AlfalfaGEDB | MsaG032202

M. sativa ssp. caerulea / MsaG032202

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032202	KEH16541.1	78.070	114	25	0	1	114	1	114	1.04e-60	191

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032202	tr\|G7K0A2\|G7K0A2_MEDTR	78.070	114	25	0	1	114	1	114	4.97e-61	191

TFs/TRs:

Gene ID	Type	Classification
MsaG032202	TF	B3

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000093	MsaG032202	0.807787	7.245311e-50	1.173080e-47
MsaG000287	MsaG032202	0.816211	1.078398e-51	2.149679e-49
MsaG000329	MsaG032202	0.809535	3.079442e-50	5.200232e-48
MsaG000476	MsaG032202	0.844705	1.199955e-58	5.445312e-56
MsaG000747	MsaG032202	0.865465	1.158648e-64	1.115106e-61
MsaG001188	MsaG032202	0.837348	1.005043e-56	3.613063e-54
MsaG001328	MsaG032202	0.810314	2.096714e-50	3.608145e-48
MsaG001496	MsaG032202	0.811769	1.018037e-50	1.815349e-48
MsaG001660	MsaG032202	0.858074	2.064294e-62	1.492585e-59
MsaG002536	MsaG032202	0.829350	9.701962e-55	2.755894e-52
MsaG002966	MsaG032202	0.862771	7.935296e-64	6.863847e-61
MsaG003289	MsaG032202	0.856911	4.541151e-62	3.145023e-59
MsaG003515	MsaG032202	0.826041	5.996697e-54	1.552620e-51
MsaG003901	MsaG032202	0.835816	2.457511e-56	8.435335e-54
MsaG004271	MsaG032202	0.804762	3.121361e-49	4.706124e-47
MsaG004446	MsaG032202	0.835645	2.714216e-56	9.268863e-54
MsaG004938	MsaG032202	0.818937	2.637597e-52	5.641041e-50
MsaG004939	MsaG032202	0.812614	6.674449e-51	1.215291e-48
MsaG004940	MsaG032202	0.836905	1.303102e-56	4.621915e-54
MsaG005482	MsaG032202	0.803631	5.355689e-49	7.865621e-47
MsaG006133	MsaG032202	0.805020	2.758490e-49	4.184136e-47
MsaG006122	MsaG032202	0.811039	1.464469e-50	2.565091e-48
MsaG006580	MsaG032202	0.822607	3.814082e-53	8.990739e-51
MsaG006623	MsaG032202	0.809158	3.706175e-50	6.201763e-48
MsaG006625	MsaG032202	0.851524	1.604223e-60	9.163678e-58
MsaG007000	MsaG032202	0.808503	5.109854e-50	8.416755e-48
MsaG007159	MsaG032202	0.803808	4.921887e-49	7.258399e-47
MsaG007213	MsaG032202	0.805089	2.668761e-49	4.054416e-47
MsaG007634	MsaG032202	0.826616	4.382047e-54	1.152780e-51
MsaG008036	MsaG032202	0.883818	6.964060e-71	1.506267e-67
MsaG008265	MsaG032202	0.807531	8.209804e-50	1.321046e-47
MsaG009009	MsaG032202	0.821440	7.090119e-53	1.619890e-50
MsaG009639	MsaG032202	0.820400	1.226896e-52	2.727145e-50
MsaG010252	MsaG032202	0.803541	5.588239e-49	8.190485e-47
MsaG011235	MsaG032202	0.800673	2.159258e-48	2.964244e-46
MsaG011468	MsaG032202	0.807480	8.416358e-50	1.352623e-47
MsaG011605	MsaG032202	0.803927	4.651220e-49	6.878209e-47
MsaG011971	MsaG032202	0.811633	1.089824e-50	1.936848e-48
MsaG012023	MsaG032202	0.880148	1.471056e-69	2.673012e-66
