Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG031999 | XP_013451828.1 | 98.230 | 339 | 6 | 0 | 1 | 339 | 1 | 339 | 0.0 | 695 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG031999 | sp|P46276|F16P2_SOLTU | 87.611 | 339 | 42 | 0 | 1 | 339 | 1 | 339 | 0.0 | 630 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG031999 | tr|G8A0S6|G8A0S6_MEDTR | 98.230 | 339 | 6 | 0 | 1 | 339 | 1 | 339 | 0.0 | 695 |
Gene ID | Type | Classification |
---|---|---|
MsaG031999 | TF | C3H |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG000163 | MsaG031999 | 0.822139 | 4.893584e-53 | 1.139104e-50 |
MsaG000671 | MsaG031999 | 0.802949 | 7.401781e-49 | 1.070086e-46 |
MsaG002871 | MsaG031999 | 0.816544 | 9.092902e-52 | 1.828013e-49 |
MsaG003778 | MsaG031999 | 0.815609 | 1.466959e-51 | 2.879893e-49 |
MsaG004029 | MsaG031999 | 0.810871 | 1.591698e-50 | 2.776455e-48 |
MsaG004030 | MsaG031999 | 0.820395 | 1.229879e-52 | 2.733458e-50 |
MsaG004303 | MsaG031999 | 0.801341 | 1.579582e-48 | 2.201370e-46 |
MsaG004759 | MsaG031999 | 0.803811 | 4.915205e-49 | 7.249093e-47 |
MsaG004912 | MsaG031999 | 0.802536 | 8.997106e-49 | 1.288518e-46 |
MsaG004987 | MsaG031999 | 0.808942 | 4.121501e-50 | 6.861087e-48 |
MsaG005573 | MsaG031999 | 0.829302 | 9.964267e-55 | 2.826493e-52 |
MsaG005843 | MsaG031999 | 0.830624 | 4.760495e-55 | 1.402458e-52 |
MsaG005995 | MsaG031999 | 0.818083 | 4.110854e-52 | 8.598621e-50 |
MsaG006085 | MsaG031999 | 0.816370 | 9.940832e-52 | 1.989648e-49 |
MsaG006240 | MsaG031999 | 0.821802 | 5.852965e-53 | 1.350142e-50 |
MsaG006638 | MsaG031999 | 0.830655 | 4.679296e-55 | 1.379736e-52 |
MsaG006833 | MsaG031999 | 0.806302 | 1.489035e-49 | 2.327457e-47 |
MsaG006934 | MsaG031999 | 0.802852 | 7.749959e-49 | 1.117891e-46 |
MsaG007213 | MsaG031999 | 0.808186 | 5.964468e-50 | 9.749965e-48 |
MsaG007312 | MsaG031999 | 0.818787 | 2.852247e-52 | 6.075946e-50 |
MsaG008052 | MsaG031999 | 0.812190 | 8.252855e-51 | 1.486951e-48 |
MsaG008357 | MsaG031999 | 0.805146 | 2.597393e-49 | 3.951245e-47 |
MsaG008428 | MsaG031999 | 0.809434 | 3.236401e-50 | 5.451949e-48 |
MsaG009351 | MsaG031999 | 0.802117 | 1.096419e-48 | 1.555162e-46 |
MsaG009738 | MsaG031999 | 0.828438 | 1.609178e-54 | 4.455132e-52 |
MsaG010637 | MsaG031999 | 0.811807 | 9.992043e-51 | 1.783470e-48 |
MsaG010890 | MsaG031999 | 0.833786 | 7.924821e-56 | 2.560152e-53 |
MsaG011144 | MsaG031999 | 0.801780 | 1.285123e-48 | 1.808903e-46 |
MsaG012609 | MsaG031999 | 0.808139 | 6.103690e-50 | 9.966168e-48 |
