AlfalfaGEDB | MsaG032202

M. sativa ssp. caerulea / MsaG032202

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032202	KEH16541.1	78.070	114	25	0	1	114	1	114	1.04e-60	191

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032202	tr\|G7K0A2\|G7K0A2_MEDTR	78.070	114	25	0	1	114	1	114	4.97e-61	191

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TFs/TRs:

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Gene ID	Type	Classification
MsaG032202	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000093	MsaG032202	0.807787	7.245311e-50	1.173080e-47
MsaG000287	MsaG032202	0.816211	1.078398e-51	2.149679e-49
MsaG000329	MsaG032202	0.809535	3.079442e-50	5.200232e-48
MsaG000476	MsaG032202	0.844705	1.199955e-58	5.445312e-56
MsaG000747	MsaG032202	0.865465	1.158648e-64	1.115106e-61
MsaG001188	MsaG032202	0.837348	1.005043e-56	3.613063e-54
MsaG001328	MsaG032202	0.810314	2.096714e-50	3.608145e-48
MsaG001496	MsaG032202	0.811769	1.018037e-50	1.815349e-48
MsaG001660	MsaG032202	0.858074	2.064294e-62	1.492585e-59
MsaG002536	MsaG032202	0.829350	9.701962e-55	2.755894e-52

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032202	MtrunA17_Chr5g0421921	78.070	114	25	0	1	114	1	114	9.58e-65	191
MsaG032202	MtrunA17_Chr5g0421731	78.070	114	25	0	1	114	1	114	9.58e-65	191
MsaG032202	MtrunA17_Chr5g0421851	78.070	114	25	0	1	114	76	189	8.60e-64	192
MsaG032202	MtrunA17_Chr3g0077421	45.614	114	59	2	2	112	87	200	1.79e-27	100
MsaG032202	MtrunA17_Chr3g0077441	45.614	114	59	2	2	112	87	200	1.79e-27	100
MsaG032202	MtrunA17_Chr5g0429931	47.170	106	55	1	8	112	141	246	3.37e-26	97.8
MsaG032202	MtrunA17_Chr3g0077431	41.593	113	64	1	2	112	87	199	5.74e-26	95.9
MsaG032202	MtrunA17_Chr3g0077451	41.593	113	64	1	2	112	126	238	1.62e-25	95.9
MsaG032202	MtrunA17_Chr3g0077411	42.241	116	59	1	5	112	406	521	3.11e-21	87.4
MsaG032202	MtrunA17_Chr3g0077411	39.091	110	63	3	2	110	143	249	4.59e-13	63.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 12 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGTGGGAAGTTTCTG+CGG	0.682275	6:+47084110	MsaT032202.1:CDS
AAATGATAACTATCTGTGTC+AGG	0.428925	6:+47084188	MsaT032202.1:CDS
AAATTCTGATGGAAAAGAGT+GGG	0.611424	6:+47084098	MsaT032202.1:CDS
AATGATAACTATCTGTGTCA+GGG	0.592595	6:+47084189	MsaT032202.1:CDS
AATGGCAGAAAGTGCAAGAA+TGG	0.476083	6:+47083867	None:intergenic
AGAAAGTGCAAGAATGGCTG+CGG	0.611130	6:+47083873	MsaT032202.1:CDS
AGTCACTAGGGGAAATAATG+CGG	0.682062	6:+47083933	MsaT032202.1:CDS
ATACTGCTCCGAAATTCTGA+TGG	0.547080	6:+47084087	MsaT032202.1:CDS
ATTATGACATTTAGAACAAC+TGG	0.340079	6:-47084246	None:intergenic
GAAAAGTTTCGTACGAATGA+TGG	0.454090	6:+47084132	MsaT032202.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	47083868	47084296	47083868	ID=MsaG032202
Chr6	mRNA	47083868	47084296	47083868	ID=MsaT032202.1;Parent=MsaG032202
Chr6	exon	47083868	47083954	47083868	ID=MsaT032202.1.exon1;Parent=MsaT032202.1
Chr6	CDS	47083868	47083954	47083868	ID=cds.MsaT032202.1;Parent=MsaT032202.1
Chr6	exon	47084039	47084296	47084039	ID=MsaT032202.1.exon2;Parent=MsaT032202.1
Chr6	CDS	47084039	47084296	47084039	ID=cds.MsaT032202.1;Parent=MsaT032202.1

Gene Sequence	>MsaT032202.1 ATGGCAGAAAGTGCAAGAATGGCTGCGGAAGCTTATCACACAGCAAATCCACATTTTATAGCAAAAGTCACTAGGGGAAATAATGCGTATGTTGATGCTACTTTTGCTTCACGCCATCTGAAAGAAAATGATTCTATACTGCTCCGAAATTCTGATGGAAAAGAGTGGGAAGTTTCTGCGGAAAAGTTTCGTACGAATGATGGTCAAATGATAATGACTAAATTTCATATATTCAAAAATGATAACTATCTGTGTCAGGGAGATTACTGTGCGTTCGAATTGATTGAGACAAATCCAGTTGTTCTAAATGTCATAATGTTTCGTGCGAGTGACTATGACAATTAA
Protein sequence	>MsaT032202.1 MAESARMAAEAYHTANPHFIAKVTRGNNAYVDATFASRHLKENDSILLRNSDGKEWEVSAEKFRTNDGQMIMTKFHIFKNDNYLCQGDYCAFELIETNPVVLNVIMFRASDYDN*