MsaG012507	MsaG032202	0.817449	5.706197e-52	1.174247e-49
MsaG012633	MsaG032202	0.827144	3.282469e-54	8.763220e-52
MsaG012671	MsaG032202	0.806926	1.100866e-49	1.746155e-47
MsaG012761	MsaG032202	0.816044	1.174871e-51	2.331964e-49
MsaG015184	MsaG032202	0.806647	1.260578e-49	1.986420e-47
MsaG015515	MsaG032202	0.809463	3.189763e-50	5.377262e-48
MsaG015461	MsaG032202	0.832449	1.699433e-55	5.279010e-53
MsaG016293	MsaG032202	0.819604	1.862268e-52	4.052857e-50
MsaG016946	MsaG032202	0.834050	6.814882e-56	2.218673e-53
MsaG016980	MsaG032202	0.826171	5.585680e-54	1.451411e-51
MsaG017150	MsaG032202	0.815212	1.796172e-51	3.490864e-49
MsaG017354	MsaG032202	0.874779	1.069961e-67	1.523982e-64
MsaG017464	MsaG032202	0.803573	5.504062e-49	8.072864e-47
MsaG017589	MsaG032202	0.829630	8.302171e-55	2.377424e-52
MsaG017656	MsaG032202	0.813627	4.010734e-51	7.490098e-49
MsaG017773	MsaG032202	0.899186	5.822848e-77	2.839856e-73
MsaG017972	MsaG032202	0.803859	4.803615e-49	7.092351e-47
MsaG018190	MsaG032202	0.818241	3.787670e-52	7.954957e-50
MsaG018290	MsaG032202	0.800464	2.381288e-48	3.253551e-46
MsaG018874	MsaG032202	0.806708	1.223721e-49	1.931133e-47
MsaG019018	MsaG032202	0.923858	3.992435e-89	1.001879e-84
MsaG019084	MsaG032202	0.804303	3.888656e-49	5.800978e-47
MsaG019093	MsaG032202	0.877929	8.864987e-69	1.454160e-65
MsaG019115	MsaG032202	0.811783	1.010928e-50	1.803309e-48
MsaG019273	MsaG032202	0.802614	8.672979e-49	1.244287e-46
MsaG019296	MsaG032202	0.847374	2.273819e-59	1.127475e-56
MsaG019732	MsaG032202	0.851228	1.943788e-60	1.099039e-57
MsaG019793	MsaG032202	0.842201	5.555007e-58	2.324817e-55
MsaG020023	MsaG032202	0.837722	8.066396e-57	2.933196e-54
MsaG020130	MsaG032202	0.801392	1.541676e-48	2.151027e-46
MsaG020402	MsaG032202	0.812965	5.595800e-51	1.027864e-48
MsaG020566	MsaG032202	0.872430	6.563992e-67	8.436810e-64
MsaG021105	MsaG032202	0.818721	2.951316e-52	6.276090e-50
MsaG022300	MsaG032202	0.808514	5.081198e-50	8.371890e-48
MsaG023929	MsaG032202	0.820694	1.051169e-52	2.354570e-50
MsaG024271	MsaG032202	0.806590	1.295325e-49	2.038510e-47
MsaG024453	MsaG032202	0.809241	3.558068e-50	5.965624e-48
MsaG025241	MsaG032202	0.807700	7.561805e-50	1.221743e-47
MsaG025654	MsaG032202	0.914347	5.278169e-84	6.667760e-80
MsaG026652	MsaG032202	0.815931	1.244416e-51	2.463003e-49
MsaG027136	MsaG032202	0.808984	4.036048e-50	6.725680e-48
MsaG027243	MsaG032202	0.852726	7.331332e-61	4.368621e-58
MsaG027303	MsaG032202	0.842846	3.752550e-58	1.603378e-55
MsaG027494	MsaG032202	0.824374	1.479717e-53	3.659266e-51
MsaG027661	MsaG032202	0.852805	6.960966e-61	4.159365e-58
MsaG028142	MsaG032202	0.841261	9.808502e-58	3.984059e-55
MsaG028154	MsaG032202	0.864153	2.972363e-64	2.714947e-61