MsaG016243 | MsaG031999 | 0.811489 | 1.170842e-50 | 2.073529e-48 |
MsaG016512 | MsaG031999 | 0.818938 | 2.636946e-52 | 5.639728e-50 |
MsaG016536 | MsaG031999 | 0.804850 | 2.993782e-49 | 4.523001e-47 |
MsaG017683 | MsaG031999 | 0.817153 | 6.646917e-52 | 1.357458e-49 |
MsaG017733 | MsaG031999 | 0.809013 | 3.980083e-50 | 6.636949e-48 |
MsaG018524 | MsaG031999 | 0.821163 | 8.206888e-53 | 1.861473e-50 |
MsaG018781 | MsaG031999 | 0.809837 | 2.653998e-50 | 4.514583e-48 |
MsaG019395 | MsaG031999 | 0.833592 | 8.859954e-56 | 2.845993e-53 |
MsaG020149 | MsaG031999 | 0.824277 | 1.558728e-53 | 3.844403e-51 |
MsaG020532 | MsaG031999 | 0.814546 | 2.520053e-51 | 4.815880e-49 |
MsaG021290 | MsaG031999 | 0.800301 | 2.569062e-48 | 3.497117e-46 |
MsaG021395 | MsaG031999 | 0.804527 | 3.492925e-49 | 5.237687e-47 |
MsaG023698 | MsaG031999 | 0.829559 | 8.636992e-55 | 2.468272e-52 |
MsaG024139 | MsaG031999 | 0.821006 | 8.916660e-53 | 2.014062e-50 |
MsaG024225 | MsaG031999 | 0.823675 | 2.155476e-53 | 5.230097e-51 |
MsaG025882 | MsaG031999 | 0.807541 | 8.167739e-50 | 1.314607e-47 |
MsaG027060 | MsaG031999 | 0.802753 | 8.119162e-49 | 1.168536e-46 |
MsaG027861 | MsaG031999 | 0.823683 | 2.145159e-53 | 5.206342e-51 |
MsaG028038 | MsaG031999 | 0.805343 | 2.363386e-49 | 3.611687e-47 |
MsaG028251 | MsaG031999 | 0.824180 | 1.642380e-53 | 4.039943e-51 |
MsaG028738 | MsaG031999 | 0.812389 | 7.468586e-51 | 1.352362e-48 |
MsaG028649 | MsaG031999 | 0.815989 | 1.208257e-51 | 2.394914e-49 |
MsaG028834 | MsaG031999 | 0.819232 | 2.261685e-52 | 4.874613e-50 |
MsaG029389 | MsaG031999 | 0.805275 | 2.441099e-49 | 3.724531e-47 |
MsaG029464 | MsaG031999 | 0.802974 | 7.314541e-49 | 1.058084e-46 |
MsaG029577 | MsaG031999 | 0.813506 | 4.262883e-51 | 7.936877e-49 |
MsaG029839 | MsaG031999 | 0.865498 | 1.131414e-64 | 1.090408e-61 |
MsaG031007 | MsaG031999 | 0.823199 | 2.781227e-53 | 6.661668e-51 |
MsaG031996 | MsaG031999 | 0.867969 | 1.866664e-65 | 1.988399e-62 |
MsaG031997 | MsaG031999 | 0.815498 | 1.552379e-51 | 3.038913e-49 |
MsaG031999 | MsaG032176 | 0.810127 | 2.299745e-50 | 3.939434e-48 |
MsaG031999 | MsaG032970 | 0.810651 | 1.774866e-50 | 3.079471e-48 |
MsaG031999 | MsaG034249 | 0.833779 | 7.956808e-56 | 2.569954e-53 |
MsaG031999 | MsaG034749 | 0.825714 | 7.164932e-54 | 1.838260e-51 |
MsaG031999 | MsaG040027 | 0.805162 | 2.577380e-49 | 3.922265e-47 |
MsaG031999 | MsaG040264 | 0.805768 | 1.925948e-49 | 2.972554e-47 |
MsaG031999 | MsaG040358 | 0.840643 | 1.422049e-57 | 5.664584e-55 |
