AlfalfaGEDB | MsaG032635

M. sativa ssp. caerulea / MsaG032635

KEGG: K14777
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03514.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032635	XP_013452181.1	97.015	469	14	0	1	469	194	662	0.0	938

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032635	sp\|Q9FYR7\|SCL8_ARATH	53.112	482	181	12	9	469	183	640	5.37e-142	424

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032635	tr\|A0A072U8U5\|A0A072U8U5_MEDTR	97.015	469	14	0	1	469	194	662	0.0	938

TFs/TRs:

Gene ID	Type	Classification
MsaG032635	TF	GRAS

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000609	MsaG032635	0.831561	2.809420e-55	8.504538e-53
MsaG003555	MsaG032635	0.854891	1.757493e-61	1.130977e-58
MsaG003648	MsaG032635	0.840098	1.970972e-57	7.717955e-55
MsaG005210	MsaG032635	0.802404	9.575238e-49	1.367175e-46
MsaG005423	MsaG032635	0.804148	4.186260e-49	6.222536e-47
MsaG005452	MsaG032635	0.814921	2.083031e-51	4.018621e-49
MsaG005603	MsaG032635	0.825927	6.379654e-54	1.646568e-51
MsaG006025	MsaG032635	0.802160	1.074341e-48	1.525347e-46
MsaG006255	MsaG032635	0.801805	1.269934e-48	1.788580e-46
MsaG006335	MsaG032635	0.810370	2.039240e-50	3.514091e-48
MsaG007040	MsaG032635	0.836763	1.415755e-56	4.999989e-54
MsaG008198	MsaG032635	0.822457	4.131405e-53	9.699248e-51
MsaG008407	MsaG032635	0.816141	1.117910e-51	2.224489e-49
MsaG011070	MsaG032635	0.830712	4.532269e-55	1.338562e-52
MsaG011366	MsaG032635	0.800341	2.521569e-48	3.435620e-46
MsaG012568	MsaG032635	0.804886	2.942446e-49	4.449145e-47
MsaG016648	MsaG032635	0.800316	2.551805e-48	3.474807e-46
MsaG017324	MsaG032635	0.803702	5.176555e-49	7.615358e-47
MsaG017620	MsaG032635	0.802960	7.362597e-49	1.064690e-46
MsaG017778	MsaG032635	0.801069	1.794258e-48	2.485100e-46
MsaG017840	MsaG032635	0.833559	9.026636e-56	2.896687e-53
MsaG018044	MsaG032635	0.828296	1.740491e-54	4.799150e-52
MsaG018489	MsaG032635	0.808892	4.222263e-50	7.020488e-48
MsaG018770	MsaG032635	0.822718	3.594652e-53	8.498983e-51
MsaG019526	MsaG032635	0.853002	6.119163e-61	3.682186e-58
MsaG019564	MsaG032635	0.816472	9.435319e-52	1.893306e-49
MsaG019910	MsaG032635	0.817847	4.644015e-52	9.654949e-50
MsaG019985	MsaG032635	0.801418	1.523297e-48	2.126626e-46
MsaG020371	MsaG032635	0.811912	9.478994e-51	1.696310e-48
MsaG020415	MsaG032635	0.816588	8.888821e-52	1.789024e-49
MsaG022486	MsaG032635	0.800837	2.000289e-48	2.756066e-46
MsaG023243	MsaG032635	0.805528	2.162478e-49	3.318789e-47
MsaG023275	MsaG032635	0.810324	2.086147e-50	3.590877e-48
MsaG023563	MsaG032635	0.864892	1.750099e-64	1.646318e-61
MsaG024037	MsaG032635	0.842563	4.459756e-58	1.888397e-55
MsaG024114	MsaG032635	0.840410	1.635514e-57	6.467401e-55
