AlfalfaGEDB | MsaG032472

M. sativa ssp. caerulea / MsaG032472

KEGG: -
GO: GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141
PFAM: PF00628.32

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032472	XP_022992372.1	67.797	59	19	0	1	59	182	240	8.22e-20	89.4

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032472	sp\|Q8H383\|ALFL2_ORYSJ	63.462	52	19	0	8	59	181	232	1.89e-18	78.2

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032472	tr\|A0A6J1JPM4\|A0A6J1JPM4_CUCMA	67.797	59	19	0	1	59	182	240	3.92e-20	89.4

TFs/TRs:

Gene ID	Type	Classification
MsaG032472	TR	PHD

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000431	MsaG032472	0.817939	4.428883e-52	9.229675e-50
MsaG000456	MsaG032472	0.807299	9.187506e-50	1.470224e-47
MsaG000551	MsaG032472	0.815383	1.646358e-51	3.213574e-49
MsaG000599	MsaG032472	0.803688	5.210424e-49	7.662738e-47
MsaG001237	MsaG032472	0.837268	1.053318e-56	3.777280e-54
MsaG001279	MsaG032472	0.816271	1.045982e-51	2.088241e-49
MsaG001454	MsaG032472	0.803106	6.870684e-49	9.969448e-47
MsaG001531	MsaG032472	0.828323	1.715047e-54	4.732695e-52
MsaG002013	MsaG032472	0.823251	2.704741e-53	6.487673e-51
MsaG003083	MsaG032472	0.814486	2.597585e-51	4.956705e-49
MsaG003200	MsaG032472	0.813349	4.614155e-51	8.556993e-49
MsaG003201	MsaG032472	0.828632	1.444738e-54	4.021621e-52
MsaG003202	MsaG032472	0.829601	8.437129e-55	2.414094e-52
MsaG003203	MsaG032472	0.808649	4.758007e-50	7.864964e-48
MsaG003276	MsaG032472	0.811655	1.077482e-50	1.915997e-48
MsaG003394	MsaG032472	0.840511	1.539405e-57	6.106711e-55
MsaG003468	MsaG032472	0.814989	2.012449e-51	3.889194e-49
MsaG004108	MsaG032472	0.800399	2.454271e-48	3.348423e-46
MsaG004373	MsaG032472	0.819873	1.617871e-52	3.546188e-50
MsaG005000	MsaG032472	0.828499	1.555924e-54	4.314999e-52
MsaG005008	MsaG032472	0.817606	5.261289e-52	1.087049e-49
MsaG005435	MsaG032472	0.815581	1.488167e-51	2.919364e-49
MsaG005438	MsaG032472	0.814925	2.079021e-51	4.011309e-49
MsaG005506	MsaG032472	0.826352	5.061513e-54	1.321842e-51
MsaG005532	MsaG032472	0.800648	2.184998e-48	2.997894e-46
MsaG005582	MsaG032472	0.819885	1.607884e-52	3.525393e-50
MsaG005838	MsaG032472	0.829710	7.939121e-55	2.278619e-52
MsaG005811	MsaG032472	0.801375	1.554332e-48	2.167837e-46
MsaG005864	MsaG032472	0.810950	1.530134e-50	2.674284e-48
MsaG006175	MsaG032472	0.822690	3.650366e-53	8.623890e-51
MsaG006529	MsaG032472	0.802940	7.433654e-49	1.074481e-46
MsaG007353	MsaG032472	0.810964	1.519945e-50	2.657363e-48
MsaG007729	MsaG032472	0.817087	6.875693e-52	1.401813e-49
MsaG007833	MsaG032472	0.801364	1.562593e-48	2.178793e-46
MsaG008461	MsaG032472	0.813753	3.762705e-51	7.049341e-49
MsaG008565	MsaG032472	0.839048	3.685993e-57	1.396737e-54
MsaG008569	MsaG032472	0.828936	1.221283e-54	3.428407e-52
MsaG008996	MsaG032472	0.803524	5.634808e-49	8.255322e-47
MsaG008999	MsaG032472	0.800485	2.358157e-48	3.223456e-46
MsaG009409	MsaG032472	0.813187	5.005140e-51	9.244858e-49
MsaG010066	MsaG032472	0.819531	1.934339e-52	4.201818e-50
MsaG010095	MsaG032472	0.812365	7.559685e-51	1.368019e-48
MsaG010394	MsaG032472	0.810612	1.809420e-50	3.136439e-48
MsaG010615	MsaG032472	0.807616	7.876165e-50	1.269939e-47
