AlfalfaGEDB | MsaG032348

M. sativa ssp. caerulea / MsaG032348

KEGG: K17604
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032348	XP_039685680.1	89.625	800	77	2	1	794	1	800	0.0	1484

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032348	sp\|Q9SZL8\|FRS5_ARATH	26.582	632	396	14	50	679	72	637	4.14e-68	244

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032348	tr\|D3YBB9\|D3YBB9_TRIRP	78.395	810	148	5	14	812	54	847	0.0	1308

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TFs/TRs:

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Gene ID	Type	Classification
MsaG032348	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032348	MtrunA17_Chr3g0088371	81.675	191	32	1	632	819	1	191	9.23e-104	318
MsaG032348	MtrunA17_Chr2g0324011	30.660	636	361	12	52	679	8	571	1.39e-98	318
MsaG032348	MtrunA17_Chr3g0082121	33.817	482	286	8	57	536	49	499	1.60e-85	286
MsaG032348	MtrunA17_Chr3g0082121	29.630	135	86	3	608	741	529	655	1.99e-12	70.9
MsaG032348	MtrunA17_Chr1g0202341	29.495	634	366	16	50	676	50	609	5.41e-82	276
MsaG032348	MtrunA17_Chr1g0203721	26.282	780	462	18	1	757	16	705	2.23e-77	268
MsaG032348	MtrunA17_Chr8g0363841	29.412	629	369	18	56	679	22	580	8.40e-77	262
MsaG032348	MtrunA17_Chr5g0448761	25.983	712	452	15	50	755	59	701	2.24e-72	253
MsaG032348	MtrunA17_Chr2g0296781	26.736	677	412	17	55	722	1	602	2.32e-69	243
MsaG032348	MtrunA17_Chr6g0458391	26.709	629	358	14	57	676	231	765	3.73e-66	235

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032348	AT4G38180.1	26.582	632	396	14	50	679	72	637	4.21e-69	244
MsaG032348	AT4G15090.1	25.546	732	457	18	66	787	66	719	3.39e-59	216
MsaG032348	AT4G15090.5	25.546	732	457	18	66	787	66	719	3.39e-59	216
MsaG032348	AT4G15090.3	25.546	732	457	18	66	787	66	719	3.39e-59	216
MsaG032348	AT4G15090.2	25.546	732	457	18	66	787	66	719	3.39e-59	216
MsaG032348	AT4G15090.4	25.546	732	457	18	66	787	66	719	3.39e-59	216
MsaG032348	AT1G76320.3	25.000	708	432	20	55	756	1	615	1.56e-50	189
MsaG032348	AT2G27110.3	24.747	594	388	13	229	817	36	575	1.67e-50	189
MsaG032348	AT3G06250.2	24.649	641	364	17	39	675	178	703	2.35e-50	190
MsaG032348	AT3G06250.1	24.649	641	364	17	39	675	178	703	2.35e-50	190

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Find 118 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACCTGGAAAACTATT+TGG	0.238411	6:+50418618	None:intergenic
AACAAAGAAGGTTTCAAGAA+GGG	0.545537	6:-50419887	MsaT032348.1:CDS
AACAATAAATATCGGCCATT+AGG	0.388497	6:-50419287	MsaT032348.1:intron
AACACAATAATGCACTAGCC+TGG	0.584768	6:+50418646	None:intergenic
AAGATCTTGGAGTTCTTAGG+TGG	0.553166	6:-50417793	MsaT032348.1:CDS
AATAAATGCAAAGCAAGAAG+GGG	0.664515	6:+50418122	None:intergenic
AATCCTAACAACAGGCCAAC+AGG	0.455836	6:-50419854	MsaT032348.1:CDS
AATCGAACAAGTGAGTGGTC+TGG	0.543268	6:+50418279	None:intergenic
AATCGTCTGTGGTTTCTTAT+TGG	0.195298	6:+50418677	None:intergenic
ACAAAACAAGAAATCTGATA+AGG	0.511435	6:-50419933	MsaT032348.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	50417288	50420218	50417288	ID=MsaG032348
Chr6	mRNA	50417288	50420218	50417288	ID=MsaT032348.1;Parent=MsaG032348
Chr6	exon	50417288	50418816	50417288	ID=MsaT032348.1.exon2;Parent=MsaT032348.1
Chr6	CDS	50417288	50418816	50417288	ID=cds.MsaT032348.1;Parent=MsaT032348.1
Chr6	exon	50419288	50420218	50419288	ID=MsaT032348.1.exon1;Parent=MsaT032348.1
Chr6	CDS	50419288	50420218	50419288	ID=cds.MsaT032348.1;Parent=MsaT032348.1