MsaG026478	MsaG032635	0.816008	1.196572e-51	2.372866e-49
MsaG027750	MsaG032635	0.828484	1.568823e-54	4.348965e-52
MsaG028852	MsaG032635	0.825635	7.479685e-54	1.914647e-51
MsaG029473	MsaG032635	0.825522	7.950555e-54	2.029011e-51
MsaG032221	MsaG032635	0.811857	9.742440e-51	1.741066e-48
MsaG032635	MsaG034337	0.821358	7.403451e-53	1.687825e-50
MsaG032635	MsaG042054	0.833470	9.500249e-56	3.040704e-53
MsaG032635	MsaG043784	0.841635	7.825251e-58	3.216425e-55
MsaG032635	MsaG044661	0.820492	1.168973e-52	2.604661e-50
MsaG032635	MsaG045238	0.824843	1.148903e-53	2.877660e-51
MsaG032635	MsaG045239	0.810967	1.517412e-50	2.653128e-48
MsaG032635	MsaG047187	0.814840	2.169981e-51	4.177893e-49
MsaG032635	MsaG002242	0.805446	2.249136e-49	3.445294e-47
MsaG032635	MsaG023179	0.817343	6.027077e-52	1.236872e-49
MsaG032635	MsaG026803	0.801639	1.373088e-48	1.926563e-46
MsaG032635	MsaG027575	0.825660	7.376574e-54	1.889633e-51
MsaG032635	MsaG036260	0.808034	6.424872e-50	1.046431e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032635	MtrunA17_Chr6g0468561	97.015	469	14	0	1	469	194	662	0.0	938
MsaG032635	MtrunA17_Chr7g0236851	52.575	466	188	9	16	468	211	656	1.48e-151	446
MsaG032635	MtrunA17_Chr3g0125811	36.117	479	248	14	20	469	121	570	1.51e-81	263
MsaG032635	MtrunA17_Chr1g0159461	39.386	391	195	10	100	469	223	592	4.71e-77	251
MsaG032635	MtrunA17_Chr2g0319091	34.362	486	261	15	17	469	119	579	1.24e-66	224
MsaG032635	MtrunA17_Chr5g0447691	34.596	396	207	13	100	469	175	544	5.00e-62	211
MsaG032635	MtrunA17_Chr3g0101141	35.309	388	215	11	100	469	173	542	5.50e-61	208
MsaG032635	MtrunA17_Chr2g0290241	31.043	393	226	9	100	469	55	425	1.52e-57	196
MsaG032635	MtrunA17_Chr4g0076091	32.216	388	226	9	100	468	173	542	2.88e-56	195
MsaG032635	MtrunA17_Chr5g0445331	34.015	391	220	11	100	469	159	532	1.06e-55	194
MsaG032635	MtrunA17_Chr4g0037781	52.850	193	77	4	42	229	2	185	4.14e-50	169
MsaG032635	MtrunA17_Chr8g0376381	28.836	378	237	8	101	469	168	522	1.63e-36	141
MsaG032635	MtrunA17_Chr3g0110971	29.668	391	232	12	101	469	218	587	3.40e-36	141
MsaG032635	MtrunA17_Chr2g0306641	27.407	405	251	10	84	469	107	487	1.33e-35	138
MsaG032635	MtrunA17_Chr8g0357601	30.412	388	235	13	101	469	181	552	1.03e-34	136
MsaG032635	MtrunA17_Chr7g0224271	29.136	405	217	13	103	469	301	673	3.72e-34	135
MsaG032635	MtrunA17_Chr4g0057891	29.847	392	233	15	101	469	148	520	7.02e-31	125
MsaG032635	MtrunA17_Chr4g0031711	25.000	384	263	8	100	468	359	732	7.17e-31	126
MsaG032635	MtrunA17_Chr2g0328391	26.178	382	253	12	103	468	300	668	1.68e-30	125
MsaG032635	MtrunA17_Chr4g0037771	51.282	117	53	2	104	217	1	116	2.75e-30	114
MsaG032635	MtrunA17_Chr4g0031741	25.858	379	254	10	103	468	285	649	3.37e-29	120
