Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG032348 | XP_039685680.1 | 89.625 | 800 | 77 | 2 | 1 | 794 | 1 | 800 | 0.0 | 1484 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG032348 | sp|Q9SZL8|FRS5_ARATH | 26.582 | 632 | 396 | 14 | 50 | 679 | 72 | 637 | 4.14e-68 | 244 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG032348 | tr|D3YBB9|D3YBB9_TRIRP | 78.395 | 810 | 148 | 5 | 14 | 812 | 54 | 847 | 0.0 | 1308 |
Gene ID | Type | Classification |
---|---|---|
MsaG032348 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG032348 | MtrunA17_Chr3g0088371 | 81.675 | 191 | 32 | 1 | 632 | 819 | 1 | 191 | 9.23e-104 | 318 |
MsaG032348 | MtrunA17_Chr2g0324011 | 30.660 | 636 | 361 | 12 | 52 | 679 | 8 | 571 | 1.39e-98 | 318 |
MsaG032348 | MtrunA17_Chr3g0082121 | 33.817 | 482 | 286 | 8 | 57 | 536 | 49 | 499 | 1.60e-85 | 286 |
MsaG032348 | MtrunA17_Chr3g0082121 | 29.630 | 135 | 86 | 3 | 608 | 741 | 529 | 655 | 1.99e-12 | 70.9 |
MsaG032348 | MtrunA17_Chr1g0202341 | 29.495 | 634 | 366 | 16 | 50 | 676 | 50 | 609 | 5.41e-82 | 276 |
MsaG032348 | MtrunA17_Chr1g0203721 | 26.282 | 780 | 462 | 18 | 1 | 757 | 16 | 705 | 2.23e-77 | 268 |
MsaG032348 | MtrunA17_Chr8g0363841 | 29.412 | 629 | 369 | 18 | 56 | 679 | 22 | 580 | 8.40e-77 | 262 |
MsaG032348 | MtrunA17_Chr5g0448761 | 25.983 | 712 | 452 | 15 | 50 | 755 | 59 | 701 | 2.24e-72 | 253 |
MsaG032348 | MtrunA17_Chr2g0296781 | 26.736 | 677 | 412 | 17 | 55 | 722 | 1 | 602 | 2.32e-69 | 243 |
MsaG032348 | MtrunA17_Chr6g0458391 | 26.709 | 629 | 358 | 14 | 57 | 676 | 231 | 765 | 3.73e-66 | 235 |
MsaG032348 | MtrunA17_Chr6g0477261 | 27.495 | 531 | 335 | 11 | 196 | 722 | 7 | 491 | 9.61e-63 | 223 |
MsaG032348 | MtrunA17_Chr1g0164591 | 34.375 | 320 | 195 | 4 | 147 | 464 | 1 | 307 | 4.10e-62 | 212 |
MsaG032348 | MtrunA17_Chr2g0287651 | 25.787 | 667 | 405 | 12 | 21 | 676 | 45 | 632 | 1.83e-61 | 223 |
MsaG032348 | MtrunA17_Chr5g0441581 | 25.672 | 670 | 408 | 17 | 39 | 703 | 25 | 609 | 4.38e-61 | 219 |
MsaG032348 | MtrunA17_Chr2g0329031 | 25.730 | 719 | 417 | 22 | 33 | 737 | 3 | 618 | 4.13e-58 | 211 |
MsaG032348 | MtrunA17_Chr5g0440451 | 24.536 | 754 | 458 | 19 | 1 | 735 | 1 | 662 | 8.38e-57 | 210 |
MsaG032348 | MtrunA17_Chr1g0172971 | 75.758 | 132 | 17 | 1 | 1 | 132 | 1 | 117 | 1.14e-56 | 204 |
MsaG032348 | MtrunA17_Chr1g0207551 | 25.257 | 681 | 425 | 15 | 57 | 732 | 40 | 641 | 2.04e-55 | 205 |
MsaG032348 | MtrunA17_Chr1g0196541 | 25.280 | 625 | 395 | 16 | 55 | 676 | 1 | 556 | 1.39e-53 | 198 |
MsaG032348 | MtrunA17_Chr1g0198761 | 27.172 | 633 | 373 | 19 | 56 | 674 | 52 | 610 | 7.98e-53 | 196 |
