AlfalfaGEDB | MsaG032511

M. sativa ssp. caerulea / MsaG032511

KEGG: K11420
GO: GO:0000228 GO:0000775 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0009292 GO:0009294 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019222 GO:0019538 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0034641 GO:0036211 GO:0040029 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0044764 GO:0046483 GO:0048519 GO:0050789 GO:0051276 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080188 GO:0090304 GO:0098687 GO:0140096 GO:1901360 GO:1901564
PFAM: PF02182.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032511	XP_039682893.1	91.288	528	45	1	2	528	38	565	0.0	974

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032511	sp\|Q9T0G7\|SUVH9_ARATH	49.545	549	235	12	7	537	126	650	1.37e-174	510

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032511	tr\|A0A396HFL4\|A0A396HFL4_MEDTR	91.288	528	45	1	2	528	38	565	0.0	974

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TFs/TRs:

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Gene ID	Type	Classification
MsaG032511	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000045	MsaG032511	0.838188	6.129846e-57	2.261279e-54
MsaG000292	MsaG032511	0.811220	1.338306e-50	2.354543e-48
MsaG000467	MsaG032511	0.801160	1.719543e-48	2.386539e-46
MsaG000686	MsaG032511	0.814281	2.881711e-51	5.470797e-49
MsaG000884	MsaG032511	0.800755	2.077959e-48	2.857907e-46
MsaG000961	MsaG032511	0.824608	1.304495e-53	3.246411e-51
MsaG001021	MsaG032511	0.813502	4.271733e-51	7.952514e-49
MsaG001022	MsaG032511	0.812400	7.429454e-51	1.345622e-48
MsaG001132	MsaG032511	0.812922	5.717145e-51	1.049035e-48
MsaG001181	MsaG032511	0.824497	1.384729e-53	3.435824e-51

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG032511	MtrunA17_Chr6g0467421	91.288	528	45	1	2	528	38	565	974
MsaG032511	MtrunA17_Chr6g0467531	91.477	528	44	1	2	528	38	565	972
MsaG032511	MtrunA17_Chr6g0467381	90.909	528	47	1	2	528	38	565	968
MsaG032511	MtrunA17_Chr6g0467401	90.530	528	49	1	2	528	38	565	962
MsaG032511	MtrunA17_Chr6g0467411	84.095	503	60	1	26	528	1	483	864
MsaG032511	MtrunA17_Chr3g0094881	74.723	542	128	3	2	537	101	639	823
MsaG032511	MtrunA17_Chr2g0306961	78.752	513	60	3	16	528	1	464	807
MsaG032511	MtrunA17_Chr1g0163051	61.060	547	171	10	7	537	139	659	644
MsaG032511	MtrunA17_Chr8g0368901	52.000	600	215	11	1	535	176	767	592
MsaG032511	MtrunA17_Chr8g0368911	50.960	573	217	12	19	535	196	760	562

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032511	AT4G13460.1	49.545	549	235	12	7	537	126	650	1.40e-175	510
MsaG032511	AT4G13460.2	49.545	549	235	12	7	537	126	650	1.40e-175	510
MsaG032511	AT2G33290.1	49.081	544	238	12	9	537	132	651	9.59e-172	500
MsaG032511	AT2G33290.3	49.081	544	238	12	9	537	132	651	9.59e-172	500
MsaG032511	AT2G33290.4	49.081	544	238	12	9	537	132	651	9.59e-172	500
MsaG032511	AT2G33290.2	49.081	544	238	12	9	537	132	651	9.59e-172	500
MsaG032511	AT5G04940.2	34.906	530	275	15	24	527	155	640	1.60e-85	278
MsaG032511	AT5G04940.1	34.906	530	275	15	24	527	155	640	1.60e-85	278
MsaG032511	AT2G22740.2	33.459	529	286	11	24	525	270	759	2.61e-84	278
MsaG032511	AT2G22740.1	33.459	529	286	11	24	525	270	759	2.61e-84	278

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Find 115 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTATTAAATATAGGT+TGG	0.507633	6:-54341750	MsaT032511.1:CDS
AAAATCATTGGTCCAGTTCC+TGG	0.372423	6:-54342601	MsaT032511.1:CDS
AAAATTATCTACTCTGGCCA+TGG	0.625235	6:-54342406	MsaT032511.1:CDS
AAATAATCAATCCCAGCTTG+TGG	0.645273	6:+54342514	None:intergenic
AAATCTAAAGGAGGATATGC+AGG	0.504198	6:+54341500	None:intergenic
AAATCTATGCAGAAGCTTAG+AGG	0.379307	6:-54342886	None:intergenic
AATAGGTCCACTCAAGAATG+GGG	0.681347	6:-54341557	MsaT032511.1:CDS
AATCTATGCAGAAGCTTAGA+GGG	0.534148	6:-54342885	None:intergenic
AATGGGTAGTATGATCCTTA+AGG	0.441204	6:-54342146	MsaT032511.1:CDS
ACAACCACACTAGTAGCAAT+GGG	0.558434	6:+54342463	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	54341289	54342902	54341289	ID=MsaG032511
Chr6	mRNA	54341289	54342902	54341289	ID=MsaT032511.1;Parent=MsaG032511
Chr6	exon	54341289	54342902	54341289	ID=MsaT032511.1.exon1;Parent=MsaT032511.1
Chr6	CDS	54341289	54342902	54341289	ID=cds.MsaT032511.1;Parent=MsaT032511.1

