AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG031997


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG031997 MtrunA17_Chr6g0463941 88.174 668 51 8 1 662 1 646 0.0 815
MsaG031997 MtrunA17_Chr1g0201941 55.102 686 225 18 1 658 1 631 0.0 597
MsaG031997 MtrunA17_Chr1g0201911 42.123 603 236 13 2 600 3 496 8.80e-126 384
MsaG031997 MtrunA17_Chr2g0290511 31.597 288 145 7 281 568 115 350 9.00e-35 136
MsaG031997 MtrunA17_Chr2g0290511 39.796 98 56 2 54 149 261 357 1.30e-16 82.4
MsaG031997 MtrunA17_Chr1g0198171 52.756 127 55 2 54 175 113 239 1.12e-34 138
MsaG031997 MtrunA17_Chr1g0198171 45.652 92 48 2 476 566 110 200 3.10e-19 91.7
MsaG031997 MtrunA17_Chr7g0265831 62.500 104 33 3 46 145 108 209 3.74e-33 133
MsaG031997 MtrunA17_Chr7g0265831 44.330 97 52 2 476 571 111 206 1.05e-18 89.7
MsaG031997 MtrunA17_Chr7g0265831 42.500 80 46 0 277 356 285 364 4.18e-12 68.9
MsaG031997 MtrunA17_Chr1g0179191 64.583 96 31 2 46 140 124 217 4.40e-32 130
MsaG031997 MtrunA17_Chr1g0179191 46.237 93 48 2 476 567 127 218 3.17e-19 91.7
MsaG031997 MtrunA17_Chr1g0179191 37.383 107 67 0 251 357 264 370 3.11e-14 75.9
MsaG031997 MtrunA17_Chr7g0273941 57.000 100 34 2 480 570 381 480 1.78e-28 119
MsaG031997 MtrunA17_Chr7g0273941 41.837 98 47 2 55 142 381 478 5.92e-16 81.3
MsaG031997 MtrunA17_Chr1g0190851 59.783 92 35 1 480 569 418 509 1.17e-26 114
MsaG031997 MtrunA17_Chr1g0190851 39.785 93 53 2 53 142 416 508 4.56e-14 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG031997 AT1G76880.1 57.099 324 93 8 43 359 49 333 1.50e-93 301
MsaG031997 AT1G76880.1 65.584 154 38 3 458 598 382 533 4.17e-60 212
MsaG031997 AT1G76880.1 46.739 92 48 1 50 140 403 494 3.75e-19 92.0
MsaG031997 AT1G76880.1 47.253 91 47 1 479 569 60 149 6.35e-19 91.3
MsaG031997 AT1G76890.2 49.062 320 130 7 52 357 38 338 8.30e-83 272
MsaG031997 AT1G76890.2 64.029 139 40 3 459 597 378 506 4.08e-49 181
MsaG031997 AT1G76890.2 44.565 92 50 1 52 142 394 485 1.82e-19 93.2
MsaG031997 AT1G76890.2 43.182 88 49 1 479 566 40 126 5.07e-17 85.5
MsaG031997 AT5G28300.1 36.789 299 139 9 281 569 300 558 2.66e-44 168
MsaG031997 AT5G28300.1 41.667 108 52 4 48 144 452 559 2.52e-15 80.1
MsaG031997 AT5G03680.1 34.202 307 142 7 55 356 119 370 8.28e-44 166
MsaG031997 AT5G03680.1 44.211 95 51 2 480 573 119 212 5.07e-19 91.7