MsaG032348 | MtrunA17_Chr3g0118611 | 27.600 | 500 | 306 | 10 | 237 | 733 | 111 | 557 | 9.79e-53 | 196 |
MsaG032348 | MtrunA17_Chr3g0080351 | 25.552 | 724 | 441 | 19 | 15 | 732 | 44 | 675 | 2.65e-52 | 196 |
MsaG032348 | MtrunA17_Chr1g0203051 | 23.939 | 589 | 379 | 10 | 66 | 651 | 94 | 616 | 1.41e-51 | 191 |
MsaG032348 | MtrunA17_Chr7g0258861 | 34.921 | 315 | 175 | 7 | 46 | 352 | 2 | 294 | 6.25e-50 | 178 |
MsaG032348 | MtrunA17_Chr2g0287061 | 24.721 | 627 | 357 | 16 | 57 | 679 | 189 | 704 | 2.11e-48 | 184 |
MsaG032348 | MtrunA17_Chr2g0276841 | 26.133 | 662 | 392 | 21 | 65 | 712 | 84 | 662 | 1.16e-47 | 181 |
MsaG032348 | MtrunA17_Chr2g0290391 | 25.984 | 635 | 377 | 18 | 55 | 674 | 55 | 611 | 2.03e-46 | 177 |
MsaG032348 | MtrunA17_Chr2g0291591 | 26.975 | 519 | 316 | 16 | 14 | 515 | 29 | 501 | 2.07e-45 | 172 |
MsaG032348 | MtrunA17_Chr5g0448511 | 25.333 | 450 | 284 | 8 | 232 | 679 | 1 | 400 | 4.58e-43 | 164 |
MsaG032348 | MtrunA17_Chr2g0291581 | 25.359 | 627 | 385 | 16 | 54 | 676 | 74 | 621 | 8.11e-43 | 166 |
MsaG032348 | MtrunA17_Chr5g0431001 | 27.293 | 447 | 288 | 12 | 56 | 489 | 66 | 488 | 1.55e-41 | 159 |
MsaG032348 | MtrunA17_Chr2g0294841 | 25.873 | 630 | 375 | 20 | 57 | 671 | 51 | 603 | 7.64e-40 | 157 |
MsaG032348 | MtrunA17_Chr6g0475591 | 89.041 | 73 | 8 | 0 | 204 | 276 | 1 | 73 | 8.67e-39 | 138 |
MsaG032348 | MtrunA17_Chr1g0149131 | 28.814 | 118 | 74 | 3 | 349 | 462 | 1 | 112 | 5.05e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG032348 | AT4G38180.1 | 26.582 | 632 | 396 | 14 | 50 | 679 | 72 | 637 | 4.21e-69 | 244 |
MsaG032348 | AT4G15090.1 | 25.546 | 732 | 457 | 18 | 66 | 787 | 66 | 719 | 3.39e-59 | 216 |
MsaG032348 | AT4G15090.5 | 25.546 | 732 | 457 | 18 | 66 | 787 | 66 | 719 | 3.39e-59 | 216 |
MsaG032348 | AT4G15090.3 | 25.546 | 732 | 457 | 18 | 66 | 787 | 66 | 719 | 3.39e-59 | 216 |
MsaG032348 | AT4G15090.2 | 25.546 | 732 | 457 | 18 | 66 | 787 | 66 | 719 | 3.39e-59 | 216 |
MsaG032348 | AT4G15090.4 | 25.546 | 732 | 457 | 18 | 66 | 787 | 66 | 719 | 3.39e-59 | 216 |
MsaG032348 | AT1G76320.3 | 25.000 | 708 | 432 | 20 | 55 | 756 | 1 | 615 | 1.56e-50 | 189 |
MsaG032348 | AT2G27110.3 | 24.747 | 594 | 388 | 13 | 229 | 817 | 36 | 575 | 1.67e-50 | 189 |
MsaG032348 | AT3G06250.2 | 24.649 | 641 | 364 | 17 | 39 | 675 | 178 | 703 | 2.35e-50 | 190 |
MsaG032348 | AT3G06250.1 | 24.649 | 641 | 364 | 17 | 39 | 675 | 178 | 703 | 2.35e-50 | 190 |
MsaG032348 | AT3G06250.3 | 24.649 | 641 | 364 | 17 | 39 | 675 | 178 | 703 | 2.35e-50 | 190 |
MsaG032348 | AT1G76320.2 | 24.504 | 706 | 438 | 18 | 55 | 756 | 1 | 615 | 2.97e-50 | 189 |