MsaG011275	MsaG032472	0.829930	7.022528e-55	2.028309e-52
MsaG011555	MsaG032472	0.801303	1.607781e-48	2.238687e-46
MsaG011646	MsaG032472	0.819683	1.786976e-52	3.897136e-50
MsaG011806	MsaG032472	0.805255	2.464632e-49	3.758692e-47
MsaG012341	MsaG032472	0.823892	1.917839e-53	4.680748e-51
MsaG012382	MsaG032472	0.820190	1.369632e-52	3.027676e-50
MsaG012388	MsaG032472	0.823021	3.059070e-53	7.292039e-51
MsaG012422	MsaG032472	0.808845	4.320569e-50	7.175939e-48
MsaG042632	MsaG032472	0.830842	4.212243e-55	1.248779e-52
MsaG043663	MsaG032472	0.826379	4.988170e-54	1.303639e-51
MsaG043665	MsaG032472	0.808467	5.199288e-50	8.556898e-48
MsaG043980	MsaG032472	0.802795	7.960637e-49	1.146798e-46
MsaG044184	MsaG032472	0.827324	2.973717e-54	7.979197e-52
MsaG044354	MsaG032472	0.814253	2.922835e-51	5.544931e-49
MsaG044384	MsaG032472	0.813451	4.381688e-51	8.147088e-49
MsaG045021	MsaG032472	0.831665	2.649318e-55	8.044864e-53
MsaG045125	MsaG032472	0.823445	2.437602e-53	5.877638e-51
MsaG045278	MsaG032472	0.804869	2.965602e-49	4.482476e-47
MsaG045339	MsaG032472	0.835472	3.000050e-56	1.019231e-53
MsaG045373	MsaG032472	0.801195	1.690938e-48	2.348752e-46
MsaG045380	MsaG032472	0.829255	1.022878e-54	2.897485e-52
MsaG045376	MsaG032472	0.827636	2.504634e-54	6.779644e-52
MsaG045445	MsaG032472	0.807887	6.903523e-50	1.120427e-47
MsaG045446	MsaG032472	0.826244	5.368526e-54	1.397767e-51
MsaG046051	MsaG032472	0.806063	1.671364e-49	2.597604e-47
MsaG046053	MsaG032472	0.820056	1.469589e-52	3.237030e-50
MsaG046205	MsaG032472	0.800110	2.808410e-48	3.806558e-46
MsaG046423	MsaG032472	0.836471	1.679145e-56	5.878358e-54
MsaG046383	MsaG032472	0.827612	2.538138e-54	6.865725e-52
MsaG046588	MsaG032472	0.806762	1.192038e-49	1.883558e-47
MsaG046630	MsaG032472	0.821809	5.831913e-53	1.345538e-50
MsaG046816	MsaG032472	0.843542	2.452831e-58	1.071729e-55
MsaG046862	MsaG032472	0.802215	1.046898e-48	1.488251e-46
MsaG047054	MsaG032472	0.821584	6.568774e-53	1.506520e-50
MsaG005390	MsaG032472	0.828497	1.557484e-54	4.319105e-52
MsaG007590	MsaG032472	0.823021	3.058056e-53	7.289758e-51
MsaG008770	MsaG032472	0.830515	5.060578e-55	1.486231e-52
MsaG008796	MsaG032472	0.804449	3.625309e-49	5.426352e-47
MsaG010026	MsaG032472	0.810083	2.350575e-50	4.022195e-48
MsaG009037	MsaG032472	0.808269	5.728758e-50	9.383355e-48
MsaG013401	MsaG032472	0.801666	1.355847e-48	1.903541e-46
MsaG014180	MsaG032472	0.806337	1.464352e-49	2.290750e-47
MsaG015534	MsaG032472	0.801311	1.601549e-48	2.230439e-46
MsaG014275	MsaG032472	0.802311	1.000744e-48	1.425819e-46
MsaG012091	MsaG032472	0.810618	1.803893e-50	3.127347e-48
MsaG021169	MsaG032472	0.828006	2.042950e-54	5.587587e-52
MsaG027786	MsaG032472	0.805468	2.225081e-49	3.410191e-47
MsaG032410	MsaG032472	0.822953	3.171249e-53	7.545653e-51
MsaG033574	MsaG032472	0.802281	1.015077e-48	1.445213e-46
MsaG031221	MsaG032472	0.813618	4.029042e-51	7.522584e-49
MsaG031766	MsaG032472	0.840057	2.020262e-57	7.900841e-55
MsaG032472	MsaG032092	0.802671	8.441056e-49	1.212600e-46
MsaG032472	MsaG032980	0.802397	9.606937e-49	1.371488e-46
MsaG032472	MsaG032243	0.808377	5.434388e-50	8.924134e-48
MsaG032472	MsaG033148	0.809938	2.524784e-50	4.305114e-48