MsaG028246	MsaG032202	0.806934	1.096785e-49	1.739974e-47
MsaG028263	MsaG032202	0.819057	2.477610e-52	5.315583e-50
MsaG028388	MsaG032202	0.913812	9.834936e-84	1.197772e-79
MsaG028862	MsaG032202	0.803205	6.554589e-49	9.532473e-47
MsaG028871	MsaG032202	0.887839	2.185019e-72	5.763982e-69
MsaG028908	MsaG032202	0.923700	4.919181e-89	1.220414e-84
MsaG029421	MsaG032202	0.895766	1.581019e-75	6.349255e-72
MsaG029600	MsaG032202	0.809232	3.573733e-50	5.990548e-48
MsaG032202	MsaG032422	0.816431	9.635279e-52	1.931408e-49
MsaG032202	MsaG032716	0.831454	2.984808e-55	9.006914e-53
MsaG032202	MsaG032766	0.840151	1.910195e-57	7.492119e-55
MsaG032202	MsaG033396	0.817828	4.690285e-52	9.746547e-50
MsaG032202	MsaG033540	0.823291	2.647650e-53	6.357658e-51
MsaG032202	MsaG033519	0.843114	3.186091e-58	1.373112e-55
MsaG032202	MsaG033744	0.819829	1.655516e-52	3.624395e-50
MsaG032202	MsaG033975	0.817687	5.047139e-52	1.044930e-49
MsaG032202	MsaG034220	0.880139	1.481848e-69	2.691327e-66
MsaG032202	MsaG034132	0.819554	1.911427e-52	4.154446e-50
MsaG032202	MsaG035000	0.818882	2.714145e-52	5.796106e-50
MsaG032202	MsaG035190	0.826865	3.823716e-54	1.012930e-51
MsaG032202	MsaG035203	0.839030	3.723765e-57	1.410267e-54
MsaG032202	MsaG035236	0.806044	1.686737e-49	2.620278e-47
MsaG032202	MsaG035465	0.824987	1.062626e-53	2.672122e-51
MsaG032202	MsaG036337	0.857568	2.911675e-62	2.066090e-59
MsaG032202	MsaG036450	0.826332	5.116218e-54	1.335342e-51
MsaG032202	MsaG036957	0.808282	5.692790e-50	9.327272e-48
MsaG032202	MsaG040733	0.816824	7.872421e-52	1.594109e-49
MsaG032202	MsaG041234	0.807959	6.665423e-50	1.083624e-47
MsaG032202	MsaG041916	0.911203	1.928924e-82	1.971791e-78
MsaG032202	MsaG042082	0.805083	2.676946e-49	4.066211e-47
MsaG032202	MsaG042321	0.805866	1.837424e-49	2.842453e-47
MsaG032202	MsaG042398	0.824848	1.145734e-53	2.870130e-51
MsaG032202	MsaG042557	0.839208	3.351061e-57	1.276037e-54
MsaG032202	MsaG042627	0.807554	8.118497e-50	1.307071e-47
MsaG032202	MsaG043571	0.822798	3.445937e-53	8.165066e-51
MsaG032202	MsaG044003	0.881760	3.900579e-70	7.645776e-67
MsaG032202	MsaG044227	0.882598	1.941457e-70	3.959220e-67
MsaG032202	MsaG044617	0.800607	2.227347e-48	3.053108e-46
MsaG032202	MsaG044788	0.933316	6.305595e-95	3.383537e-90
MsaG032202	MsaG044934	0.809225	3.587214e-50	6.012051e-48
MsaG032202	MsaG044971	0.805888	1.818304e-49	2.814326e-47
MsaG032202	MsaG045105	0.820232	1.339648e-52	2.964703e-50
MsaG032202	MsaG045285	0.829462	9.113467e-55	2.597132e-52
MsaG032202	MsaG045609	0.811306	1.282507e-50	2.261149e-48
MsaG032202	MsaG045952	0.833792	7.901702e-56	2.553018e-53
MsaG032202	MsaG046277	0.812966	5.592210e-51	1.027237e-48
MsaG032202	MsaG046530	0.849891	4.595745e-60	2.481407e-57