MsaG032348 | AT1G76320.1 | 24.504 | 706 | 438 | 18 | 55 | 756 | 1 | 615 | 3.91e-50 | 189 |
MsaG032348 | AT1G76320.4 | 24.504 | 706 | 438 | 18 | 55 | 756 | 1 | 615 | 3.91e-50 | 189 |
MsaG032348 | AT2G27110.2 | 24.747 | 594 | 388 | 13 | 229 | 817 | 181 | 720 | 5.24e-50 | 190 |
MsaG032348 | AT2G27110.1 | 24.747 | 594 | 388 | 13 | 229 | 817 | 181 | 720 | 5.24e-50 | 190 |
MsaG032348 | AT3G22170.2 | 23.426 | 683 | 425 | 16 | 48 | 722 | 67 | 659 | 2.49e-48 | 184 |
MsaG032348 | AT3G22170.1 | 23.426 | 683 | 425 | 16 | 48 | 722 | 67 | 659 | 2.49e-48 | 184 |
MsaG032348 | AT5G18960.2 | 23.926 | 652 | 374 | 17 | 31 | 675 | 191 | 727 | 1.90e-46 | 178 |
MsaG032348 | AT5G18960.1 | 23.926 | 652 | 374 | 17 | 31 | 675 | 191 | 727 | 1.90e-46 | 178 |
MsaG032348 | AT4G38170.1 | 23.944 | 497 | 299 | 14 | 251 | 733 | 24 | 455 | 3.74e-44 | 168 |
MsaG032348 | AT1G10240.2 | 25.914 | 629 | 360 | 24 | 65 | 673 | 62 | 604 | 4.03e-44 | 170 |
MsaG032348 | AT1G10240.1 | 25.914 | 629 | 360 | 24 | 65 | 673 | 62 | 604 | 4.03e-44 | 170 |
MsaG032348 | AT5G28530.1 | 24.531 | 640 | 382 | 18 | 56 | 674 | 60 | 619 | 1.88e-40 | 159 |
MsaG032348 | AT1G80010.1 | 24.451 | 638 | 387 | 21 | 57 | 676 | 101 | 661 | 6.92e-40 | 158 |
MsaG032348 | AT5G28530.3 | 24.375 | 640 | 379 | 19 | 56 | 674 | 60 | 615 | 1.11e-39 | 157 |
MsaG032348 | AT5G28530.2 | 24.375 | 640 | 379 | 19 | 56 | 674 | 60 | 615 | 1.11e-39 | 157 |
MsaG032348 | AT2G32250.5 | 23.077 | 754 | 446 | 21 | 24 | 769 | 13 | 640 | 1.25e-39 | 157 |
MsaG032348 | AT2G32250.6 | 23.077 | 754 | 446 | 21 | 24 | 769 | 13 | 640 | 1.65e-39 | 157 |
MsaG032348 | AT2G32250.1 | 23.077 | 754 | 446 | 21 | 24 | 769 | 13 | 640 | 1.65e-39 | 157 |
MsaG032348 | AT2G32250.3 | 23.077 | 754 | 446 | 21 | 24 | 769 | 13 | 640 | 1.65e-39 | 157 |
MsaG032348 | AT2G32250.2 | 23.077 | 754 | 446 | 21 | 24 | 769 | 13 | 640 | 1.69e-39 | 157 |
MsaG032348 | AT2G32250.4 | 23.077 | 754 | 446 | 21 | 24 | 769 | 13 | 640 | 1.69e-39 | 157 |
MsaG032348 | AT2G32250.7 | 23.301 | 721 | 421 | 20 | 57 | 769 | 3 | 599 | 3.59e-39 | 156 |
MsaG032348 | AT2G32250.8 | 23.301 | 721 | 421 | 20 | 57 | 769 | 3 | 599 | 3.68e-39 | 156 |
MsaG032348 | AT1G52520.1 | 23.077 | 624 | 400 | 17 | 57 | 676 | 91 | 638 | 6.06e-36 | 145 |
MsaG032348 | AT4G19990.7 | 24.632 | 475 | 306 | 10 | 28 | 499 | 15 | 440 | 1.12e-31 | 133 |
MsaG032348 | AT4G19990.7 | 35.052 | 97 | 53 | 2 | 607 | 703 | 511 | 597 | 5.06e-11 | 67.0 |
MsaG032348 | AT4G19990.3 | 24.842 | 475 | 305 | 11 | 28 | 499 | 1 | 426 | 1.45e-31 | 132 |
MsaG032348 | AT4G19990.3 | 35.052 | 97 | 53 | 2 | 607 | 703 | 497 | 583 | 4.76e-11 | 67.0 |
