AlfalfaGEDB | MsaG032592

M. sativa ssp. caerulea / MsaG032592

KEGG: -
GO: -
PFAM: PF13947.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032592	XP_003619220.3	84.909	603	57	4	1	579	1	593	0.0	1041

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032592	sp\|P0C5E2\|LRL12_ARATH	44.667	600	278	21	9	578	8	583	3.01e-143	432

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032592	tr\|A0A396HDF1\|A0A396HDF1_MEDTR	84.909	603	57	4	1	579	1	593	0.0	1041

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032592	MtrunA17_Chr6g0467631	84.909	603	57	4	1	579	1	593	0.0	1041
MsaG032592	MtrunA17_Chr6g0483931	64.715	615	178	10	1	579	1	612	0.0	767
MsaG032592	MtrunA17_Chr6g0467601	77.834	397	70	4	201	579	1	397	0.0	610
MsaG032592	MtrunA17_Chr8g0376061	50.000	574	240	16	35	579	24	579	1.44e-160	474
MsaG032592	MtrunA17_Chr6g0483821	46.831	568	255	18	1	530	1	559	9.01e-140	420
MsaG032592	MtrunA17_Chr6g0484051	45.810	537	252	18	21	530	24	548	1.25e-137	414
MsaG032592	MtrunA17_Chr1g0209361	44.542	568	250	19	49	579	47	586	5.09e-127	388
MsaG032592	MtrunA17_Chr7g0251121	70.769	260	76	0	320	579	351	610	1.46e-121	374
MsaG032592	MtrunA17_Chr1g0209391	51.475	373	147	6	213	578	197	542	2.06e-118	365
MsaG032592	MtrunA17_Chr1g0209431	66.667	261	87	0	319	579	321	581	2.61e-116	360

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032592	AT1G18390.2	44.408	608	271	22	9	578	8	586	4.04e-143	429
MsaG032592	AT1G18390.1	44.013	593	268	19	20	578	18	580	8.62e-143	428
MsaG032592	AT1G66880.3	43.322	584	259	10	45	582	35	592	5.27e-138	417
MsaG032592	AT5G38210.1	42.764	615	270	16	16	579	18	601	1.61e-137	416
MsaG032592	AT5G38210.3	42.710	583	273	14	47	579	24	595	1.73e-129	395
MsaG032592	AT5G38210.2	42.710	583	273	14	47	579	42	613	2.71e-129	395
MsaG032592	AT1G66880.2	68.657	268	82	1	315	582	569	834	1.32e-116	368
MsaG032592	AT1G66880.2	30.769	195	121	8	45	238	35	216	9.65e-16	81.3
MsaG032592	AT1G25390.1	40.288	556	273	17	38	579	25	535	5.47e-114	353
MsaG032592	AT1G25390.2	40.288	556	273	17	38	579	25	535	5.47e-114	353

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Find 99 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGTCTACAGCTT+TGG	0.356889	6:-56616267	MsaT032592.1:CDS
AAACATATCAAAGTGCCCGT+AGG	0.680170	6:-56620981	MsaT032592.1:CDS
AAAGTGATGTCTACAGCTTT+GGG	0.368808	6:-56616266	MsaT032592.1:CDS
AAATAAGTATCATTAAATTG+AGG	0.577106	6:+56621185	None:intergenic
AACAGCTCCACTAGGAACTG+CGG	0.616290	6:-56616334	MsaT032592.1:CDS
AACTAATTCTTGCAGTGGGA+TGG	0.505000	6:-56617415	MsaT032592.1:intron
AACTACTTTGATCCATCCAA+AGG	0.616109	6:-56617109	MsaT032592.1:CDS
AAGAGGGGAAGTAAACACTT+TGG	0.581173	6:-56617190	MsaT032592.1:CDS
AAGTGATGTCTACAGCTTTG+GGG	0.661743	6:-56616265	MsaT032592.1:CDS
AAGTGCGGAAAGACTAAGAG+GGG	0.677443	6:-56617205	MsaT032592.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	56616077	56621561	56616077	ID=MsaG032592
Chr6	mRNA	56616077	56621561	56616077	ID=MsaT032592.1;Parent=MsaG032592
Chr6	exon	56616077	56616777	56616077	ID=MsaT032592.1.exon4;Parent=MsaT032592.1
Chr6	CDS	56616077	56616777	56616077	ID=cds.MsaT032592.1;Parent=MsaT032592.1
Chr6	exon	56617074	56617283	56617074	ID=MsaT032592.1.exon3;Parent=MsaT032592.1
Chr6	CDS	56617074	56617283	56617074	ID=cds.MsaT032592.1;Parent=MsaT032592.1
Chr6	exon	56617390	56617422	56617390	ID=MsaT032592.1.exon2;Parent=MsaT032592.1
Chr6	CDS	56617390	56617422	56617390	ID=cds.MsaT032592.1;Parent=MsaT032592.1
Chr6	exon	56620748	56621561	56620748	ID=MsaT032592.1.exon1;Parent=MsaT032592.1
Chr6	CDS	56620748	56621561	56620748	ID=cds.MsaT032592.1;Parent=MsaT032592.1

