG	0.690835	6:-40113144	MsaT031933.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	40111413	40113298	40111413	ID=MsaG031933
Chr6	mRNA	40111413	40113298	40111413	ID=MsaT031933.1;Parent=MsaG031933
Chr6	exon	40111413	40111452	40111413	ID=MsaT031933.1.exon5;Parent=MsaT031933.1
Chr6	CDS	40111413	40111452	40111413	ID=cds.MsaT031933.1;Parent=MsaT031933.1
Chr6	exon	40111547	40111628	40111547	ID=MsaT031933.1.exon4;Parent=MsaT031933.1
Chr6	CDS	40111547	40111628	40111547	ID=cds.MsaT031933.1;Parent=MsaT031933.1
Chr6	exon	40111718	40111844	40111718	ID=MsaT031933.1.exon3;Parent=MsaT031933.1
Chr6	CDS	40111718	40111844	40111718	ID=cds.MsaT031933.1;Parent=MsaT031933.1
Chr6	exon	40112383	40112473	40112383	ID=MsaT031933.1.exon2;Parent=MsaT031933.1
Chr6	CDS	40112383	40112473	40112383	ID=cds.MsaT031933.1;Parent=MsaT031933.1
Chr6	exon	40112958	40113298	40112958	ID=MsaT031933.1.exon1;Parent=MsaT031933.1
Chr6	CDS	40112958	40113298	40112958	ID=cds.MsaT031933.1;Parent=MsaT031933.1

Gene Sequence

>MsaT031933.1

ATGAAGGGCATCCCAAAGAGAATGACTGGTACAAACATGTTGCACACAGAAGAGGGACCTGAGCCTAAAAAATCAAACATGGTTAGACCCTCTTCACATGGATCGTCATCAACATTTCGATCATGGCAACCCTCTTGGAAGAGCATTGACCTCGGTAAACAAGAGGCGAGTAGCAGTGGAGTCAAAGCATCTCCACAAGACAAAAAAACTAATAACATTAGTGTACCAAAATCAAATCTTGGTCATGCTGAGAAGAACCACATCATTGGCGGTAGTGCATCTGCATGTGTTGGTGTTGGTGATCAAGCAACACAAAAACTGGATCCAAAGAGGCTCAAACGGATCCTAGCAAATCGAATTTCTGCACAAAAATCGAGATTGAAAAAGCTCGATTATATTGCTGATTTGGAGCGGATGGAAAAATATTTGCAGGATGAGTTATCTTTCCTTCGCCCACAAGTTGAAGTCTACAAAAATCAGCAGTGGTTGTTGACCATGGAACATCACCAATTAAGACTTGAAATAGCTGTACGAGAAAAAGAAAGGATACTTCAAGAAGTGGAGATTGAGAATAAGAGAGCTGAGGTGAATAGGCTAAGGGAGCTTCAGAAGAAACTTGTTGCTGAAGCACAAAACAAGAGGGTTTGTATATTAAAAATAATATATCATACTCATACATGA

Protein sequence

>MsaT031933.1

MKGIPKRMTGTNMLHTEEGPEPKKSNMVRPSSHGSSSTFRSWQPSWKSIDLGKQEASSSGVKASPQDKKTNNISVPKSNLGHAEKNHIIGGSASACVGVGDQATQKLDPKRLKRILANRISAQKSRLKKLDYIADLERMEKYLQDELSFLRPQVEVYKNQQWLLTMEHHQLRLEIAVREKERILQEVEIENKRAEVNRLRELQKKLVAEAQNKRVCILKIIYHTHT*