MsaG031999 | MsaG040720 | 0.801094 | 1.773466e-48 | 2.457735e-46 |
MsaG031999 | MsaG041072 | 0.809616 | 2.959299e-50 | 5.007047e-48 |
MsaG031999 | MsaG041299 | 0.816163 | 1.105297e-51 | 2.200613e-49 |
MsaG031999 | MsaG042087 | 0.815204 | 1.803973e-51 | 3.505273e-49 |
MsaG031999 | MsaG042511 | 0.810680 | 1.749544e-50 | 3.037607e-48 |
MsaG031999 | MsaG042686 | 0.810605 | 1.815723e-50 | 3.146796e-48 |
MsaG031999 | MsaG042795 | 0.806976 | 1.074916e-49 | 1.706992e-47 |
MsaG031999 | MsaG043226 | 0.802246 | 1.031705e-48 | 1.467701e-46 |
MsaG031999 | MsaG043809 | 0.802620 | 8.645666e-49 | 1.240566e-46 |
MsaG031999 | MsaG043879 | 0.816544 | 9.093128e-52 | 1.828054e-49 |
MsaG031999 | MsaG044049 | 0.804631 | 3.323661e-49 | 4.995826e-47 |
MsaG031999 | MsaG044546 | 0.827785 | 2.306602e-54 | 6.269881e-52 |
MsaG031999 | MsaG045510 | 0.803870 | 4.779617e-49 | 7.058693e-47 |
MsaG031999 | MsaG045593 | 0.813756 | 3.757200e-51 | 7.039548e-49 |
MsaG031999 | MsaG045721 | 0.809455 | 3.203251e-50 | 5.398948e-48 |
MsaG031999 | MsaG046018 | 0.828242 | 1.793552e-54 | 4.938024e-52 |
MsaG031999 | MsaG046357 | 0.800252 | 2.628656e-48 | 3.574327e-46 |
MsaG031999 | MsaG046534 | 0.824986 | 1.063049e-53 | 2.673138e-51 |
MsaG031999 | MsaG046536 | 0.835973 | 2.243874e-56 | 7.738311e-54 |
MsaG031999 | MsaG046442 | 0.828351 | 1.687897e-54 | 4.661671e-52 |
MsaG031999 | MsaG046868 | 0.820351 | 1.259122e-52 | 2.795204e-50 |
MsaG031999 | MsaG046981 | 0.808439 | 5.271081e-50 | 8.669106e-48 |
MsaG031999 | MsaG047022 | 0.808536 | 5.028402e-50 | 8.289286e-48 |
MsaG031999 | MsaG002078 | 0.807624 | 7.845852e-50 | 1.265291e-47 |
MsaG031999 | MsaG002578 | 0.807703 | 7.547710e-50 | 1.219583e-47 |
MsaG031999 | MsaG002582 | 0.808985 | 4.035338e-50 | 6.724596e-48 |
MsaG031999 | MsaG008762 | 0.806494 | 1.357369e-49 | 2.131276e-47 |
MsaG031999 | MsaG008743 | 0.816036 | 1.179223e-51 | 2.340174e-49 |
MsaG031999 | MsaG008702 | 0.814708 | 2.320929e-51 | 4.453544e-49 |
MsaG031999 | MsaG012667 | 0.815169 | 1.835929e-51 | 3.564160e-49 |
MsaG031999 | MsaG013042 | 0.800948 | 1.898657e-48 | 2.622622e-46 |
MsaG031999 | MsaG019851 | 0.827536 | 2.646577e-54 | 7.143753e-52 |
MsaG031999 | MsaG018216 | 0.802601 | 8.723985e-49 | 1.251266e-46 |
MsaG031999 | MsaG020114 | 0.807318 | 9.105291e-50 | 1.457697e-47 |
MsaG031999 | MsaG018567 | 0.801018 | 1.837206e-48 | 2.541757e-46 |
MsaG031999 | MsaG027456 | 0.838277 | 5.815597e-57 | 2.151301e-54 |