MsaG032472	MsaG037271	0.805435	2.260603e-49	3.461978e-47
MsaG032472	MsaG038765	0.811136	1.395290e-50	2.449739e-48
MsaG032472	MsaG037384	0.830944	3.977764e-55	1.182710e-52
MsaG032472	MsaG036054	0.805033	2.741433e-49	4.159542e-47
MsaG032472	MsaG035090	0.806265	1.515656e-49	2.367046e-47
MsaG032472	MsaG035677	0.800319	2.547620e-48	3.469364e-46
MsaG032472	MsaG037786	0.808397	5.380977e-50	8.840638e-48
MsaG032472	MsaG036984	0.832366	1.781538e-55	5.520639e-53
MsaG032472	MsaG043312	0.822832	3.383246e-53	8.023750e-51
MsaG013644	MsaG032472	0.812076	8.734718e-51	1.569315e-48
MsaG013993	MsaG032472	0.801921	1.202376e-48	1.697905e-46
MsaG014184	MsaG032472	0.816684	8.461566e-52	1.707222e-49
MsaG014439	MsaG032472	0.802104	1.103057e-48	1.564106e-46
MsaG014953	MsaG032472	0.828077	1.964444e-54	5.383509e-52
MsaG014920	MsaG032472	0.814098	3.161851e-51	5.974980e-49
MsaG015173	MsaG032472	0.800595	2.239583e-48	3.069079e-46
MsaG015176	MsaG032472	0.811662	1.074009e-50	1.910123e-48
MsaG015267	MsaG032472	0.822050	5.129565e-53	1.191178e-50
MsaG015269	MsaG032472	0.817629	5.199750e-52	1.074929e-49
MsaG015705	MsaG032472	0.800656	2.176971e-48	2.987411e-46
MsaG016006	MsaG032472	0.801655	1.362597e-48	1.912545e-46
MsaG016149	MsaG032472	0.812127	8.513893e-51	1.531583e-48
MsaG016724	MsaG032472	0.813344	4.623677e-51	8.573804e-49
MsaG016685	MsaG032472	0.835253	3.406049e-56	1.149538e-53
MsaG017058	MsaG032472	0.801663	1.357443e-48	1.905673e-46
MsaG017312	MsaG032472	0.800251	2.629406e-48	3.575259e-46
MsaG017209	MsaG032472	0.822330	4.420233e-53	1.034242e-50
MsaG017337	MsaG032472	0.810884	1.581361e-50	2.759340e-48
MsaG018243	MsaG032472	0.838239	5.948048e-57	2.197630e-54
MsaG018447	MsaG032472	0.811610	1.101907e-50	1.957278e-48
MsaG018813	MsaG032472	0.813981	3.354405e-51	6.320355e-49
MsaG020450	MsaG032472	0.818232	3.804565e-52	7.988829e-50
MsaG020540	MsaG032472	0.805146	2.596842e-49	3.950437e-47
MsaG020843	MsaG032472	0.803785	4.975297e-49	7.333363e-47
MsaG020874	MsaG032472	0.840750	1.333622e-57	5.330060e-55
MsaG020875	MsaG032472	0.820871	9.576141e-53	2.155191e-50
MsaG021300	MsaG032472	0.800208	2.682743e-48	3.644197e-46
MsaG021405	MsaG032472	0.806868	1.132325e-49	1.793627e-47
MsaG021575	MsaG032472	0.805798	1.898403e-49	2.932072e-47
MsaG021668	MsaG032472	0.809693	2.849190e-50	4.829651e-48
MsaG021626	MsaG032472	0.804755	3.132032e-49	4.721509e-47
MsaG021765	MsaG032472	0.815989	1.207953e-51	2.394335e-49
MsaG021863	MsaG032472	0.805798	1.898411e-49	2.932083e-47
MsaG021896	MsaG032472	0.859326	8.757440e-63	6.637118e-60
MsaG022059	MsaG032472	0.803163	6.688365e-49	9.717436e-47
MsaG022465	MsaG032472	0.814696	2.335257e-51	4.479684e-49
MsaG023339	MsaG032472	0.809544	3.066387e-50	5.179251e-48
MsaG023578	MsaG032472	0.829237	1.033259e-54	2.925320e-52
MsaG023744	MsaG032472	0.803614	5.398241e-49	7.925065e-47
MsaG023882	MsaG032472	0.818699	2.986115e-52	6.346404e-50
MsaG024239	MsaG032472	0.827022	3.508053e-54	9.333570e-52
MsaG025148	MsaG032472	0.807206	9.614248e-50	1.535072e-47
MsaG025691	MsaG032472	0.823334	2.587323e-53	6.220146e-51
MsaG026714	MsaG032472	0.809680	2.867303e-50	4.858853e-48
MsaG026985	MsaG032472	0.817126	6.740776e-52	1.375680e-49