Gene Sequence

>MsaT032592.1

ATGGATAATCATATTCCTATTCTTCTCATAATTACACATATCTCTTTCTTCTTCTTAATAACCACTTGCCACTCTCAACCACAACAACAACCTCAACCTGTTCACAATTTTTCAAGTTGTAAAGACATCATGAGCTCTTACAACTGTGGAAATATTTCCAACATCTCTTATCCATTTTGGGGACAAAATCGTCCTTTTCAATGCGGGGCTGGTAACCCTTTTTACCTTAACTGCCACAACAGCAACACCACCACCATTATCTTATACTCACAAAATTTCACAGTACTTGATATAAACAGAAAAGACCACATCATCAAACTCAAAAGAACAGACCTTGATCAAAATCTATGTTCTCCTCAATTTAATGATACTTATTTGTTATCACCTTTATTTCAATATCCCCAAAATGTTAAAAACATCTCCATATACTACAATTGTACTTCCACTATCTCTCAAGATTTAGCAGAAAATTCTCTGTGTGGATCTCACTATCCTTCTTTCGGCTATGTCGGAAATGAAGATAAGCTGTTTGAAGAAGATCCATCTCTGAAATGTCAGAAACATATCAAAGTGCCCGTAGGATCATATTTTCCTCTAGAGGTGGATTATTTTGATCGTGGTAAACTTGAAAGAGTATTAAATGATGGTTTTGAGGTGAAGTATAATGTGAATGAAGAATGTTTAAGATGTTTTGGAAGTGAAGGAGGCGATTGTTTGAGCGATTCTATTGATAATCATGTTGGGTTATGCTATTATGATAATTTAACTGATGCATCTATTGCTTCATCCACAGGTCTTTCTTCTGATGACAAAATGGGATGGAATTGGAAGAGGAAACTCATTATTGGTGTTGGTTCTGCTATGCTAGGAACATTTGCAGTGGTCGGTTTCTTGTATTTCTGTAAGTGCGGAAAGACTAAGAGGGGAAGTAAACACTTTGGACGAGGTCAAAACATTGGAGTTCAACTTTTCACTTACAGTGAGCTTGAAGAAGCCACAAACTACTTTGATCCATCCAAAGGACTAGGAAAAGGGGGCTTTGGAACAGTGTATTTTGGCAAATTGAAAGATGGGCGTAGTGTTGCTGTGAAGAGGTTACATGAGAACAGTTATAAAAGAGTTCGGCAATTCTTGAATGAAGTTGAAATCTTAGCTAGATTAGTCCACCCAAATCTTGTGTCGCTATATGGATGCACTTCATGCCACAGCCGCGAACTTTTGCTTGCATACGAGTACATTTCTAATGGAACTGTAGCTGATCATCTTCATGGTAATCAAGCAAAACACGGGAAACTTTCTTGGCATATAAGAATGAACATTGCTGTGGAGACAGCAAGTGCATTGAGATATCTTCATATTTCCGACATCATTCACAGAGATATAAAAACCGATAATATTCTTCTTGACACCAATTTTTGTGTCAAAGTAGCAGATTTTGGACTCTCACGCCTTTTTCCAATTGATCATAGTCATGTTTCAACAGCTCCACTAGGAACTGCGGGTTATGTAGATCCCGAGTACAATCTGTTCTATCAGCTTACTCATAAAAGTGATGTCTACAGCTTTGGGGTAGTGATGATTGAGCTTATATCATCTTTGCCTGCGGTTGATATGACAAGGCCTAGGGATGATATCAATCTGTCCACCATGGCTATGAACAAAATTCTAAATCAAGGTTTGCATGAACTCGTGGATCCTACCCTCGGTTATGACTCAGATTCCAAGGTAAAGGAAATGAAAATGACGTGGCTGAGTTAG

Protein sequence

>MsaT032592.1

MDNHIPILLIITHISFFFLITTCHSQPQQQPQPVHNFSSCKDIMSSYNCGNISNISYPFWGQNRPFQCGAGNPFYLNCHNSNTTTIILYSQNFTVLDINRKDHIIKLKRTDLDQNLCSPQFNDTYLLSPLFQYPQNVKNISIYYNCTSTISQDLAENSLCGSHYPSFGYVGNEDKLFEEDPSLKCQKHIKVPVGSYFPLEVDYFDRGKLERVLNDGFEVKYNVNEECLRCFGSEGGDCLSDSIDNHVGLCYYDNLTDASIASSTGLSSDDKMGWNWKRKLIIGVGSAMLGTFAVVGFLYFCKCGKTKRGSKHFGRGQNIGVQLFTYSELEEATNYFDPSKGLGKGGFGTVYFGKLKDGRSVAVKRLHENSYKRVRQFLNEVEILARLVHPNLVSLYGCTSCHSRELLLAYEYISNGTVADHLHGNQAKHGKLSWHIRMNIAVETASALRYLHISDIIHRDIKTDNILLDTNFCVKVADFGLSRLFPIDHSHVSTAPLGTAGYVDPEYNLFYQLTHKSDVYSFGVVMIELISSLPAVDMTRPRDDINLSTMAMNKILNQGLHELVDPTLGYDSDSKVKEMKMTWLS*