MsaG031999 | MsaG026953 | 0.829438 | 9.235342e-55 | 2.630139e-52 |
MsaG031999 | MsaG033426 | 0.804432 | 3.655788e-49 | 5.469827e-47 |
MsaG031999 | MsaG032991 | 0.808488 | 5.147423e-50 | 8.475695e-48 |
MsaG031999 | MsaG034688 | 0.808130 | 6.130388e-50 | 1.000768e-47 |
MsaG031999 | MsaG030433 | 0.815297 | 1.720300e-51 | 3.350572e-49 |
MsaG031999 | MsaG036962 | 0.842508 | 4.609156e-58 | 1.948334e-55 |
MsaG031999 | MsaG036960 | 0.803189 | 6.605502e-49 | 9.603084e-47 |
MsaG031999 | MsaG043087 | 0.806570 | 1.308091e-49 | 2.057636e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG031999 | MtrunA17_Chr6g0463901 | 98.230 | 339 | 6 | 0 | 1 | 339 | 1 | 339 | 0.0 | 695 |
MsaG031999 | MtrunA17_Chr2g0278581 | 84.179 | 335 | 53 | 0 | 1 | 335 | 1 | 335 | 0.0 | 596 |
MsaG031999 | MtrunA17_Chr7g0241071 | 50.000 | 342 | 153 | 2 | 11 | 335 | 71 | 411 | 4.73e-114 | 337 |
MsaG031999 | MtrunA17_Chr4g0049821 | 40.836 | 311 | 161 | 6 | 32 | 332 | 87 | 384 | 4.63e-73 | 231 |
MsaG031999 | MtrunA17_Chr3g0113101 | 28.996 | 269 | 163 | 8 | 67 | 327 | 116 | 364 | 1.46e-19 | 88.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG031999 | AT1G43670.1 | 85.251 | 339 | 50 | 0 | 1 | 339 | 1 | 339 | 0.0 | 613 |
MsaG031999 | AT3G54050.2 | 50.292 | 342 | 150 | 3 | 11 | 335 | 79 | 417 | 1.50e-114 | 338 |
MsaG031999 | AT3G54050.1 | 50.292 | 342 | 150 | 3 | 11 | 335 | 79 | 417 | 1.50e-114 | 338 |
MsaG031999 | AT5G64380.1 | 40.836 | 311 | 165 | 7 | 32 | 332 | 89 | 390 | 3.52e-74 | 234 |
MsaG031999 | AT3G55800.1 | 30.037 | 273 | 155 | 9 | 67 | 327 | 123 | 371 | 2.81e-20 | 91.3 |
Find 83 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCATAGCTACCAAGAAATA+TGG | 0.228525 | 6:+41967908 | None:intergenic |
ACCACTGGAAGTGGTGTTAA+TGG | 0.234751 | 6:-41971013 | MsaT031999.1:CDS |
GAATAAATCTTGCCTTTCTT+TGG | 0.239412 | 6:+41970227 | None:intergenic |
TTGCTGAATAACATTGTTCT+TGG | 0.264261 | 6:-41974119 | MsaT031999.1:CDS |
CCTAACTCACCCTGACATTA+AGG | 0.279021 | 6:-41970957 | MsaT031999.1:intron |
GAAAGATCTCCCATATTTCT+TGG | 0.282491 | 6:-41967918 | MsaT031999.1:CDS |
GCAAAGCTCATTGGACTTGC+AGG | 0.289654 | 6:-41972756 | MsaT031999.1:CDS |
CTTCCCAATGTCCTTCTTGA+TGG | 0.290934 | 6:-41968906 | MsaT031999.1:CDS |
CCTTAATGTCAGGGTGAGTT+AGG | 0.309718 | 6:+41970957 | None:intergenic |
GTAAAATCTCCACGTGATTC+AGG | 0.312460 | 6:+41974146 | None:intergenic |
ATGCATTACCCTTTCCTTGC+CGG | 0.313636 | 6:+41968859 | None:intergenic |
GCAAAGTCTCTAAGATATAT+TGG | 0.314481 | 6:-41970034 | MsaT031999.1:CDS |