MsaG031997 AT1G33240.3 59.649 114 35 1 54 167 61 163 3.44e-38 150
MsaG031997 AT1G33240.1 59.649 114 35 1 54 167 61 163 6.80e-38 150
MsaG031997 AT3G10000.1 57.143 105 43 2 38 140 71 175 1.37e-30 126
MsaG031997 AT3G10000.1 44.086 93 51 1 476 567 84 176 1.51e-20 95.9
MsaG031997 AT3G10000.2 53.846 104 38 2 38 140 71 165 7.63e-27 114
MsaG031997 AT3G10000.2 41.304 92 45 1 476 567 84 166 2.09e-17 85.9
MsaG031997 AT5G47660.1 51.685 89 41 1 480 568 303 389 8.21e-22 98.6
MsaG031997 AT5G47660.1 47.059 85 40 3 55 137 303 384 4.58e-14 75.1
MsaG031997 AT1G33240.2 38.655 119 71 2 55 171 396 514 3.19e-19 92.4
MsaG031997 AT1G33240.2 54.430 79 25 1 89 167 57 124 1.97e-18 90.1

Find 195 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAAGATGCAAGTGTTAA+AGG 0.172516 6:-41918462 MsaT031997.1:CDS
TTCAGGTTTGATGAAGAAAA+TGG 0.194543 6:-41916112 MsaT031997.1:CDS
CCATTATGGGAGGAGATTTC+AGG 0.224552 6:-41916129 MsaT031997.1:CDS
TTTACCACCTCTTCCTTCTT+TGG 0.238671 6:+41917298 None:intergenic
ATGGACCTAAAGGGCCATTA+TGG 0.251711 6:-41916143 MsaT031997.1:CDS
TCGGTGTCGGTGTTGGTGTT+GGG 0.265380 6:+41916493 None:intergenic
GATATGAAGTACCAAGAAAA+TGG 0.297874 6:-41916162 MsaT031997.1:CDS
GGACATGTCTTTGAATCTTC+TGG 0.297895 6:+41916000 None:intergenic
TCCTCCCATAATGGCCCTTT+AGG 0.309914 6:+41916138 None:intergenic
GTTGTTGTTGATGATGGTAT+TGG 0.315589 6:+41917011 None:intergenic
AACAGGCGCCACCAGCAGCC+AGG 0.316128 6:-41915846 MsaT031997.1:CDS
GGTGGTGGTGGATCAATTTC+AGG 0.335799 6:-41918612 MsaT031997.1:CDS
GGAGTTGCACAAGAGGTTCT+TGG 0.339414 6:-41916763 MsaT031997.1:CDS
GTCGGTGTCGGTGTTGGTGT+TGG 0.352301 6:+41916492 None:intergenic
GTCACATCCGCCCTGGCTGC+TGG 0.353901 6:+41915835 None:intergenic
TACTTTGGCTAATAGGAAAA+TGG 0.355696 6:-41917396 MsaT031997.1:intron
GTTGAAGATAAGGTCTGATA+TGG 0.365393 6:-41918493 MsaT031997.1:CDS
AGAGGGTTATTAGTATTTGT+AGG 0.377717 6:+41916981 None:intergenic
TACTAAAGATGCTGCTGTTA+TGG 0.378392 6:-41916622 MsaT031997.1:CDS
AAAGCAACTGTTTCTTGTCT+TGG 0.384139 6:+41918516 None:intergenic
TCAGGTTTGATGAAGAAAAT+GGG 0.384923 6:-41916111 MsaT031997.1:CDS
AATAGGAAAATGGCAGATCT+TGG 0.385060 6:-41917386 MsaT031997.1:intron
CAAGTGTTAAAGGTCCCTTA+TGG 0.386222 6:-41918452 MsaT031997.1:CDS
TTGAGGTGGTGGTGGTTTGT+TGG 0.387596 6:+41915687 None:intergenic
ACTGGCAATGGTGCTGCTGC+TGG 0.390612 6:+41916468 None:intergenic
GCAATGGCCTCCACAACAAC+AGG 0.393419 6:-41915863 MsaT031997.1:CDS