MsaG032635	MtrunA17_Chr4g0031721	25.916	382	258	9	100	468	314	683	5.92e-28	117
MsaG032635	MtrunA17_Chr2g0328411	25.109	458	305	14	31	468	214	653	2.56e-27	115
MsaG032635	MtrunA17_Chr2g0328381	26.531	343	228	10	138	468	310	640	9.59e-27	113
MsaG032635	MtrunA17_Chr7g0238891	22.090	421	293	12	70	469	334	740	1.71e-25	110
MsaG032635	MtrunA17_Chr2g0328431	25.872	344	228	9	138	468	324	653	3.36e-25	108
MsaG032635	MtrunA17_Chr4g0057291	31.481	270	164	10	208	468	404	661	2.18e-24	106
MsaG032635	MtrunA17_Chr2g0328341	24.719	445	305	13	37	468	210	637	2.43e-24	106
MsaG032635	MtrunA17_Chr5g0401421	25.236	424	255	10	98	468	31	445	2.23e-23	102
MsaG032635	MtrunA17_Chr4g0031731	22.965	344	241	6	138	466	289	623	6.60e-23	102
MsaG032635	MtrunA17_Chr4g0031701	22.251	382	272	8	100	466	252	623	7.16e-23	102
MsaG032635	MtrunA17_Chr7g0245601	28.530	347	210	12	136	469	471	792	1.18e-22	101
MsaG032635	MtrunA17_Chr2g0328401	28.571	224	147	5	201	415	387	606	7.22e-22	99.0
MsaG032635	MtrunA17_Chr2g0328361	25.280	447	288	13	31	468	205	614	2.36e-21	97.1
MsaG032635	MtrunA17_Chr4g0053901	24.289	457	284	11	64	468	21	467	1.08e-19	91.7
MsaG032635	MtrunA17_Chr2g0328371	26.778	239	161	5	184	415	16	247	1.22e-19	88.2
MsaG032635	MtrunA17_Chr1g0183641	24.933	373	253	10	103	468	124	476	1.02e-18	88.6
MsaG032635	MtrunA17_Chr2g0294461	30.357	280	157	12	208	469	326	585	1.37e-18	88.6
MsaG032635	MtrunA17_Chr1g0200401	27.494	411	226	15	101	469	79	459	1.74e-18	87.8
MsaG032635	MtrunA17_Chr4g0038761	28.239	301	183	13	179	469	165	442	3.81e-18	86.7
MsaG032635	MtrunA17_Chr4g0038851	25.496	353	199	10	174	469	124	469	9.74e-18	85.5
MsaG032635	MtrunA17_Chr3g0085681	23.394	436	240	18	103	469	26	436	2.15e-17	84.3
MsaG032635	MtrunA17_Chr5g0401131	24.870	386	261	10	103	469	115	490	3.50e-17	84.0
MsaG032635	MtrunA17_Chr2g0294471	28.727	275	167	10	208	469	318	576	7.93e-17	83.2
MsaG032635	MtrunA17_Chr7g0270031	27.206	272	172	8	208	469	299	554	3.81e-16	80.9
MsaG032635	MtrunA17_Chr5g0396491	30.968	155	96	2	321	469	329	478	3.18e-15	77.8
MsaG032635	MtrunA17_Chr3g0085361	29.213	178	106	6	303	469	182	350	7.27e-14	72.8
MsaG032635	MtrunA17_Chr3g0114841	26.115	314	189	13	174	468	210	499	9.17e-13	70.1
MsaG032635	MtrunA17_Chr5g0424131	24.495	396	254	14	101	468	120	498	4.62e-12	68.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG032635	AT5G52510.1	53.112	482	181	12	9	469	183	640	5.46e-143	424
MsaG032635	AT1G21450.1	36.864	472	240	14	20	469	158	593	1.25e-76	251
MsaG032635	AT2G04890.1	35.602	382	215	11	100	469	51	413	1.89e-62	209
MsaG032635	AT5G48150.1	36.061	391	209	10	100	469	120	490	3.34e-61	207
MsaG032635	AT5G48150.4	36.061	391	209	10	100	469	120	490	3.34e-61	207
MsaG032635	AT5G48150.2	36.061	391	209	10	100	469	120	490	3.34e-61	207