AATAAATCTTGCCTTTCTTT+GGG | 0.339648 | 6:+41970228 | None:intergenic |
ATTCAACACAAAACGTGTTA+TGG | 0.348871 | 6:+41974184 | None:intergenic |
GTTCATCGTACATTGCTATA+TGG | 0.377460 | 6:-41969095 | MsaT031999.1:CDS |
TTCACCCTTGACCCTTCTCT+TGG | 0.378219 | 6:-41970989 | MsaT031999.1:CDS |
AAAGAAAGGCAAGATTTATT+CGG | 0.384048 | 6:-41970225 | MsaT031999.1:CDS |
CAGAATATTACCTTAATGTC+AGG | 0.386263 | 6:+41970947 | None:intergenic |
ATGAAGGGAACGCCAAGAAC+TGG | 0.409253 | 6:-41970199 | MsaT031999.1:CDS |
TGCAGGAGAGACCAATGTTC+AGG | 0.427688 | 6:-41972739 | MsaT031999.1:intron |
AGCTTTGCAGAACACCTCAT+TGG | 0.427984 | 6:+41972128 | None:intergenic |
CATCATCTATGATTGGTTCA+TGG | 0.429120 | 6:+41971224 | None:intergenic |
TGCAGAACATCATCTATGAT+TGG | 0.429779 | 6:+41971217 | None:intergenic |
ATGTTGGAAGAGCCGTCTAA+TGG | 0.435353 | 6:+41971600 | None:intergenic |
AGTAGGACCATCCCAGTTCT+TGG | 0.436119 | 6:+41970187 | None:intergenic |
AAGATTTATTCGGTGAATGA+AGG | 0.437587 | 6:-41970215 | MsaT031999.1:CDS |
TTTGTCAGCAGGGTACAAAA+AGG | 0.440471 | 6:+41969067 | None:intergenic |
ATCGATTGTGGTGTTTCCAT+TGG | 0.440634 | 6:-41971579 | MsaT031999.1:CDS |
GCTGGTCTTGCAAAGCTCAT+TGG | 0.453630 | 6:-41972765 | MsaT031999.1:CDS |
AATGTCCTTCTTGATGGAAC+AGG | 0.459315 | 6:-41968900 | MsaT031999.1:CDS |
GGCTTTCACCGGCAAGGAAA+GGG | 0.474657 | 6:-41968867 | MsaT031999.1:intron |
ATATATCTTAGAGACTTTGC+TGG | 0.483827 | 6:+41970037 | None:intergenic |
TCATAGCTACCAAGAAATAT+GGG | 0.491600 | 6:+41967909 | None:intergenic |
GCTGCCAACATGTTCTTCCC+TGG | 0.493174 | 6:+41971193 | None:intergenic |
AGATGAGGATGCAATATTTG+TGG | 0.495684 | 6:-41971981 | MsaT031999.1:CDS |
AACAATGTTATTCAGCAAGA+TGG | 0.502314 | 6:+41974124 | None:intergenic |
GTTCCATCAAGAAGGACATT+GGG | 0.503823 | 6:+41968903 | None:intergenic |
GATGGAACAGGCAGGAGGAC+AGG | 0.504743 | 6:-41968888 | MsaT031999.1:CDS |
AGGCTTTCACCGGCAAGGAA+AGG | 0.509795 | 6:-41968868 | MsaT031999.1:CDS |
GCAGCTGGTTATTGCATGTA+CGG | 0.516581 | 6:-41971175 | MsaT031999.1:CDS |
AGGATAAACTCGCCAAGAGA+AGG | 0.516852 | 6:+41970977 | None:intergenic |
AACAACTTTCCACGCTGCTT+AGG | 0.518664 | 6:+41971956 | None:intergenic |
TAGATGATGTTCTGCAACCA+GGG | 0.531413 | 6:-41971210 | MsaT031999.1:CDS |
GGGAAGAACATGTTGGCAGC+TGG | 0.533032 | 6:-41971190 | MsaT031999.1:CDS |
TCTTTGCAGATCCCAAAGAA+AGG | 0.537179 | 6:-41970239 | MsaT031999.1:intron |
TGTTCCATCAAGAAGGACAT+TGG | 0.542151 | 6:+41968902 | None:intergenic |
GGGAACACTTACCTGAACAT+TGG | 0.543127 | 6:+41972728 | None:intergenic |
