AlfalfaGEDB | MsaG032456

M. sativa ssp. caerulea / MsaG032456

KEGG: -
GO: -
PFAM: PF00628.32

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032456	XP_023548871.1	64.789	71	25	0	3	73	181	251	5.27e-25	103

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032456	sp\|Q8H383\|ALFL2_ORYSJ	57.143	63	27	0	11	73	181	243	1.18e-20	84.3

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032456	tr\|A0A6J1GNM8\|A0A6J1GNM8_CUCMO	64.789	71	24	1	3	73	181	250	9.30e-24	99.4

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG032456	TR	PHD

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000045	MsaG032456	0.820500	1.163779e-52	2.593693e-50
MsaG000062	MsaG032456	0.819243	2.249274e-52	4.849274e-50
MsaG000070	MsaG032456	0.815572	1.494818e-51	2.931768e-49
MsaG000083	MsaG032456	0.863156	6.040621e-64	5.304484e-61
MsaG000110	MsaG032456	0.800149	2.758408e-48	3.742015e-46
MsaG000113	MsaG032456	0.831197	3.449216e-55	1.033036e-52
MsaG000140	MsaG032456	0.826892	3.768665e-54	9.990710e-52
MsaG000153	MsaG032456	0.812579	6.792998e-51	1.235835e-48
MsaG000188	MsaG032456	0.817616	5.233486e-52	1.081576e-49
MsaG000235	MsaG032456	0.829128	1.097611e-54	3.098093e-52

Showing 1 to 10 of 1,394 entries

Previous1 2 3 4 5…140Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032456	MtrunA17_Chr8g0343441	67.797	59	19	0	16	74	198	256	1.67e-24	91.7
MsaG032456	MtrunA17_Chr2g0329821	63.793	58	21	0	16	73	193	250	4.17e-22	85.5
MsaG032456	MtrunA17_Chr1g0150821	65.455	55	18	1	20	74	210	263	7.56e-21	82.4
MsaG032456	MtrunA17_Chr2g0300241	60.000	60	21	2	17	74	195	253	4.52e-19	77.4
MsaG032456	MtrunA17_Chr4g0006381	61.818	55	20	1	20	74	189	242	5.39e-19	77.0
MsaG032456	MtrunA17_Chr4g0076771	59.615	52	21	0	19	70	201	252	2.05e-18	75.9
MsaG032456	MtrunA17_Chr7g0242511	58.182	55	22	1	20	74	189	242	2.33e-18	75.5

Showing 1 to 7 of 7 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032456	AT5G20510.2	61.017	59	22	1	16	74	162	219	2.75e-21	83.2
MsaG032456	AT5G20510.1	61.017	59	22	1	16	74	203	260	6.14e-21	82.8
MsaG032456	AT5G26210.1	64.286	56	19	1	18	73	200	254	5.66e-20	80.5
MsaG032456	AT3G42790.1	61.017	59	22	1	16	74	193	250	7.68e-20	79.7
MsaG032456	AT2G02470.1	61.818	55	20	1	20	74	203	256	2.16e-19	79.0
MsaG032456	AT2G02470.2	61.818	55	20	1	20	74	194	247	2.44e-19	78.6
MsaG032456	AT1G14510.1	61.538	52	20	0	20	71	198	249	1.87e-18	76.3
MsaG032456	AT5G05610.2	58.824	51	21	0	16	66	184	234	2.34e-17	73.2
MsaG032456	AT5G05610.1	58.824	51	21	0	16	66	184	234	2.34e-17	73.2
MsaG032456	AT3G11200.1	54.902	51	23	0	16	66	189	239	3.60e-16	70.1

Showing 1 to 10 of 11 entries

Previous1 2Next

Find 20 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTGTGAATATCACCCC+TGG	0.663451	6:-53061479	MsaT032456.1:CDS
AAGTTCTTCCATATCTCTCA+TGG	0.494470	6:+53061616	None:intergenic
AATATGACCCTGATAAATTC+TGG	0.489252	6:-53061538	MsaT032456.1:CDS
ACACACGCCCATGAGAGATA+TGG	0.451540	6:-53061624	None:intergenic
AGTTCTTCCATATCTCTCAT+GGG	0.595111	6:+53061617	None:intergenic
ATTTGTGAGAGGTGGTTCCA+TGG	0.579292	6:-53061503	MsaT032456.1:CDS
CCGAAAATCCAGAATTTATC+AGG	0.249988	6:+53061530	None:intergenic
CGAAAATCCAGAATTTATCA+GGG	0.613625	6:+53061531	None:intergenic
CGATATGCTTAACCCTACCA+GGG	0.644955	6:+53061462	None:intergenic
CTCTTGTAGTCATTGCATGA+TGG	0.544814	6:+53061425	None:intergenic

Showing 1 to 10 of 20 entries

Previous1 2Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	53061412	53061636	53061412	ID=MsaG032456
Chr6	mRNA	53061412	53061636	53061412	ID=MsaT032456.1;Parent=MsaG032456
Chr6	exon	53061412	53061636	53061412	ID=MsaT032456.1.exon1;Parent=MsaT032456.1
Chr6	CDS	53061412	53061636	53061412	ID=cds.MsaT032456.1;Parent=MsaT032456.1

Gene Sequence	>MsaT032456.1 ATGAGAGATATGGAAGAACTTTTTGAGGAAGATGAAGATGAAGACGGAGAGAACTCATGCGGTGCATGCGGTGAGCAATATGACCCTGATAAATTCTGGATTTTCGGTGACATTTGTGAGAGGTGGTTCCATGGGAAATGTGTGAATATCACCCCTGGTAGGGTTAAGCATATCGATATATACAAGTGTCCATCATGCAATGACTACAAGAGAGATCGCCCTTGA
Protein sequence	>MsaT032456.1 MRDMEELFEEDEDEDGENSCGACGEQYDPDKFWIFGDICERWFHGKCVNITPGRVKHIDIYKCPSCNDYKRDRP*