MsaG028351	MsaG032472	0.818534	3.253758e-52	6.885653e-50
MsaG028456	MsaG032472	0.814069	3.207599e-51	6.057068e-49
MsaG028457	MsaG032472	0.842252	5.385261e-58	2.257494e-55
MsaG028485	MsaG032472	0.836478	1.671526e-56	5.853070e-54
MsaG028489	MsaG032472	0.810373	2.037113e-50	3.510620e-48
MsaG028503	MsaG032472	0.814871	2.136605e-51	4.116844e-49
MsaG028716	MsaG032472	0.810653	1.772834e-50	3.076095e-48
MsaG028811	MsaG032472	0.812991	5.523607e-51	1.015263e-48
MsaG029340	MsaG032472	0.800729	2.103235e-48	2.890996e-46
MsaG029581	MsaG032472	0.806957	1.084746e-49	1.721831e-47
MsaG029899	MsaG032472	0.817685	5.052055e-52	1.045902e-49
MsaG030010	MsaG032472	0.803244	6.435795e-49	9.368050e-47
MsaG030084	MsaG032472	0.825156	9.698185e-54	2.450061e-51
MsaG030501	MsaG032472	0.806003	1.720403e-49	2.669894e-47
MsaG030801	MsaG032472	0.801732	1.314566e-48	1.848346e-46
MsaG030928	MsaG032472	0.832017	2.171133e-55	6.660672e-53
MsaG032431	MsaG032472	0.816826	7.863666e-52	1.592437e-49
MsaG033693	MsaG032472	0.831361	3.145530e-55	9.465979e-53
MsaG033766	MsaG032472	0.809529	3.088148e-50	5.214225e-48
MsaG033983	MsaG032472	0.823702	2.123361e-53	5.156144e-51
MsaG034287	MsaG032472	0.804059	4.367134e-49	6.478232e-47
MsaG035210	MsaG032472	0.819167	2.339232e-52	5.033329e-50
MsaG035270	MsaG032472	0.802013	1.151457e-48	1.629362e-46
MsaG035860	MsaG032472	0.804275	3.939838e-49	5.873612e-47
MsaG036332	MsaG032472	0.807000	1.062108e-49	1.687650e-47
MsaG037861	MsaG032472	0.824899	1.114457e-53	2.795770e-51
MsaG038415	MsaG032472	0.802636	8.582939e-49	1.232005e-46
MsaG038990	MsaG032472	0.826554	4.533040e-54	1.190450e-51
MsaG039159	MsaG032472	0.812736	6.276827e-51	1.146381e-48
MsaG039206	MsaG032472	0.812275	7.909041e-51	1.427987e-48
MsaG039718	MsaG032472	0.800155	2.750078e-48	3.731257e-46
MsaG039723	MsaG032472	0.816916	7.509436e-52	1.524268e-49
MsaG039647	MsaG032472	0.801757	1.299150e-48	1.827714e-46
MsaG039739	MsaG032472	0.814541	2.526617e-51	4.827863e-49
MsaG039934	MsaG032472	0.811276	1.301255e-50	2.292543e-48
MsaG040077	MsaG032472	0.823435	2.450788e-53	5.907806e-51
MsaG040384	MsaG032472	0.811705	1.050978e-50	1.871183e-48
MsaG040800	MsaG032472	0.803388	6.011176e-49	8.779106e-47
MsaG040985	MsaG032472	0.825781	6.907222e-54	1.775423e-51
MsaG041336	MsaG032472	0.813454	4.376622e-51	8.138089e-49
MsaG041513	MsaG032472	0.824918	1.103028e-53	2.768540e-51
MsaG041515	MsaG032472	0.812529	6.965495e-51	1.265647e-48
MsaG041685	MsaG032472	0.802093	1.108676e-48	1.571706e-46
MsaG041686	MsaG032472	0.820086	1.446945e-52	3.189680e-50
MsaG041687	MsaG032472	0.803655	5.293211e-49	7.778479e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032472	MtrunA17_Chr8g0343441	72.340	47	13	0	13	59	198	244	4.37e-19	77.0
MsaG032472	MtrunA17_Chr2g0329821	68.085	47	15	0	13	59	193	239	7.20e-18	73.9
MsaG032472	MtrunA17_Chr1g0150821	72.093	43	12	0	17	59	210	252	2.93e-17	72.4
MsaG032472	MtrunA17_Chr4g0076771	65.909	44	15	0	16	59	201	244	9.21e-17	70.9
MsaG032472	MtrunA17_Chr7g0242511	65.116	43	15	0	17	59	189	231	2.35e-16	69.7
MsaG032472	MtrunA17_Chr4g0006381	65.116	43	15	0	17	59	189	231	3.05e-16	69.3
MsaG032472	MtrunA17_Chr2g0300241	62.500	48	16	1	14	59	195	242	6.16e-15	65.9