ATAGATGATGTTCTGCAACC+AGG | 0.548458 | 6:-41971211 | MsaT031999.1:CDS |
GCAGGAGGACAGGCTTTCAC+CGG | 0.548518 | 6:-41968878 | MsaT031999.1:CDS |
AGATTTATTCGGTGAATGAA+GGG | 0.550932 | 6:-41970214 | MsaT031999.1:CDS |
TTGCAGTTTGTGATAACCAC+TGG | 0.553944 | 6:-41971028 | MsaT031999.1:intron |
TCCTGCCTGTTCCATCAAGA+AGG | 0.554789 | 6:+41968895 | None:intergenic |
GGAAACACCACAATCGATGT+TGG | 0.558592 | 6:+41971584 | None:intergenic |
TGAAGGGAACGCCAAGAACT+GGG | 0.558723 | 6:-41970198 | MsaT031999.1:CDS |
TAGGGATCATACAGTTCCAA+TGG | 0.562520 | 6:+41971563 | None:intergenic |
CAAAGCTCTTTATGCTGCAG+AGG | 0.565129 | 6:-41967871 | MsaT031999.1:CDS |
TTTGCTGGTGAACCATCTGT+TGG | 0.566108 | 6:+41970052 | None:intergenic |
CTTGGTTTCTGAAGAAGATG+AGG | 0.575814 | 6:-41971996 | MsaT031999.1:CDS |
AGAATATTACCTTAATGTCA+GGG | 0.576590 | 6:+41970948 | None:intergenic |
ATTCATACGTACGCGGCAGT+AGG | 0.578888 | 6:+41970170 | None:intergenic |
TGCAAAGCTTTGATAAGCAG+TGG | 0.580054 | 6:-41972114 | MsaT031999.1:CDS |
GGCTCTTCCAACATCGATTG+TGG | 0.580554 | 6:-41971591 | MsaT031999.1:CDS |
ACTCGCCAAGAGAAGGGTCA+AGG | 0.584729 | 6:+41970984 | None:intergenic |
ACCATTAACACCACTTCCAG+TGG | 0.586134 | 6:+41971012 | None:intergenic |
GGATAAACTCGCCAAGAGAA+GGG | 0.588099 | 6:+41970978 | None:intergenic |
AGTCTCTAAGATATATTGGA+AGG | 0.589845 | 6:-41970030 | MsaT031999.1:intron |
TCCTTCTTGATGGAACAGGC+AGG | 0.593282 | 6:-41968896 | MsaT031999.1:CDS |
CATGTACGGAAGCTCTTGCA+CGG | 0.593772 | 6:-41971161 | MsaT031999.1:intron |
AAATGCAAGTATCCAACAGA+TGG | 0.594501 | 6:-41970064 | MsaT031999.1:CDS |
GCTTGATGTTCTTTCCAATG+AGG | 0.597378 | 6:-41972142 | MsaT031999.1:CDS |
CTCGCCAAGAGAAGGGTCAA+GGG | 0.597914 | 6:+41970985 | None:intergenic |
TTTGTGATAACCACTGGAAG+TGG | 0.598951 | 6:-41971022 | MsaT031999.1:CDS |
TGTTTGTTCTGCTGTTAACA+AGG | 0.601443 | 6:-41974087 | MsaT031999.1:intron |
AGAGTCCAAATGGAAAACTT+CGG | 0.610193 | 6:-41969043 | MsaT031999.1:intron |
AGGACAGGCTTTCACCGGCA+AGG | 0.624102 | 6:-41968873 | MsaT031999.1:CDS |
GGGAACGCCAAGAACTGGGA+TGG | 0.631401 | 6:-41970194 | MsaT031999.1:CDS |
TACGATGTGCATCTGCGCTG+TGG | 0.637166 | 6:+41974219 | None:intergenic |
CATCGTACATTGCTATATGG+AGG | 0.654004 | 6:-41969092 | MsaT031999.1:CDS |
GCAACCAGGGAAGAACATGT+TGG | 0.656103 | 6:-41971197 | MsaT031999.1:CDS |
TGGTAGCTATGATGATATCG+AGG | 0.676941 | 6:-41967898 | MsaT031999.1:CDS |
TTCTTGATGGAACAGGCAGG+AGG | 0.688021 | 6:-41968893 | MsaT031999.1:CDS |
TCTAAGCATCCTGAATCACG+TGG | 0.704682 | 6:-41974155 | MsaT031999.1:CDS |
