AlfalfaGEDB | MsaG031998

M. sativa ssp. caerulea / MsaG031998

KEGG: -
GO: -
PFAM: PF13837.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031998	XP_024641615.1	94.900	451	20	1	1	451	1	448	0.0	746

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031998	tr\|A0A396HJE3\|A0A396HJE3_MEDTR	94.900	451	20	1	1	451	1	448	0.0	746

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TFs/TRs:

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Gene ID	Type	Classification
MsaG031998	TF	Trihelix

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031998	MtrunA17_Chr6g0463911	94.900	451	20	1	1	451	1	448	0.0	746
MsaG031998	MtrunA17_Chr1g0201951	71.562	429	109	6	24	445	23	445	0.0	592
MsaG031998	MtrunA17_Chr2g0328901	41.928	415	209	6	37	444	22	411	7.73e-92	285
MsaG031998	MtrunA17_Chr7g0265561	50.000	244	101	6	11	248	1	229	2.24e-66	219
MsaG031998	MtrunA17_Chr1g0179561	62.420	157	56	3	93	248	95	249	4.41e-58	198
MsaG031998	MtrunA17_Chr1g0179561	48.000	75	39	0	371	445	406	480	1.17e-17	85.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG031998	AT1G21200.1	61.707	457	147	10	1	446	1	440	6.28e-178	505
MsaG031998	AT1G21200.2	61.707	457	147	10	1	446	1	440	6.28e-178	505
MsaG031998	AT1G76870.2	52.283	438	145	15	17	447	3	383	1.64e-125	370
MsaG031998	AT1G76870.1	52.283	438	145	15	17	447	3	383	1.64e-125	370
MsaG031998	AT1G76870.3	52.283	438	145	15	17	447	3	383	1.64e-125	370
MsaG031998	AT3G10040.1	54.598	174	64	3	94	252	73	246	6.19e-46	165

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Find 112 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACTAAGACAAGGCCA+AGG	0.689910	6:-41963763	MsaT031998.1:CDS
AAAAGGCTTAACGATATGCT+TGG	0.506945	6:-41964153	MsaT031998.1:CDS
AAACAAACACTCGGGGAGTG+AGG	0.580768	6:-41964472	MsaT031998.1:CDS
AACTCATCCGTGTCAAGGGC+CGG	0.484357	6:-41964595	MsaT031998.1:CDS
AAGCTTGATTTCCATCTGGT+TGG	0.498671	6:+41963659	None:intergenic
AATGCAATCTATTACAATTA+TGG	0.268261	6:+41963995	None:intergenic
AATTCAACGATCTTAATAAA+AGG	0.306147	6:-41964179	MsaT031998.1:CDS
AATTTATCCTCACATTGCTG+AGG	0.616974	6:+41964198	None:intergenic
ACAGATTCAGGTTGAGATGA+TGG	0.487352	6:-41963557	MsaT031998.1:CDS
ACTACGAAAAGACTAAGACA+AGG	0.735602	6:-41963769	MsaT031998.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	41963399	41964754	41963399	ID=MsaG031998
Chr6	mRNA	41963399	41964754	41963399	ID=MsaT031998.1;Parent=MsaG031998
Chr6	exon	41963399	41964754	41963399	ID=MsaT031998.1.exon1;Parent=MsaT031998.1
Chr6	CDS	41963399	41964754	41963399	ID=cds.MsaT031998.1;Parent=MsaT031998.1

Gene Sequence

>MsaT031998.1

ATGGAAGGGAATTTGTCTCAAGGAGGTATAGTTCAAGGTGATGGTGGTGGTGGTGGTTCTTTTGGTGGTTTTGATTTGCCGGGATCGATGCGAGTTCATCGTCAAGGGCAGAATCCGCATACGATGAACCAACATCAAACTCATCCGTGTCAAGGGCCGGCGGTGCTTTCTTCGATTAATGAAGGTTTTCCTCTTACAATAGGGACGTTGAAGAACTGTGATCAGACGATGTCGATGAACGAGTTTAGTCAGGGAGAAAGAAACAAACACTCGGGGAGTGAGGAAGATGAGCCGGAGGAAGGTGGTGATGGTCATCATCAAGAAGGAAGTAGAGGGAAAAAGGGGTCGCCTTGGCAGCGTGTGAAGTGGACTGATAAGATGGTGAGGCTTTTGATAACGGCGGTGTCTTATATTGGCGAGGACGGGAGTTCTGAAGGTGGTAGTGGTGGAAGGAAAAAATTTGCAGTGTTGCAGAAAAAGGGTAAGTGGAAATCTATATCTAAGGTTATGGCTGAAAGAGGTTATCGTGTTTCGCCTCAGCAATGTGAGGATAAATTCAACGATCTTAATAAAAGGTATAAAAGGCTTAACGATATGCTTGGAAGGGGAACCTCCTGTCAAGTTGTTGAAAATCCGGCTTTGTTGGATGTAATCGAATATCTTAACGAGAAAGAAAAGGATGATGTTAGAAAAATATTGAACTCGAAACATCTCTTCTATGAAGAGATGTGTTCTTACCATAATTGTAATAGATTGCATTTGCCGCACGATCCTGCATTGCAACGGTCCTTACAAATAGCTCTCCGAAATAGAGATGATCATGATAACGATGATGTGAGAAGGTCCTATCATGATGATCATGACGAGGATGATCATGATATGGAAACGGACGATCATGATGAGTTCGAAGACAACTATGCTTCCCATGGTGATAGTCGTGGAATCTTTGGGGGATTGGCGGGAACTACGAAAAGACTAAGACAAGGCCAAGGCCATGAAGATGCTACTACTTTTGGGAATTCTTTAAATTGTCAGGAGTACCATAAAAGTTCATATCCTCATGGACAGATGGTCCAACCAGATGGAAATCAAGCTTTACCGGAAAACATGAAAGCAGCTTGGTTACAGAAGCAATGGGTTGAATCTCGCTCAGTTCAGTTAGAAGAACAGAAGCTACAGATTCAGGTTGAGATGATGGAACTAAAGAAACAAAAATTCAAGTGGGAGAGGTTTAGCAAGAAAAAAGACCGAGAGTTGGAGAAGTTCAAGCTGGAGAACGACAGAATGAAGATTGAGAATGAACGTATTGCTTTAGAACTAAAGCGAAAGGAGATCGGCGGCACCAGCTTTAACTAG

Protein sequence

>MsaT031998.1

MEGNLSQGGIVQGDGGGGGSFGGFDLPGSMRVHRQGQNPHTMNQHQTHPCQGPAVLSSINEGFPLTIGTLKNCDQTMSMNEFSQGERNKHSGSEEDEPEEGGDGHHQEGSRGKKGSPWQRVKWTDKMVRLLITAVSYIGEDGSSEGGSGGRKKFAVLQKKGKWKSISKVMAERGYRVSPQQCEDKFNDLNKRYKRLNDMLGRGTSCQVVENPALLDVIEYLNEKEKDDVRKILNSKHLFYEEMCSYHNCNRLHLPHDPALQRSLQIALRNRDDHDNDDVRRSYHDDHDEDDHDMETDDHDEFEDNYASHGDSRGIFGGLAGTTKRLRQGQGHEDATTFGNSLNCQEYHKSSYPHGQMVQPDGNQALPENMKAAWLQKQWVESRSVQLEEQKLQIQVEMMELKKQKFKWERFSKKKDRELEKFKLENDRMKIENERIALELKRKEIGGTSFN*