MsaG032202	MsaG046645	0.850929	2.358132e-60	1.319676e-57
MsaG032202	MsaG046928	0.880874	8.113197e-70	1.525540e-66
MsaG032202	MsaG046946	0.836550	1.603614e-56	5.627170e-54
MsaG032202	MsaG047047	0.816872	7.680531e-52	1.557190e-49
MsaG032202	MsaG002575	0.833118	1.161067e-55	3.678184e-53
MsaG032202	MsaG001460	0.847395	2.242955e-59	1.113051e-56
MsaG032202	MsaG002064	0.818610	3.126915e-52	6.630497e-50
MsaG032202	MsaG009465	0.847911	1.619915e-59	8.179355e-57
MsaG032202	MsaG008516	0.800968	1.880811e-48	2.599111e-46
MsaG032202	MsaG009125	0.813938	3.426835e-51	6.450039e-49
MsaG032202	MsaG008206	0.842888	3.657358e-58	1.564828e-55
MsaG032202	MsaG010579	0.812934	5.682633e-51	1.043005e-48
MsaG032202	MsaG008311	0.807549	8.138700e-50	1.310159e-47
MsaG032202	MsaG009665	0.811875	9.655882e-51	1.726366e-48
MsaG032202	MsaG008455	0.803212	6.534762e-49	9.504997e-47
MsaG032202	MsaG011738	0.808464	5.206534e-50	8.568143e-48
MsaG032202	MsaG017401	0.813807	3.662295e-51	6.870556e-49
MsaG032202	MsaG012735	0.837509	9.144164e-57	3.303751e-54
MsaG032202	MsaG013404	0.858636	1.406446e-62	1.038453e-59
MsaG032202	MsaG027109	0.836630	1.530015e-56	5.381854e-54
MsaG032202	MsaG027608	0.841037	1.122215e-57	4.526136e-55
MsaG032202	MsaG028732	0.820898	9.438371e-53	2.125751e-50
MsaG032202	MsaG033233	0.827703	2.413587e-54	6.545532e-52
MsaG032202	MsaG033253	0.864138	3.005089e-64	2.743067e-61
MsaG032202	MsaG030821	0.810300	2.111331e-50	3.632007e-48
MsaG032202	MsaG031954	0.806009	1.715019e-49	2.661947e-47
MsaG032202	MsaG032134	0.925148	7.168675e-90	1.988900e-85
MsaG032202	MsaG033585	0.831018	3.814961e-55	1.136740e-52
MsaG032202	MsaG031454	0.864131	3.018829e-64	2.754931e-61
MsaG032202	MsaG039604	0.857931	2.275499e-62	1.636615e-59
MsaG032202	MsaG034989	0.864176	2.923935e-64	2.673245e-61
MsaG032202	MsaG037655	0.812909	5.756010e-51	1.055806e-48
MsaG032202	MsaG036808	0.804838	3.010756e-49	4.547394e-47
MsaG032202	MsaG036798	0.854375	2.475425e-61	1.564104e-58
MsaG032202	MsaG040777	0.822752	3.531531e-53	8.357295e-51
MsaG032202	MsaG036540	0.801889	1.220532e-48	1.722334e-46
MsaG032202	MsaG036671	0.833140	1.146773e-55	3.635296e-53
MsaG032202	MsaG036786	0.882678	1.817067e-70	3.720735e-67
MsaG032202	MsaG040778	0.866188	6.864546e-65	6.802195e-62
MsaG032202	MsaG042416	0.803592	5.454159e-49	8.003231e-47
MsaG032202	MsaG043298	0.810345	2.065169e-50	3.556592e-48
MsaG032202	MsaG042135	0.842628	4.286453e-58	1.818811e-55

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032202	MtrunA17_Chr5g0421921	78.070	114	25	0	1	114	1	114	9.58e-65	191
MsaG032202	MtrunA17_Chr5g0421731	78.070	114	25	0	1	114	1	114	9.58e-65	191