TGAAGAAAATGGGGTACAAT+AGG 0.394111 6:-41916101 MsaT031997.1:CDS
ACAGCAGCAAGTGACGAATA+TGG 0.394354 6:-41916289 MsaT031997.1:CDS
TGCAAAGGATTAATAGAGAA+AGG 0.396339 6:-41916677 MsaT031997.1:CDS
CAAAGAGGTGCAAAGAGAAA+TGG 0.396790 6:-41916074 MsaT031997.1:CDS
CCTGAAATCTCCTCCCATAA+TGG 0.399545 6:+41916129 None:intergenic
AGGGGTGGGAATAGTACTAA+TGG 0.401850 6:+41917160 None:intergenic
AACGATGATGGCACCGTTGA+TGG 0.403172 6:-41915899 MsaT031997.1:CDS
GTCGGTGTTGGTGTTGGGGT+TGG 0.406448 6:+41916498 None:intergenic
CAGTTGCTTTGTTGAAGATA+AGG 0.412788 6:-41918503 MsaT031997.1:CDS
GACTCAACAGTGTTGGGAAC+AGG 0.413588 6:-41918675 MsaT031997.1:CDS
CCTTGAAACTTCATCCCATA+AGG 0.419165 6:+41918437 None:intergenic
GGAGTTTGTGTTTGAGTTTG+TGG 0.419992 6:+41917182 None:intergenic
GGAACAGGAGGAGGCAGCTC+AGG 0.420665 6:-41918660 MsaT031997.1:CDS
GAGGGTGTGGATAGAAGTTT+TGG 0.422223 6:-41918552 MsaT031997.1:CDS
TGTGTTTGAGTTTGTGGTGG+TGG 0.423701 6:+41917188 None:intergenic
AAGTTCGTCTTCGACTTCTT+CGG 0.423944 6:-41916889 MsaT031997.1:CDS
AGAAATGAAGCTGTTGTTGT+AGG 0.430108 6:+41917140 None:intergenic
GTAATAGTAATTTGAGGAAG+AGG 0.435660 6:+41916963 None:intergenic
TGTGTGTAAGACATTGGAAT+TGG 0.436193 6:+41917056 None:intergenic
ACCAACTTGATGCTCTATAC+AGG 0.438141 6:-41915969 MsaT031997.1:CDS
TGGACCTAAAGGGCCATTAT+GGG 0.446325 6:-41916142 MsaT031997.1:CDS
GGTGGTGGTGGTGTTATTGA+AGG 0.449272 6:+41917203 None:intergenic
GGTATTGCTGGTATTGGTAT+TGG 0.450653 6:+41916429 None:intergenic
ACGGTGTTGTTGTTCAATAC+AGG 0.451355 6:+41916558 None:intergenic
AAGTGTTAAAGGTCCCTTAT+GGG 0.453094 6:-41918451 MsaT031997.1:CDS
GACGGAAGAGGAAGAGGAAA+TGG 0.453743 6:-41916833 MsaT031997.1:CDS
CGAATCGACGGAAGAGGAAG+AGG 0.460674 6:-41916839 MsaT031997.1:CDS
GGTGTAGGTATTGCTGGTAT+TGG 0.461156 6:+41916423 None:intergenic
AGCTGCTGCGTCGAGGCCTG+AGG 0.462044 6:-41915923 MsaT031997.1:CDS
GAAATGAAGCTGTTGTTGTA+GGG 0.465028 6:+41917141 None:intergenic
AATGGTGCTGCTGCTGGTGT+CGG 0.467443 6:+41916474 None:intergenic
GCTGCTGCTGGTGTCGGTGT+CGG 0.467777 6:+41916480 None:intergenic
CCTTATGGGATGAAGTTTCA+AGG 0.471695 6:-41918437 MsaT031997.1:intron
GCATCAAGTTGGTGAAAGTA+AGG 0.472098 6:+41915979 None:intergenic
CTAGGGGACTCAACAGTGTT+GGG 0.473609 6:-41918681 MsaT031997.1:CDS
TGTGGAGGCCATTGCTGCTC+CGG 0.474042 6:+41915871 None:intergenic