MsaG032348 | AT4G19990.4 | 24.842 | 475 | 305 | 11 | 28 | 499 | 1 | 426 | 1.45e-31 | 132 |
MsaG032348 | AT4G19990.4 | 35.052 | 97 | 53 | 2 | 607 | 703 | 497 | 583 | 4.76e-11 | 67.0 |
MsaG032348 | AT4G19990.5 | 24.842 | 475 | 305 | 11 | 28 | 499 | 1 | 426 | 1.65e-31 | 132 |
MsaG032348 | AT4G19990.5 | 35.052 | 97 | 53 | 2 | 607 | 703 | 497 | 583 | 5.05e-11 | 67.0 |
MsaG032348 | AT4G19990.6 | 24.842 | 475 | 305 | 11 | 28 | 499 | 1 | 426 | 1.78e-31 | 132 |
MsaG032348 | AT4G19990.6 | 35.052 | 97 | 53 | 2 | 607 | 703 | 497 | 583 | 5.13e-11 | 67.0 |
MsaG032348 | AT4G19990.2 | 24.842 | 475 | 305 | 11 | 28 | 499 | 1 | 426 | 1.78e-31 | 132 |
MsaG032348 | AT4G19990.2 | 35.052 | 97 | 53 | 2 | 607 | 703 | 497 | 583 | 5.13e-11 | 67.0 |
MsaG032348 | AT4G19990.1 | 29.478 | 268 | 182 | 4 | 235 | 499 | 106 | 369 | 1.96e-30 | 128 |
MsaG032348 | AT4G19990.1 | 35.052 | 97 | 53 | 2 | 607 | 703 | 440 | 526 | 4.95e-11 | 67.0 |
MsaG032348 | AT5G28530.4 | 22.857 | 630 | 342 | 21 | 56 | 674 | 60 | 556 | 7.28e-22 | 101 |
MsaG032348 | AT5G28530.5 | 22.698 | 630 | 339 | 22 | 56 | 674 | 60 | 552 | 3.82e-21 | 99.0 |
Find 118 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 6:-50418214 | MsaT032348.1:CDS |
TAAATTTCAGTTGCCTTTAT+TGG | 0.138386 | 6:-50418804 | MsaT032348.1:intron |
CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 6:-50418256 | MsaT032348.1:CDS |
AATCGTCTGTGGTTTCTTAT+TGG | 0.195298 | 6:+50418677 | None:intergenic |
TTCTTTGACTTAATTGTATT+TGG | 0.198645 | 6:+50417400 | None:intergenic |
AAAACACCTGGAAAACTATT+TGG | 0.238411 | 6:+50418618 | None:intergenic |
TCTCCTGTTGGCCTGTTGTT+AGG | 0.292589 | 6:+50419851 | None:intergenic |
CGATCATGATCTTCAAAACT+TGG | 0.305304 | 6:+50417916 | None:intergenic |
TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 6:+50419660 | None:intergenic |
CAACTAGATTATTCTCTATT+CGG | 0.323831 | 6:-50419344 | MsaT032348.1:CDS |
TTGAAGATCTTGGAGTTCTT+AGG | 0.331625 | 6:-50417796 | MsaT032348.1:CDS |
ATGATTGTCAAAACCAATAA+AGG | 0.338356 | 6:+50418791 | None:intergenic |
GCCTTCGAATGTTGATGTTT+TGG | 0.338861 | 6:-50417965 | MsaT032348.1:CDS |
GCATACGATTTGCGTAAGTT+TGG | 0.338878 | 6:+50418400 | None:intergenic |
GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 6:+50419294 | None:intergenic |
GAGAGATGATGAAGCTTTAT+CGG | 0.365492 | 6:-50417308 | MsaT032348.1:CDS |
CTCGACGGTGTTCTTGAAGC+TGG | 0.383392 | 6:-50417556 | MsaT032348.1:CDS |
TTTGTTTCTTCCGATTGATA+AGG | 0.384635 | 6:+50417332 | None:intergenic |
AACAATAAATATCGGCCATT+AGG | 0.388497 | 6:-50419287 | MsaT032348.1:intron |
ACCGAACAAACAATAAATAT+CGG | 0.389395 | 6:-50419295 | MsaT032348.1:CDS |
