AlfalfaGEDB | MsaG032458

M. sativa ssp. caerulea / MsaG032458

KEGG: -
GO: GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141
PFAM: PF00628.32

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032458	PNX86934.1	72.222	54	15	0	6	59	31	84	1.31e-20	87.4

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032458	sp\|Q8H383\|ALFL2_ORYSJ	63.462	52	19	0	8	59	181	232	1.78e-18	78.2

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032458	tr\|A0A2K3M827\|A0A2K3M827_TRIPR	72.222	54	15	0	6	59	31	84	6.26e-21	87.4

TFs/TRs:

Gene ID	Type	Classification
MsaG032458	TR	PHD

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032458	MtrunA17_Chr8g0343441	72.340	47	13	0	13	59	198	244	1.03e-19	78.6
MsaG032458	MtrunA17_Chr2g0329821	68.085	47	15	0	13	59	193	239	1.32e-18	75.5
MsaG032458	MtrunA17_Chr1g0150821	72.093	43	12	0	17	59	210	252	6.02e-18	73.9
MsaG032458	MtrunA17_Chr4g0076771	65.909	44	15	0	16	59	201	244	1.55e-17	72.8
MsaG032458	MtrunA17_Chr7g0242511	65.116	43	15	0	17	59	189	231	3.37e-17	71.6
MsaG032458	MtrunA17_Chr4g0006381	65.116	43	15	0	17	59	189	231	4.02e-17	71.6
MsaG032458	MtrunA17_Chr2g0300241	62.500	48	16	1	14	59	195	242	1.18e-15	67.8

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032458	AT5G20510.2	65.957	47	16	13	59	162	208	3.08e-18	74.3
MsaG032458	AT5G20510.1	65.957	47	16	13	59	203	249	4.80e-18	74.7
MsaG032458	AT3G42790.1	65.957	47	16	13	59	193	239	1.11e-17	73.6
MsaG032458	AT5G26210.1	68.889	45	14	15	59	200	244	1.31e-17	73.6
MsaG032458	AT5G05610.2	59.574	47	19	13	59	184	230	5.90e-17	71.2
MsaG032458	AT5G05610.1	59.574	47	19	13	59	184	230	5.90e-17	71.2
MsaG032458	AT2G02470.1	67.442	43	14	17	59	203	245	1.27e-16	70.9
MsaG032458	AT2G02470.2	67.442	43	14	17	59	194	236	1.52e-16	70.5
MsaG032458	AT1G14510.1	67.442	43	14	17	59	198	240	2.74e-16	69.7
MsaG032458	AT3G11200.1	57.447	47	20	13	59	189	235	2.05e-15	67.4
MsaG032458	AT3G11200.2	57.447	47	20	13	59	176	222	2.87e-15	67.0

Find 15 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAGAAAATCCAGAATTTATC+AGG	0.245351	6:+53084000	None:intergenic
TCGATATGCTTAACCCTAGC+AGG	0.459889	6:+53083931	None:intergenic
GAGGAAGATGAAGATGAAGA+AGG	0.473888	6:-53084060	MsaT032458.1:CDS
AATATGACCCTGATAAATTC+TGG	0.489252	6:-53084008	MsaT032458.1:CDS
GTGTGAATATCACCCCTGCT+AGG	0.514666	6:-53083945	MsaT032458.1:CDS
TCTGTGACATTTGTGAGAGA+TGG	0.533709	6:-53083981	MsaT032458.1:CDS
TGTGAATATCACCCCTGCTA+GGG	0.571594	6:-53083944	MsaT032458.1:CDS
TGATATTCACACATTTCCCA+TGG	0.578749	6:+53083956	None:intergenic
CGATATGCTTAACCCTAGCA+GGG	0.587671	6:+53083932	None:intergenic
TTTGTGAGAGATGGTTCCAT+GGG	0.600358	6:-53083972	MsaT032458.1:CDS
ATTTGTGAGAGATGGTTCCA+TGG	0.610050	6:-53083973	MsaT032458.1:CDS
AGAAAATCCAGAATTTATCA+GGG	0.630317	6:+53084001	None:intergenic
GAAGAAGGAGAGAACTCATG+TGG	0.669374	6:-53084045	MsaT032458.1:CDS
GAGAACTCATGTGGTGCATG+CGG	0.697071	6:-53084036	MsaT032458.1:CDS
GATATGCTTAACCCTAGCAG+GGG	0.713226	6:+53083933	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	53083918	53084097	53083918	ID=MsaG032458
Chr6	mRNA	53083918	53084097	53083918	ID=MsaT032458.1;Parent=MsaG032458
Chr6	exon	53083918	53084097	53083918	ID=MsaT032458.1.exon1;Parent=MsaT032458.1
Chr6	CDS	53083918	53084097	53083918	ID=cds.MsaT032458.1;Parent=MsaT032458.1

Gene Sequence	>MsaT032458.1 ATGGAAGAACTTTTTGAGGAAGATGAAGATGAAGAAGGAGAGAACTCATGTGGTGCATGCGGTGAGCAATATGACCCTGATAAATTCTGGATTTTCTGTGACATTTGTGAGAGATGGTTCCATGGGAAATGTGTGAATATCACCCCTGCTAGGGTTAAGCATATCGATATATACAAGTGA
Protein sequence	>MsaT032458.1 MEELFEEDEDEEGENSCGACGEQYDPDKFWIFCDICERWFHGKCVNITPARVKHIDIYK*