GGCAATGGTACTGCTGGTAC+TGG 0.477694 6:+41916450 None:intergenic
GTTTGAGTTTGTGGTGGTGG+TGG 0.478900 6:+41917191 None:intergenic
TGGAAGTAGTAGAAATGAAG+AGG 0.480126 6:-41918571 MsaT031997.1:CDS
GCAAAGGATTAATAGAGAAA+GGG 0.481748 6:-41916676 MsaT031997.1:CDS
TACCAAGAAAATGGACCTAA+AGG 0.481995 6:-41916153 MsaT031997.1:CDS
GCTGGTGGCGCCTGTTGTTG+TGG 0.482373 6:+41915853 None:intergenic
TTTCTTTGAGAGACTAATGA+AGG 0.482390 6:-41916805 MsaT031997.1:CDS
CTTGAAACTTCATCCCATAA+GGG 0.483873 6:+41918438 None:intergenic
TAGTAGAAATGAAGAGGGTG+TGG 0.484511 6:-41918565 MsaT031997.1:CDS
GAGGGTTATTAGTATTTGTA+GGG 0.485687 6:+41916982 None:intergenic
CGGTGTCGGTGTTGGTGTTG+GGG 0.486815 6:+41916494 None:intergenic
GGAAACGACAACAATGGAAG+GGG 0.487557 6:-41916865 MsaT031997.1:CDS
CTCCATGGTCACATCCGCCC+TGG 0.491677 6:+41915828 None:intergenic
ATAGGAAAATGGCAGATCTT+GGG 0.492836 6:-41917385 MsaT031997.1:intron
ACCAAGAAAATGGACCTAAA+GGG 0.493139 6:-41916152 MsaT031997.1:CDS
ACATCAGCAGCAGCAACAAC+AGG 0.496241 6:-41916322 MsaT031997.1:CDS
GCAGCAGCAACAACAGGTTC+AGG 0.497898 6:-41916316 MsaT031997.1:CDS
GCTGGTGTCGGTGTCGGTGT+TGG 0.501369 6:+41916486 None:intergenic
GGCAGCTCAGGAGATGGAGC+AGG 0.501746 6:-41918648 MsaT031997.1:CDS
GGGGATCGAATCGACGGAAG+AGG 0.501747 6:-41916845 MsaT031997.1:CDS
GGAATTGGAAGTGTAGTTGA+TGG 0.503022 6:+41917071 None:intergenic
TGTTGCGGTGTAGGTATTGC+TGG 0.503047 6:+41916417 None:intergenic
GGCACCGTTGATGGTTCAGC+CGG 0.506059 6:-41915890 MsaT031997.1:CDS
TGTTGCTGCTGCTGATGTTG+TGG 0.506243 6:+41916327 None:intergenic
GAAGGTGATTGATGCATTGA+AGG 0.506401 6:+41917221 None:intergenic
AAAGAGGTGCAAAGAGAAAT+GGG 0.507157 6:-41916073 MsaT031997.1:CDS
GTTTGAACTTGTTGCGGTGT+AGG 0.516119 6:+41916408 None:intergenic
CACTCCTATGCAGCTATGCT+AGG 0.516756 6:-41918699 None:intergenic
AACAGCACCGGTCATTCCTC+AGG 0.519741 6:-41916361 MsaT031997.1:CDS
GGTGCCATCATCGTTCCCTC+AGG 0.524674 6:+41915907 None:intergenic
ACTCCTATGCAGCTATGCTA+GGG 0.525198 6:-41918698 None:intergenic
GAGGTGCTAGAGAAGAAGCT+TGG 0.525337 6:-41916713 MsaT031997.1:CDS
TGGTGGAAAGTGTGTAGGGT+TGG 0.526086 6:+41917031 None:intergenic
GAGAAAAGAGAAAGAGAGAG+AGG 0.527477 6:-41916732 MsaT031997.1:CDS
TGGTTCAGCCGGAGCAGCAA+TGG 0.528420 6:-41915879 MsaT031997.1:CDS
GCTAGGGGACTCAACAGTGT+TGG 0.529101 6:-41918682 MsaT031997.1:CDS
ACAGTGTTGGGAACAGGAGG+AGG 0.532710 6:-41918669 MsaT031997.1:CDS