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032472	AT5G20510.2	65.957	47	16	13	59	162	208	1.34e-17	72.8
MsaG032472	AT5G20510.1	65.957	47	16	13	59	203	249	2.47e-17	72.8
MsaG032472	AT5G26210.1	68.889	45	14	15	59	200	244	6.06e-17	71.6
MsaG032472	AT3G42790.1	65.957	47	16	13	59	193	239	6.67e-17	71.6
MsaG032472	AT5G05610.2	59.574	47	19	13	59	184	230	3.04e-16	69.7
MsaG032472	AT5G05610.1	59.574	47	19	13	59	184	230	3.04e-16	69.7
MsaG032472	AT2G02470.1	67.442	43	14	17	59	203	245	6.44e-16	68.9
MsaG032472	AT2G02470.2	67.442	43	14	17	59	194	236	7.31e-16	68.9
MsaG032472	AT1G14510.1	67.442	43	14	17	59	198	240	1.51e-15	68.2
MsaG032472	AT3G11200.2	57.447	47	20	13	59	176	222	1.92e-15	67.4
MsaG032472	AT3G11200.1	57.447	47	20	13	59	189	235	3.52e-15	67.0

Find 16 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCGAAAATCCAGAATTTATC+AGG	0.249988	6:+53284160	None:intergenic
CTCTTGTTGTTATTGCATGA+TGG	0.451557	6:+53284057	None:intergenic
TCGATATGCTTAGCCCTAGC+AGG	0.457819	6:+53284091	None:intergenic
AATATGACCCTGATAAATTC+TGG	0.489252	6:-53284168	MsaT032472.1:CDS
GTGTGAATATCACCCCTGCT+AGG	0.500091	6:-53284105	MsaT032472.1:CDS
GAGGAAGATGAAGATGAAGA+CGG	0.529823	6:-53284220	MsaT032472.1:CDS
TCGGTGACATTTGTGAGAGG+TGG	0.533723	6:-53284141	MsaT032472.1:CDS
TTTGTGAGAGGTGGTTCCAT+GGG	0.542875	6:-53284132	MsaT032472.1:CDS
TGTGAATATCACCCCTGCTA+GGG	0.567860	6:-53284104	MsaT032472.1:CDS
TGATATTCACACATTTCCCA+TGG	0.578749	6:+53284116	None:intergenic
CGATATGCTTAGCCCTAGCA+GGG	0.578888	6:+53284092	None:intergenic
ATTTGTGAGAGGTGGTTCCA+TGG	0.579292	6:-53284133	MsaT032472.1:CDS
GAGAACTCATGCGGTGCATG+CGG	0.601432	6:-53284196	MsaT032472.1:CDS
CGAAAATCCAGAATTTATCA+GGG	0.613625	6:+53284161	None:intergenic
GAAGACGGAGAGAACTCATG+CGG	0.708786	6:-53284205	MsaT032472.1:CDS
GATATGCTTAGCCCTAGCAG+GGG	0.740274	6:+53284093	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	53284066	53284257	53284066	ID=MsaG032472
Chr6	mRNA	53284066	53284257	53284066	ID=MsaT032472.1;Parent=MsaG032472
Chr6	exon	53284066	53284257	53284066	ID=MsaT032472.1.exon1;Parent=MsaT032472.1
Chr6	CDS	53284066	53284257	53284066	ID=cds.MsaT032472.1;Parent=MsaT032472.1

Gene Sequence	>MsaT032472.1 ATGGAAGAACTTTTTGAGGAAGATGAAGATGAAGACGGAGAGAACTCATGCGGTGCATGCGGTGAGCAATATGACCCTGATAAATTCTGGATTTTCGGTGACATTTGTGAGAGGTGGTTCCATGGGAAATGTGTGAATATCACCCCTGCTAGGGCTAAGCATATCGATATATACAAGTCCATCATGCAATAA
Protein sequence	>MsaT032472.1 MEELFEEDEDEDGENSCGACGEQYDPDKFWIFGDICERWFHGKCVNITPARAKHIDIYKSIMQ*