TTCCTTCAAATACTATTATG+AGG | 0.399583 | 6:-50418082 | MsaT032348.1:CDS |
TTTGGTCTTTCTTTGAACTT+TGG | 0.401842 | 6:+50417418 | None:intergenic |
GAAGGCCTACCTCAGACTTT+AGG | 0.402909 | 6:-50418431 | MsaT032348.1:CDS |
CATGTCGTATGTTTGAGAAC+AGG | 0.415108 | 6:-50417840 | MsaT032348.1:CDS |
GAGAATGTCTTATGAAGTTA+TGG | 0.423129 | 6:-50419585 | MsaT032348.1:CDS |
GAAGTTATGGGTCAAGGAGT+TGG | 0.428685 | 6:-50419572 | MsaT032348.1:CDS |
GCTGTTGGTGAAACATCTGC+TGG | 0.428855 | 6:-50417457 | MsaT032348.1:CDS |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 6:-50419647 | MsaT032348.1:CDS |
TTGATATCGTTGTGCTTGAC+TGG | 0.433430 | 6:+50417648 | None:intergenic |
CATTATGTTTGTAACAAAGA+AGG | 0.436995 | 6:-50419899 | MsaT032348.1:CDS |
GAGGAGTTGCTTCTTTCTAA+AGG | 0.437852 | 6:-50417523 | MsaT032348.1:CDS |
TCCATGATTCTTTATTGCTA+GGG | 0.444266 | 6:+50420062 | None:intergenic |
TTCCATGATTCTTTATTGCT+AGG | 0.445442 | 6:+50420061 | None:intergenic |
TTCTTTGAACTTTGGTGCGG+TGG | 0.447203 | 6:+50417426 | None:intergenic |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 6:-50419782 | MsaT032348.1:CDS |
AGAGATGATGAAGCTTTATC+GGG | 0.447874 | 6:-50417307 | MsaT032348.1:CDS |
TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 6:-50418382 | MsaT032348.1:CDS |
ATGTGTATAAGATATATAGA+TGG | 0.452819 | 6:-50419730 | MsaT032348.1:CDS |
AATCCTAACAACAGGCCAAC+AGG | 0.455836 | 6:-50419854 | MsaT032348.1:CDS |
CTTGCTTTGCATTTATTCAC+AGG | 0.460007 | 6:-50418116 | MsaT032348.1:CDS |
ATTAAGTTTGTGAAAGTGAA+AGG | 0.460584 | 6:-50419815 | MsaT032348.1:CDS |
GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 6:-50419617 | MsaT032348.1:CDS |
GACCGCATCAGCTGACTGTT+GGG | 0.463150 | 6:+50418162 | None:intergenic |
GTTTACTTAATCCTAACAAC+AGG | 0.470860 | 6:-50419862 | MsaT032348.1:CDS |
CGCTTTAAAACATATTGTCC+AGG | 0.471916 | 6:+50417739 | None:intergenic |
CTAAGGTAACGCGAATGCTC+TGG | 0.476897 | 6:+50419677 | None:intergenic |
ATCATGATCGATTTGATGAA+AGG | 0.476999 | 6:-50417903 | MsaT032348.1:CDS |
GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 6:-50418383 | MsaT032348.1:CDS |
CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 6:+50418080 | None:intergenic |
CTTTCTAAAGGTATTCGTAC+AGG | 0.486879 | 6:-50417511 | MsaT032348.1:CDS |
GATCATGATCTTCAAAACTT+GGG | 0.487945 | 6:+50417917 | None:intergenic |
TATGAGGAGGACACAACAAA+AGG | 0.490908 | 6:-50418066 | MsaT032348.1:CDS |
GTCTTCAGTGCCAACATTGA+CGG | 0.491796 | 6:+50417672 | None:intergenic |
TTGAAGACTTAGATGGCGTC+GGG | 0.493598 | 6:+50417488 | None:intergenic |
CTGTTGGTGAAACATCTGCT+GGG | 0.493682 | 6:-50417456 | MsaT032348.1:CDS |
ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 6:-50418242 | MsaT032348.1:CDS |
TATGATGATGCTGATAATGA+TGG | 0.494079 | 6:-50417988 | MsaT032348.1:CDS |
CCCCTAGCAATAAAGAATCA+TGG | 0.497001 | 6:-50420063 | MsaT032348.1:CDS |
TGAATAAATGCAAAGCAAGA+AGG | 0.503349 | 6:+50418120 | None:intergenic |
TCTTTGAACTTTGGTGCGGT+GGG | 0.503874 | 6:+50417427 | None:intergenic |
TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 6:+50419788 | None:intergenic |
AGCTGGAATATATTTGAAGC+TGG | 0.507410 | 6:-50419765 | MsaT032348.1:CDS |
GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 6:-50418223 | MsaT032348.1:CDS |
ACAAAACAAGAAATCTGATA+AGG | 0.511435 | 6:-50419933 | MsaT032348.1:CDS |
CATTCTGTGAAGACAATACC+TGG | 0.513244 | 6:-50417757 | MsaT032348.1:CDS |
AGAATGTCTTATGAAGTTAT+GGG | 0.514493 | 6:-50419584 | MsaT032348.1:CDS |
GAATAAATGCAAAGCAAGAA+GGG | 0.521406 | 6:+50418121 | None:intergenic |
GAAAGGAAAACCTGAGGAAA+GGG | 0.523228 | 6:-50419798 | MsaT032348.1:CDS |
GGTAATTATGCATATAACAC+TGG | 0.523547 | 6:-50419995 | MsaT032348.1:CDS |
TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 6:-50419888 | MsaT032348.1:CDS |
TAAGATATATAGATGGGATG+TGG | 0.528498 | 6:-50419723 | MsaT032348.1:CDS |
CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 6:+50418085 | None:intergenic |
TGGGCTTTGTTCATGGCACA+TGG | 0.532868 | 6:-50418592 | MsaT032348.1:CDS |
CCATGATTCTTTATTGCTAG+GGG | 0.537011 | 6:+50420063 | None:intergenic |
ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 6:-50418065 | MsaT032348.1:CDS |
AATCGAACAAGTGAGTGGTC+TGG | 0.543268 | 6:+50418279 | None:intergenic |
AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 6:-50419887 | MsaT032348.1:CDS |
AAGATCTTGGAGTTCTTAGG+TGG | 0.553166 | 6:-50417793 | MsaT032348.1:CDS |
TTCACAAACTTAATAACCAG+TGG | 0.557039 | 6:+50419824 | None:intergenic |
ATGTCGTATGTTTGAGAACA+GGG | 0.560861 | 6:-50417839 | MsaT032348.1:CDS |
TGAAAGGAAAACCTGAGGAA+AGG | 0.564234 | 6:-50419799 | MsaT032348.1:CDS |
CTGAAATCGACCGTCAATGT+TGG | 0.564487 | 6:-50417682 | MsaT032348.1:CDS |
GGCCTACCTCAGACTTTAGG+TGG | 0.565384 | 6:-50418428 | MsaT032348.1:CDS |
TGAAGCTTTATCGGGGATTG+TGG | 0.567024 | 6:-50417299 | MsaT032348.1:CDS |
TCTTCAAAAGTAGCTGCTGT+TGG | 0.568528 | 6:-50417472 | MsaT032348.1:CDS |
GGACCGCATCAGCTGACTGT+TGG | 0.570066 | 6:+50418161 | None:intergenic |
GAATGCTCTGGTTTATGTAA+TGG | 0.573489 | 6:+50419689 | None:intergenic |
TTTGAAGACTTAGATGGCGT+CGG | 0.575863 | 6:+50417487 | None:intergenic |
TCTTATGAAGTTATGGGTCA+AGG | 0.577681 | 6:-50419578 | MsaT032348.1:CDS |
ATCATGATCTTCAAAACTTG+GGG | 0.577988 | 6:+50417918 | None:intergenic |