GGGGTGGGAATAGTACTAAT+GGG 0.535590 6:+41917161 None:intergenic
TGATGCATGCAAGTTCATCT+AGG 0.535689 6:-41916233 MsaT031997.1:CDS
AACAAGAGGAGTTGCACAAG+AGG 0.535913 6:-41916770 MsaT031997.1:CDS
GAAATATTAGCGAATGAAGA+TGG 0.536488 6:+41916933 None:intergenic
TGTTGTTGCACTGTTACAGT+TGG 0.536680 6:+41916384 None:intergenic
GCTGCTGCGTCGAGGCCTGA+GGG 0.536821 6:-41915922 MsaT031997.1:CDS
GCTTACCATGATGGTGGTGG+TGG 0.537546 6:-41918624 MsaT031997.1:CDS
ACATCCGCCCTGGCTGCTGG+TGG 0.538679 6:+41915838 None:intergenic
TGCTCCGGCTGAACCATCAA+CGG 0.540154 6:+41915886 None:intergenic
TAATAGTAATTTGAGGAAGA+GGG 0.542471 6:+41916964 None:intergenic
GGCGAAGCCTGAGGAATGAC+CGG 0.543584 6:+41916354 None:intergenic
GAGGCCTGAGGGAACGATGA+TGG 0.544953 6:-41915911 MsaT031997.1:CDS
GGAGGAGGCAGCTCAGGAGA+TGG 0.546943 6:-41918654 MsaT031997.1:CDS
GGAGGTGTAGAGTTTAACAA+TGG 0.547437 6:+41917107 None:intergenic
TGAAGGAAAGCAACAAGAAG+AGG 0.547925 6:-41916023 MsaT031997.1:CDS
GGAAGAGGTGGTAAATCAGA+TGG 0.550653 6:-41917290 MsaT031997.1:CDS
TTGGATTGTGTGTAAGACAT+TGG 0.551286 6:+41917050 None:intergenic
ACAGGCGCCACCAGCAGCCA+GGG 0.555235 6:-41915845 MsaT031997.1:CDS
GTGCTAGAGAAGAAGCTTGG+AGG 0.555286 6:-41916710 MsaT031997.1:CDS
TTGTTGTTGTTGAGGAATGA+CGG 0.557825 6:+41916539 None:intergenic
TATTAGCGAATGAAGATGGT+GGG 0.558390 6:+41916937 None:intergenic
GTTGTTGATGATGGTATTGG+TGG 0.559014 6:+41917014 None:intergenic
TGCTGCTGATGTTGTGGCAA+CGG 0.560332 6:+41916333 None:intergenic
GAGGAAACGACAACAATGGA+AGG 0.562272 6:-41916867 MsaT031997.1:CDS
TGCGGCGCTTGTTGTTGTTG+AGG 0.562772 6:+41916531 None:intergenic
TCAACAACAACAAGCGCCGC+AGG 0.568754 6:-41916529 MsaT031997.1:CDS
TGAAGCTGTTGTTGTAGGGG+TGG 0.568902 6:+41917145 None:intergenic
ATTAGCGAATGAAGATGGTG+GGG 0.569029 6:+41916938 None:intergenic
TATCACAAGAGAACCAAAGA+AGG 0.569305 6:-41917311 MsaT031997.1:CDS
GGAGGTTGCAAGAGATGCAA+AGG 0.569352 6:-41916692 MsaT031997.1:CDS
TGATCGGCCGCGTCGAGATG+AGG 0.570258 6:-41915785 MsaT031997.1:CDS
TTTCAGGTGATGATGAAAGA+GGG 0.571339 6:-41918596 MsaT031997.1:CDS
TTGATCCACCACCACCATCA+TGG 0.573497 6:+41918619 None:intergenic
AAGAGAACCAAAGAAGGAAG+AGG 0.573797 6:-41917305 MsaT031997.1:CDS
GGTATTGGTGGAAAGTGTGT+AGG 0.574192 6:+41917026 None:intergenic
TTCATTCGCTAATATTTCAG+CGG 0.578885 6:-41916928 MsaT031997.1:CDS
TTCGTCTTCGACTTCTTCGG+AGG 0.579514 6:-41916886 MsaT031997.1:CDS