MsaG032202	MtrunA17_Chr5g0421851	78.070	114	25	0	1	114	76	189	8.60e-64	192
MsaG032202	MtrunA17_Chr3g0077421	45.614	114	59	2	2	112	87	200	1.79e-27	100
MsaG032202	MtrunA17_Chr3g0077441	45.614	114	59	2	2	112	87	200	1.79e-27	100
MsaG032202	MtrunA17_Chr5g0429931	47.170	106	55	1	8	112	141	246	3.37e-26	97.8
MsaG032202	MtrunA17_Chr3g0077431	41.593	113	64	1	2	112	87	199	5.74e-26	95.9
MsaG032202	MtrunA17_Chr3g0077451	41.593	113	64	1	2	112	126	238	1.62e-25	95.9
MsaG032202	MtrunA17_Chr3g0077411	42.241	116	59	1	5	112	406	521	3.11e-21	87.4
MsaG032202	MtrunA17_Chr3g0077411	39.091	110	63	3	2	110	143	249	4.59e-13	63.9
MsaG032202	MtrunA17_Chr3g0077361	41.284	109	63	1	5	112	397	505	2.84e-20	84.3
MsaG032202	MtrunA17_Chr3g0077361	38.542	96	58	1	8	102	165	260	1.28e-12	62.8
MsaG032202	MtrunA17_Chr3g0077461	38.542	96	57	2	8	102	124	218	8.48e-11	57.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 12 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATTATGACATTTAGAACAAC+TGG	0.340079	6:-47084246	None:intergenic
AAATGATAACTATCTGTGTC+AGG	0.428925	6:+47084188	MsaT032202.1:CDS
GAAAAGTTTCGTACGAATGA+TGG	0.454090	6:+47084132	MsaT032202.1:CDS
AATGGCAGAAAGTGCAAGAA+TGG	0.476083	6:+47083867	None:intergenic
ATACTGCTCCGAAATTCTGA+TGG	0.547080	6:+47084087	MsaT032202.1:CDS
GAAATTCTGATGGAAAAGAG+TGG	0.586034	6:+47084097	MsaT032202.1:CDS
AATGATAACTATCTGTGTCA+GGG	0.592595	6:+47084189	MsaT032202.1:CDS
AGAAAGTGCAAGAATGGCTG+CGG	0.611130	6:+47083873	MsaT032202.1:CDS
AAATTCTGATGGAAAAGAGT+GGG	0.611424	6:+47084098	MsaT032202.1:CDS
TTTATAGCAAAAGTCACTAG+GGG	0.648357	6:+47083922	MsaT032202.1:CDS
AGTCACTAGGGGAAATAATG+CGG	0.682062	6:+47083933	MsaT032202.1:CDS
AAAAGAGTGGGAAGTTTCTG+CGG	0.682275	6:+47084110	MsaT032202.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	47083868	47084296	47083868	ID=MsaG032202
Chr6	mRNA	47083868	47084296	47083868	ID=MsaT032202.1;Parent=MsaG032202
Chr6	exon	47083868	47083954	47083868	ID=MsaT032202.1.exon1;Parent=MsaT032202.1
Chr6	CDS	47083868	47083954	47083868	ID=cds.MsaT032202.1;Parent=MsaT032202.1
Chr6	exon	47084039	47084296	47084039	ID=MsaT032202.1.exon2;Parent=MsaT032202.1
Chr6	CDS	47084039	47084296	47084039	ID=cds.MsaT032202.1;Parent=MsaT032202.1

Gene Sequence	>MsaT032202.1 ATGGCAGAAAGTGCAAGAATGGCTGCGGAAGCTTATCACACAGCAAATCCACATTTTATAGCAAAAGTCACTAGGGGAAATAATGCGTATGTTGATGCTACTTTTGCTTCACGCCATCTGAAAGAAAATGATTCTATACTGCTCCGAAATTCTGATGGAAAAGAGTGGGAAGTTTCTGCGGAAAAGTTTCGTACGAATGATGGTCAAATGATAATGACTAAATTTCATATATTCAAAAATGATAACTATCTGTGTCAGGGAGATTACTGTGCGTTCGAATTGATTGAGACAAATCCAGTTGTTCTAAATGTCATAATGTTTCGTGCGAGTGACTATGACAATTAA
Protein sequence	>MsaT032202.1 MAESARMAAEAYHTANPHFIAKVTRGNNAYVDATFASRHLKENDSILLRNSDGKEWEVSAEKFRTNDGQMIMTKFHIFKNDNYLCQGDYCAFELIETNPVVLNVIMFRASDYDN*