Gene Sequence

>MsaT032348.1

ATGGATTTGACATCAACTACATCTGAGAGTGGACAACTGAGTGTTGAAACTTCATCACTGATTCATGCTGAGAGTGGACAATTGAGTGTTGGAAGTTCTTCAATGATTCATGCTGACAGTTCTCAATGTTACTCCCCTAGCAATAAAGAATCATGGAAGTCTTTAGTCTTTCAGTCTATTAAAGAGATTGAAGATTTTTATGGTAATTATGCATATAACACTGGATTTTCTATTAGGACTATGTTGAAGTCGAAAAATAATTCACAAAACAAGAAATCTGATAAGGTACATTATTTGCATTATGTTTGTAACAAAGAAGGTTTCAAGAAGGGAAGTTTACTTAATCCTAACAACAGGCCAACAGGAGACAGTCCACTGGTTATTAAGTTTGTGAAAGTGAAAGGAAAACCTGAGGAAAGGGTTGGTTGTAAAGCTGGAATATATTTGAAGCTGGATGAAGTTTTGAATGTGTATAAGATATATAGATGGGATGTGGATCACTGTCATCCATTACATAAACCAGAGCATTCGCGTTACCTTAGATCATTTCGAGAAGTAAATGAAGTTCAAGGACAACTAGCTCTTATAAATTCTAAAGCTGGAATGTTGATGAGAATGTCTTATGAAGTTATGGGTCAAGGAGTTGGAGGCACAGAGAATCTTCCTTTTTGGTTTTTAGACTTAAAGAACTATCTAATGACAATTCGTCAAAAAGAGATGGTGGTTGGTGAAGCAACTGTAATTCAAGAATTCTTTAGAAATAAAGCCTTCTCGAAACCATCTTTTTACTATGATATTCAAGTTGATGCTGCAGAAGACATAGCTAGTATTTTTTGGTCAGATGGAATTATGCAACTAGATTATTCTCTATTCGGCGATGTCATCAGTTTTGATACAACTTACCGAACAAACAATAAATATCGGCCATTAGTTGCCTTTATTGGTTTTGACAATCATCGAAAGAGTGTTTTGTTTGGTGCTGCACTATTGTACGATGAGACAGCAGCTACTTTTGATTGGTTGTTTAAAACATTCTTGAAGTGTATGTCCAATAAGAAACCACAGACGATTTATACAGACCAGGCTAGTGCATTATTGTGTTCAATTCCAAATAGTTTTCCAGGTGTTTTTCATGGGCTTTGTTCATGGCACATGGCAGAGAATGCAAAGAAAAATCTTGGCTTTCGTGCAAACAGTGCATTTTTTGATGAGTTAAATAATTTGGTTTCAAATGTAGATGATGAATCAGATTTTGACTATAATTGGGATCAAATGATGATAAATTGTTTTGATGGAAGGCCTACCTCAGACTTTAGGTGGCTTGTCCAAACTTACGCAAATCGTATGCATTGGTCTTCAGCTTGGGTCAAGTCACATTTTACAGCTGGTCTGAAAACGACTCAGTTAAGTGAGTCTTTCAATGCTTTTCTTCGTGGATTTCTACAGCCAGACCACTCACTTGTTCGATTCTTTAGTCATTTCAACATTATGGTTCAGAGAATGAGGGATAATCATGCTGAGTTGGACTTTAAGGCTGCAAACACTAGAACAAAAAATAATTATCCCAACAGTCAGCTGATGCGGTCCGTTGTAAACAAGTACACCCCTTCTTGCTTTGCATTTATTCACAGGCAGTATGACCTTTCCTTCAAATACTATTATGAGGAGGACACAACAAAAGGGTCTGCCTTTGAGAAGTTTTTCAAAGTTTTCACAATTGATAAGGTTGATGATAATTATGATGATGCTGATAATGATGGGCCTTCGAATGTTGATGTTTTGGATGCAGAACTTCAAGAAAACGTTTCCCCAAGTTTTGAAGATCATGATCGATTTGATGAAAGGCTTGTCACAGTTGACATTAGAAGCAAAAGTTTTAGTTGTTCATGTCGTATGTTTGAGAACAGGGGCTTCTTATGTCGACATGTTTTGAAGATCTTGGAGTTCTTAGGTGGACATGTGCAATATCATTCTGTGAAGACAATACCTGGACAATATGTTTTAAAGCGTTGGACTAGAGATGTGCGTCCGTCTGTCGATAAGCTGAAATCGACCGTCAATGTTGGCACTGAAGACACCAGTCAAGCACAACGATATCAACAAATTTGTGCTGTTACAGTTCAGCTTTCTACACGTTTTTGTGCAGATCCAGAGTCATCTAAAATTTTTCTCGACGGTGTTCTTGAAGCTGGAAAAAAGGCAGAGGAGTTGCTTCTTTCTAAAGGTATTCGTACAGGCCCGACGCCATCTAAGTCTTCAAAAGTAGCTGCTGTTGGTGAAACATCTGCTGGGGTGAAGCCCACCGCACCAAAGTTCAAAGAAAGACCAAATACAATTAAGTCAAAGAAGCGACTTAAAAGTGATTATGAAAAAGCTAGAGAAAGGCAAAAATTCCTTATCAATCGGAAGAAACAAAAGAGAGATGATGAAGCTTTATCGGGGATTGTGGTCCCTGATTGA