CAGGCAGAAGAACAAGGTGG+AGG 0.580136 6:-41915950 MsaT031997.1:CDS
CAGGTTTGATGAAGAAAATG+GGG 0.580467 6:-41916110 MsaT031997.1:CDS
GCTGGTATTGGTATTGGCAA+TGG 0.581527 6:+41916435 None:intergenic
GGTATTGGCAATGGTACTGC+TGG 0.582926 6:+41916444 None:intergenic
GGTACTGCTGGTACTGGCAA+TGG 0.588980 6:+41916456 None:intergenic
GGAGCAGGAGCTTACCATGA+TGG 0.589395 6:-41918633 MsaT031997.1:CDS
GTTTGTGTTTGAGTTTGTGG+TGG 0.590703 6:+41917185 None:intergenic
CTGAGAATGCTGAGAATGAT+CGG 0.591465 6:-41915801 MsaT031997.1:CDS
ATTTCAGGTGATGATGAAAG+AGG 0.592121 6:-41918597 MsaT031997.1:CDS
AGAACCAAAGAAGGAAGAGG+TGG 0.595193 6:-41917302 MsaT031997.1:CDS
GATGACGAGGACGAAGATGA+AGG 0.597081 6:-41915733 MsaT031997.1:CDS
AGCATTCTCAGCATCCTCCA+TGG 0.598685 6:+41915813 None:intergenic
GAATATTATGACGATGATGA+CGG 0.600596 6:-41915760 MsaT031997.1:CDS
GGCGCCACCAGCAGCCAGGG+CGG 0.602641 6:-41915842 MsaT031997.1:CDS
AGGGTGCAGCTGCTGCGTCG+AGG 0.603837 6:-41915930 MsaT031997.1:CDS
GGAAGTAGTAGAAATGAAGA+GGG 0.606377 6:-41918570 MsaT031997.1:CDS
TTCGGAGGAAACGACAACAA+TGG 0.607000 6:-41916871 MsaT031997.1:CDS
GGAGGTTGTTGAGAAACAAG+AGG 0.607799 6:-41916784 MsaT031997.1:CDS
CTTTGAGAGACTAATGAAGG+AGG 0.607887 6:-41916802 MsaT031997.1:CDS
GCCTGTATAGAGCATCAAGT+TGG 0.608740 6:+41915968 None:intergenic
GTATTGGTGGAAAGTGTGTA+GGG 0.609236 6:+41917027 None:intergenic
GAAGAGGAAGAGGAAATGGA+AGG 0.609651 6:-41916829 MsaT031997.1:CDS
TTAGCGAATGAAGATGGTGG+GGG 0.612373 6:+41916939 None:intergenic
CAAGTATTTCAAGAAAGTGA+AGG 0.613019 6:-41916040 MsaT031997.1:CDS
GTTGATGGAACAGTGGTGGT+AGG 0.616670 6:+41917086 None:intergenic
AAGGTGATTGATGCATTGAA+GGG 0.619014 6:+41917222 None:intergenic
TCAACAGTGTTGGGAACAGG+AGG 0.620361 6:-41918672 MsaT031997.1:CDS
GATGGAACAGTGGTGGTAGG+AGG 0.624878 6:+41917089 None:intergenic
GAAGCTGTTGTTGTAGGGGT+GGG 0.625788 6:+41917146 None:intergenic
TCTATACAGGCAGAAGAACA+AGG 0.628687 6:-41915956 MsaT031997.1:CDS
ATATTAGCGAATGAAGATGG+TGG 0.629833 6:+41916936 None:intergenic
ACCTAAAGGGCCATTATGGG+AGG 0.631216 6:-41916139 MsaT031997.1:CDS
TGTGGCAACGGCGAAGCCTG+AGG 0.633518 6:+41916345 None:intergenic
TTCAGGTGATGATGAAAGAG+GGG 0.634874 6:-41918595 MsaT031997.1:CDS
AGCCAGGGCGGATGTGACCA+TGG 0.636181 6:-41915830 MsaT031997.1:CDS
GGTGTAGAGTTTAACAATGG+AGG 0.640467 6:+41917110 None:intergenic
CTCCTATGCAGCTATGCTAG+GGG 0.640615 6:-41918697 None:intergenic