TTTGTGGATCCTAAGCAGCG+TGG | 0.736390 | 6:-41971965 | MsaT031999.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr6 | gene | 41967863 | 41974246 | 41967863 | ID=MsaG031999 |
Chr6 | mRNA | 41967863 | 41974246 | 41967863 | ID=MsaT031999.1;Parent=MsaG031999 |
Chr6 | exon | 41967863 | 41967970 | 41967863 | ID=MsaT031999.1.exon12;Parent=MsaT031999.1 |
Chr6 | CDS | 41967863 | 41967970 | 41967863 | ID=cds.MsaT031999.1;Parent=MsaT031999.1 |
Chr6 | exon | 41968868 | 41968943 | 41968868 | ID=MsaT031999.1.exon11;Parent=MsaT031999.1 |
Chr6 | CDS | 41968868 | 41968943 | 41968868 | ID=cds.MsaT031999.1;Parent=MsaT031999.1 |
Chr6 | exon | 41969044 | 41969130 | 41969044 | ID=MsaT031999.1.exon10;Parent=MsaT031999.1 |
Chr6 | CDS | 41969044 | 41969130 | 41969044 | ID=cds.MsaT031999.1;Parent=MsaT031999.1 |
Chr6 | exon | 41970031 | 41970096 | 41970031 | ID=MsaT031999.1.exon9;Parent=MsaT031999.1 |
Chr6 | CDS | 41970031 | 41970096 | 41970031 | ID=cds.MsaT031999.1;Parent=MsaT031999.1 |
Chr6 | exon | 41970182 | 41970252 | 41970182 | ID=MsaT031999.1.exon8;Parent=MsaT031999.1 |
Chr6 | CDS | 41970182 | 41970252 | 41970182 | ID=cds.MsaT031999.1;Parent=MsaT031999.1 |
Chr6 | exon | 41970958 | 41971044 | 41970958 | ID=MsaT031999.1.exon7;Parent=MsaT031999.1 |
Chr6 | CDS | 41970958 | 41971044 | 41970958 | ID=cds.MsaT031999.1;Parent=MsaT031999.1 |
Chr6 | exon | 41971162 | 41971275 | 41971162 | ID=MsaT031999.1.exon6;Parent=MsaT031999.1 |
Chr6 | CDS | 41971162 | 41971275 | 41971162 | ID=cds.MsaT031999.1;Parent=MsaT031999.1 |
Chr6 | exon | 41971575 | 41971641 | 41971575 | ID=MsaT031999.1.exon5;Parent=MsaT031999.1 |
Chr6 | CDS | 41971575 | 41971641 | 41971575 | ID=cds.MsaT031999.1;Parent=MsaT031999.1 |
Chr6 | exon | 41971962 | 41972023 | 41971962 | ID=MsaT031999.1.exon4;Parent=MsaT031999.1 |
Chr6 | CDS | 41971962 | 41972023 | 41971962 | ID=cds.MsaT031999.1;Parent=MsaT031999.1 |
Chr6 | exon | 41972107 | 41972181 | 41972107 | ID=MsaT031999.1.exon3;Parent=MsaT031999.1 |
Chr6 | CDS | 41972107 | 41972181 | 41972107 | ID=cds.MsaT031999.1;Parent=MsaT031999.1 |
Chr6 | exon | 41972740 | 41972787 | 41972740 | ID=MsaT031999.1.exon2;Parent=MsaT031999.1 |
Chr6 | CDS | 41972740 | 41972787 | 41972740 | ID=cds.MsaT031999.1;Parent=MsaT031999.1 |
Chr6 | exon | 41974088 | 41974246 | 41974088 | ID=MsaT031999.1.exon1;Parent=MsaT031999.1 |
Chr6 | CDS | 41974088 | 41974246 | 41974088 | ID=cds.MsaT031999.1;Parent=MsaT031999.1 |
Gene Sequence |
Protein sequence |