Protein sequence

>MsaT032348.1

MDLTSTTSESGQLSVETSSLIHAESGQLSVGSSSMIHADSSQCYSPSNKESWKSLVFQSIKEIEDFYGNYAYNTGFSIRTMLKSKNNSQNKKSDKVHYLHYVCNKEGFKKGSLLNPNNRPTGDSPLVIKFVKVKGKPEERVGCKAGIYLKLDEVLNVYKIYRWDVDHCHPLHKPEHSRYLRSFREVNEVQGQLALINSKAGMLMRMSYEVMGQGVGGTENLPFWFLDLKNYLMTIRQKEMVVGEATVIQEFFRNKAFSKPSFYYDIQVDAAEDIASIFWSDGIMQLDYSLFGDVISFDTTYRTNNKYRPLVAFIGFDNHRKSVLFGAALLYDETAATFDWLFKTFLKCMSNKKPQTIYTDQASALLCSIPNSFPGVFHGLCSWHMAENAKKNLGFRANSAFFDELNNLVSNVDDESDFDYNWDQMMINCFDGRPTSDFRWLVQTYANRMHWSSAWVKSHFTAGLKTTQLSESFNAFLRGFLQPDHSLVRFFSHFNIMVQRMRDNHAELDFKAANTRTKNNYPNSQLMRSVVNKYTPSCFAFIHRQYDLSFKYYYEEDTTKGSAFEKFFKVFTIDKVDDNYDDADNDGPSNVDVLDAELQENVSPSFEDHDRFDERLVTVDIRSKSFSCSCRMFENRGFLCRHVLKILEFLGGHVQYHSVKTIPGQYVLKRWTRDVRPSVDKLKSTVNVGTEDTSQAQRYQQICAVTVQLSTRFCADPESSKIFLDGVLEAGKKAEELLLSKGIRTGPTPSKSSKVAAVGETSAGVKPTAPKFKERPNTIKSKKRLKSDYEKARERQKFLINRKKQKRDDEALSGIVVPD*