AGGAAACGACAACAATGGAA+GGG 0.641866 6:-41916866 MsaT031997.1:CDS
AGGCAGAAGAACAAGGTGGA+GGG 0.643787 6:-41915949 MsaT031997.1:CDS
GTTGGAGTTTGAACTTGTTG+CGG 0.644658 6:+41916402 None:intergenic
GGAGCTTACCATGATGGTGG+TGG 0.649488 6:-41918627 MsaT031997.1:CDS
GTGTTGTTGTTCAATACAGG+AGG 0.651178 6:+41916561 None:intergenic
AGTGCAACAACAAACAGCAC+CGG 0.652497 6:-41916373 MsaT031997.1:CDS
GGGGTTGGTGTAGTTTCCTG+CGG 0.653086 6:+41916513 None:intergenic
GGTGGCGCCTGTTGTTGTGG+AGG 0.655534 6:+41915856 None:intergenic
TCAGGTGATGATGAAAGAGG+GGG 0.658562 6:-41918594 MsaT031997.1:CDS
AAATGAAGCTGTTGTTGTAG+GGG 0.668647 6:+41917142 None:intergenic
GAAACGACAACAATGGAAGG+GGG 0.686144 6:-41916864 MsaT031997.1:CDS
TGCATGCAAGTTCATCTAGG+TGG 0.686396 6:-41916230 MsaT031997.1:CDS
GCAGGAGCTTACCATGATGG+TGG 0.707615 6:-41918630 MsaT031997.1:CDS
GTTGCGAAAAGTGACAACAA+TGG 0.712598 6:-41916264 MsaT031997.1:CDS
AAGTGTAGTTGATGGAACAG+TGG 0.713309 6:+41917079 None:intergenic
AGGTAGTGACAATTATGAAG+TGG 0.722373 6:-41915713 MsaT031997.1:CDS
GGTACAATAGGAATGCAAAG+AGG 0.724275 6:-41916089 MsaT031997.1:CDS
TGTAGTTGATGGAACAGTGG+TGG 0.725823 6:+41917082 None:intergenic
CAGGGCGGATGTGACCATGG+AGG 0.727693 6:-41915827 MsaT031997.1:CDS
ATACAGGCAGAAGAACAAGG+TGG 0.746845 6:-41915953 MsaT031997.1:CDS
TATTCTTCCTCATCTCGACG+CGG 0.761362 6:+41915778 None:intergenic
TGATGACGGTGATGATGACG+AGG 0.768255 6:-41915746 MsaT031997.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr6 gene 41915684 41918706 41915684 ID=MsaG031997
Chr6 mRNA 41915684 41918706 41915684 ID=MsaT031997.1;Parent=MsaG031997
Chr6 exon 41915684 41917403 41915684 ID=MsaT031997.1.exon2;Parent=MsaT031997.1
Chr6 CDS 41915684 41917403 41915684 ID=cds.MsaT031997.1;Parent=MsaT031997.1
Chr6 exon 41918438 41918706 41918438 ID=MsaT031997.1.exon1;Parent=MsaT031997.1
Chr6 CDS 41918438 41918706 41918438 ID=cds.MsaT031997.1;Parent=MsaT031997.1
Gene Sequence

>MsaT031997.1

ATGCTAGGGGACTCAACAGTGTTGGGAACAGGAGGAGGCAGCTCAGGAGATGGAGCAGGAGCTTACCATGATGGTGGTGGTGGATCAATTTCAGGTGATGATGAAAGAGGGGGTGGAAGTAGTAGAAATGAAGAGGGTGTGGATAGAAGTTTTGGTGGTAATAGATGGCCAAGACAAGAAACAGTTGCTTTGTTGAAGATAAGGTCTGATATGGATGTTGCTTTTAAAGATGCAAGTGTTAAAGGTCCCTTATGGGATGAAGTTTCAAGGAAAATGGCAGATCTTGGGTATCAAAGAAACTCCAAAAAATGCAAAGAAAAGTTTGAGAATGTTTACAAATATCACAAGAGAACCAAAGAAGGAAGAGGTGGTAAATCAGATGGTAAAACTTATAGATTCTTTGATCAATTACAAGCCCTTGAAAACAACCCTTCAATGCATCAATCACCTTCAATAACACCACCACCACCACAAACTCAAACACAAACTCCCATTAGTACTATTCCCACCCCTACAACAACAGCTTCATTTCTATCTGCACCTCCATTGTTAAACTCTACACCTCCTACCACCACTGTTCCATCAACTACACTTCCAATTCCAATGTCTTACACACAATCCAACCCTACACACTTTCCACCAATACCATCATCAACAACAACAACAAACCCTACAAATACTAATAACCCTCTTCCTCAAATTACTATTACACCCCCACCATCTTCATTCGCTAATATTTCAGCGGATTTCTTCTCGAATTCAAGTTCGTCTTCGACTTCTTCGGAGGAAACGACAACAATGGAAGGGGGATCGAATCGACGGAAGAGGAAGAGGAAATGGAAGGATTTCTTTGAGAGACTAATGAAGGAGGTTGTTGAGAAACAAGAGGAGTTGCACAAGAGGTTCTTGGAAGCTATAGAGAAAAGAGAAAGAGAGAGAGGTGCTAGAGAAGAAGCTTGGAGGTTGCAAGAGATGCAAAGGATTAATAGAGAAAGGGAAATTCTTGCTCAAGAGAGATCTATTGCTGCTACTAAAGATGCTGCTGTTATGGCTTTTTTGCAGAAGATTGCTGAACAACAAAATCTTGTTCCTCCTGTATTGAACAACAACACCGTCATTCCTCAACAACAACAAGCGCCGCAGGAAACTACACCAACCCCAACACCAACACCGACACCGACACCAGCAGCAGCACCATTGCCAGTACCAGCAGTACCATTGCCAATACCAATACCAGCAATACCTACACCGCAACAAGTTCAAACTCCAACTGTAACAGTGCAACAACAAACAGCACCGGTCATTCCTCAGGCTTCGCCGTTGCCACAACATCAGCAGCAGCAACAACAGGTTCAGGTACAACAGCAGCAAGTGACGAATATGGAAGTTGCGAAAAGTGACAACAATGGTGAGAGTATGATGCATGCAAGTTCATCTAGGTGGCCAAAAACTGAGGTTGAGGCATTGATAAAGCTGAGAACAACTCTTGATATGAAGTACCAAGAAAATGGACCTAAAGGGCCATTATGGGAGGAGATTTCAGGTTTGATGAAGAAAATGGGGTACAATAGGAATGCAAAGAGGTGCAAAGAGAAATGGGAGAACATCAACAAGTATTTCAAGAAAGTGAAGGAAAGCAACAAGAAGAGGCCAGAAGATTCAAAGACATGTCCTTACTTTCACCAACTTGATGCTCTATACAGGCAGAAGAACAAGGTGGAGGGTGCAGCTGCTGCGTCGAGGCCTGAGGGAACGATGATGGCACCGTTGATGGTTCAGCCGGAGCAGCAATGGCCTCCACAACAACAGGCGCCACCAGCAGCCAGGGCGGATGTGACCATGGAGGATGCTGAGAATGCTGAGAATGATCGGCCGCGTCGAGATGAGGAAGAATATTATGACGATGATGACGGTGATGATGACGAGGACGAAGATGAAGGTAGTGACAATTATGAAGTGGTTGCCAACAAACCACCACCACCTCAATAA

Protein sequence

>MsaT031997.1

MLGDSTVLGTGGGSSGDGAGAYHDGGGGSISGDDERGGGSSRNEEGVDRSFGGNRWPRQETVALLKIRSDMDVAFKDASVKGPLWDEVSRKMADLGYQRNSKKCKEKFENVYKYHKRTKEGRGGKSDGKTYRFFDQLQALENNPSMHQSPSITPPPPQTQTQTPISTIPTPTTTASFLSAPPLLNSTPPTTTVPSTTLPIPMSYTQSNPTHFPPIPSSTTTTNPTNTNNPLPQITITPPPSSFANISADFFSNSSSSSTSSEETTTMEGGSNRRKRKRKWKDFFERLMKEVVEKQEELHKRFLEAIEKRERERGAREEAWRLQEMQRINREREILAQERSIAATKDAAVMAFLQKIAEQQNLVPPVLNNNTVIPQQQQAPQETTPTPTPTPTPTPAAAPLPVPAVPLPIPIPAIPTPQQVQTPTVTVQQQTAPVIPQASPLPQHQQQQQQVQVQQQQVTNMEVAKSDNNGESMMHASSSRWPKTEVEALIKLRTTLDMKYQENGPKGPLWEEISGLMKKMGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYRQKNKVEGAAAASRPEGTMMAPLMVQPEQQWPPQQQAPPAARADVTMEDAENAENDRPRRDEEEYYDDDDGDDDEDEDEGSDNYEVVANKPPPPQ*