GTTATGGGTCAAGGAGTTGG+AGG | 0.578191 | 6:-50419569 | MsaT032348.1:CDS |
AACACAATAATGCACTAGCC+TGG | 0.584768 | 6:+50418646 | None:intergenic |
ATCCCAACAGTCAGCTGATG+CGG | 0.597403 | 6:-50418164 | MsaT032348.1:CDS |
ACCAGTGGACTGTCTCCTGT+TGG | 0.597678 | 6:+50419839 | None:intergenic |
CTTACGCAAATCGTATGCAT+TGG | 0.597846 | 6:-50418395 | MsaT032348.1:CDS |
TGTGTATAAGATATATAGAT+GGG | 0.601002 | 6:-50419729 | MsaT032348.1:CDS |
TCACTGATTCATGCTGAGAG+TGG | 0.606950 | 6:-50420142 | MsaT032348.1:CDS |
TCCAAAACATCAACATTCGA+AGG | 0.607058 | 6:+50417964 | None:intergenic |
CTTCAAATACTATTATGAGG+AGG | 0.607664 | 6:-50418079 | MsaT032348.1:CDS |
GAGAGTGGACAATTGAGTGT+TGG | 0.619445 | 6:-50420127 | MsaT032348.1:CDS |
GGAAAACCTGAGGAAAGGGT+TGG | 0.621919 | 6:-50419794 | MsaT032348.1:CDS |
TGTTGGTGAAACATCTGCTG+GGG | 0.639082 | 6:-50417455 | MsaT032348.1:CDS |
CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 6:-50418241 | MsaT032348.1:CDS |
TGGTCTGTATAAATCGTCTG+TGG | 0.650424 | 6:+50418666 | None:intergenic |
GATTTCAGCTTATCGACAGA+CGG | 0.652942 | 6:+50417697 | None:intergenic |
GACAAGCCACCTAAAGTCTG+AGG | 0.653221 | 6:+50418422 | None:intergenic |
TGTCGTATGTTTGAGAACAG+GGG | 0.653807 | 6:-50417838 | MsaT032348.1:CDS |
TAAAGAATCGAACAAGTGAG+TGG | 0.654901 | 6:+50418274 | None:intergenic |
ATGATGATGCTGATAATGAT+GGG | 0.657050 | 6:-50417987 | MsaT032348.1:CDS |
ACATCAACTACATCTGAGAG+TGG | 0.657961 | 6:-50420187 | MsaT032348.1:CDS |
TCTTTCTTTGAACTTTGGTG+CGG | 0.659854 | 6:+50417423 | None:intergenic |
GCCAACAGGAGACAGTCCAC+TGG | 0.662913 | 6:-50419840 | MsaT032348.1:CDS |
AATAAATGCAAAGCAAGAAG+GGG | 0.664515 | 6:+50418122 | None:intergenic |
AGCCACCTAAAGTCTGAGGT+AGG | 0.684957 | 6:+50418426 | None:intergenic |
GAGATGATGAAGCTTTATCG+GGG | 0.689274 | 6:-50417306 | MsaT032348.1:CDS |
AGGGGTGTACTTGTTTACAA+CGG | 0.695086 | 6:+50418140 | None:intergenic |
GAAAGTGAAAGGAAAACCTG+AGG | 0.703059 | 6:-50419804 | MsaT032348.1:CDS |
ACAGACGATTTATACAGACC+AGG | 0.720235 | 6:-50418664 | MsaT032348.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr6 | gene | 50417288 | 50420218 | 50417288 | ID=MsaG032348 |
Chr6 | mRNA | 50417288 | 50420218 | 50417288 | ID=MsaT032348.1;Parent=MsaG032348 |
Chr6 | exon | 50417288 | 50418816 | 50417288 | ID=MsaT032348.1.exon2;Parent=MsaT032348.1 |
Chr6 | CDS | 50417288 | 50418816 | 50417288 | ID=cds.MsaT032348.1;Parent=MsaT032348.1 |
Chr6 | exon | 50419288 | 50420218 | 50419288 | ID=MsaT032348.1.exon1;Parent=MsaT032348.1 |
Chr6 | CDS | 50419288 | 50420218 | 50419288 | ID=cds.MsaT032348.1;Parent=MsaT032348.1 |
Gene Sequence |
Protein sequence |