Gene Sequence

>MsaT032511.1

ATGCAGAAGCTTAGAGGGCAGAACAAGGAGCTTGTTCGCACTGCGATGGATGCAGATCACCGTCCGTATCGTGAGATGGTCCGGAGAACAAGAATATTGTTTGATTCTATTCGTGTGTCAGGTTTGCTGGAAGAAGAGAATAATCGTAAGAACAAAAGGTATTTGAAAGCTTATTCTTTGTTGAACCAGACAGAAGAAGTGAATAACAGTAGGGTCCGAAATGACTTGATAGCTGCTGCTTTGATGAATGATCATGGTATGTATTTGTATCTTGATAAGAAAATCATTGGTCCAGTTCCTGGTGTTTGTATTGGTGATATTTTTCTCTATAGAAGTGAAATGTGTGTGATTGGTTTACACGGTCAACCACAAGCTGGGATTGATTATTTACATGCTAGTATGAGTTCTAATGGCCTACCCATTGCTACTAGTGTGGTTGTGTCTGATGGATATAATGATGATGATCAAGGAGACAAAATTATCTACTCTGGCCATGGTGATGTGAAGCAGGACCAGAAGTTGGAACGAGGCAACCTTGCTATGGTGACAAGTATGCAATATGAGATTGATGTTAGGGTTATTCGAGGTTTTCGGTATGAAGGTGGTACTTCTACTACTAGTAAGGTTTTTGTTTATGATGGCTTGTATAAGATAATTGAATGTTGGTTTGAAAAAGGTATATCTGGGTTTGGTGTTTATAAGTTTATGTTATCTAGGGTTCAAGGTCAACCTAAAATGGGTAGTATGATCCTTAAGGAAGCAAGTATGCTTAAGAGAGGCCAATTATGTTCTAATCCTATGTATGTCATTTCTGATGATATTTCCAATGGGAAGGAGAATATCGGTGTGAGACTATATAATGACATTGACAGTGATCGCTATCCCATGCAATTTGAGTATCTTCCGAAGGCAGCTTTTCCAAAATTCTTGCTTCCTCAGAGCATGATGGAGAGGAAAAATAAGAGGGTGTTGGAGTGTTGTGAATGCGTTGATGGATGTTTTCCTTTGATCATGAATGACAACACTTTACCTTATAGTAAAAGTGGGTTTCTTTTAAAAGGGAGGTCATTAATTTATGAATGTGGTCCTTTTTGTAGTTGTCCTTCGCATTGCAGAAACCGTGTGACACAAAAAGGTATTAAATATAGGTTGGAAGTGTTTAGATCTAATGAGACTAGTTGGGGAGTTAGGTCTTTGGACCCTATTTTAGCTGGAACTTTTATATGTGAGTTCACCGGGCTTGTTTTGACTAGAGAGCAAGCGGAAATTTTAACCATGGATGGTGAACATAACTCTTCGATGATATATCCAAATCGACTTTTGAATAGGTCCACTCAAGAATGGGGTGATTTGTCGATGATTGATGCTAATCATGTGCATCCTGCATATCCTCCTTTAGATTTTGCATTGGATGTATCAACGATGAGGAATGTTGCCAGCTATATTAGTCATAGCCCAACTCCAAATGTGTTTGTTCAATTAGTTCTCTATGATCATGGTAATTGGATGTTTCCCCATCTTATGTTATTTGCAATGGAGAACATCCCTCCAATGAGAGAGCTTAGTCTTGATCATGGGGTAGAATTCACTGGAAAGCTCTCGATACGTAATTGA

Protein sequence

>MsaT032511.1

MQKLRGQNKELVRTAMDADHRPYREMVRRTRILFDSIRVSGLLEEENNRKNKRYLKAYSLLNQTEEVNNSRVRNDLIAAALMNDHGMYLYLDKKIIGPVPGVCIGDIFLYRSEMCVIGLHGQPQAGIDYLHASMSSNGLPIATSVVVSDGYNDDDQGDKIIYSGHGDVKQDQKLERGNLAMVTSMQYEIDVRVIRGFRYEGGTSTTSKVFVYDGLYKIIECWFEKGISGFGVYKFMLSRVQGQPKMGSMILKEASMLKRGQLCSNPMYVISDDISNGKENIGVRLYNDIDSDRYPMQFEYLPKAAFPKFLLPQSMMERKNKRVLECCECVDGCFPLIMNDNTLPYSKSGFLLKGRSLIYECGPFCSCPSHCRNRVTQKGIKYRLEVFRSNETSWGVRSLDPILAGTFICEFTGLVLTREQAEILTMDGEHNSSMIYPNRLLNRSTQEWGDLSMIDANHVHPAYPPLDFALDVSTMRNVASYISHSPTPNVFVQLVLYDHGNWMFPHLMLFAMENIPPMRELSLDHGVEFTGKLSIRN*