MsaG032635	AT5G48150.3	36.061	391	209	10	100	469	120	490	3.34e-61	207
MsaG032635	AT4G17230.1	33.766	385	225	9	100	469	156	525	6.93e-57	197
MsaG032635	AT4G17230.2	33.766	385	225	9	100	469	156	525	6.93e-57	197
MsaG032635	AT1G50600.3	33.506	385	226	9	100	469	157	526	1.27e-54	191
MsaG032635	AT1G50600.2	33.506	385	226	9	100	469	232	601	4.67e-54	191
MsaG032635	AT1G50600.1	33.506	385	226	9	100	469	228	597	5.95e-54	191
MsaG032635	AT2G01570.1	30.607	379	233	10	101	469	223	581	2.49e-37	144
MsaG032635	AT1G14920.1	29.288	379	238	10	101	469	171	529	8.79e-37	142
MsaG032635	AT2G29060.2	26.914	431	278	13	65	468	234	654	9.72e-36	140
MsaG032635	AT2G29060.1	26.914	431	278	13	65	468	271	691	1.25e-35	140
MsaG032635	AT3G03450.1	32.000	300	186	6	176	469	258	545	2.48e-35	138
MsaG032635	AT1G66350.1	28.469	418	266	12	64	469	110	506	1.02e-34	136
MsaG032635	AT5G59450.1	25.500	400	272	8	85	469	210	598	3.29e-34	135
MsaG032635	AT1G07530.1	25.160	469	308	16	29	468	310	764	5.41e-34	136
MsaG032635	AT5G17490.1	29.178	377	240	11	103	469	157	516	3.64e-32	129
MsaG032635	AT2G29065.1	27.202	386	250	12	103	468	253	627	7.18e-32	129
MsaG032635	AT3G46600.2	24.289	387	259	9	100	469	2	371	8.24e-29	117
MsaG032635	AT3G46600.1	24.479	384	256	9	103	469	213	579	2.23e-28	118
MsaG032635	AT3G46600.3	23.060	451	307	10	36	469	120	547	2.64e-28	118
MsaG032635	AT1G07520.1	23.846	390	271	10	96	468	312	692	1.85e-26	113
MsaG032635	AT1G07520.3	23.846	390	271	10	96	468	313	693	2.10e-26	113
MsaG032635	AT1G07520.2	23.846	390	271	10	96	468	148	528	2.25e-26	112
MsaG032635	AT1G07520.4	23.846	390	271	10	96	468	148	528	2.25e-26	112
MsaG032635	AT2G37650.1	24.615	390	253	11	100	469	345	713	5.05e-25	108
MsaG032635	AT2G37650.2	24.615	390	253	11	100	469	333	701	5.59e-25	108
MsaG032635	AT5G66770.1	31.667	300	176	11	184	469	300	584	7.10e-24	105
MsaG032635	AT3G50650.1	32.343	303	174	14	184	469	254	542	1.20e-23	104
MsaG032635	AT3G54220.1	30.068	296	177	12	180	468	377	649	3.07e-22	100
MsaG032635	AT3G49950.1	25.831	391	257	13	100	468	28	407	9.91e-22	97.4
MsaG032635	AT4G37650.1	25.879	398	249	12	103	469	147	529	1.43e-19	92.0
MsaG032635	AT1G50420.1	32.258	155	94	3	321	469	330	479	1.30e-16	82.4
MsaG032635	AT1G55580.1	22.892	415	264	11	100	469	42	445	8.92e-16	79.7
MsaG032635	AT2G45160.1	25.137	366	243	12	117	469	292	639	1.42e-14	76.6
MsaG032635	AT1G63100.2	28.505	214	138	8	208	415	388	592	3.47e-14	75.5
MsaG032635	AT1G63100.1	28.505	214	138	8	208	415	363	567	3.62e-14	75.5
MsaG032635	AT4G08250.1	26.452	310	192	13	176	468	186	476	7.55e-13	70.9

Find 102 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATTGGGCCCGGACCTGGGCC+TGG	0.226567	6:+58131336	MsaT032635.1:CDS
CGAGTTGACTCGCGAGTTAT+TGG	0.228199	6:+58132019	MsaT032635.1:CDS
GGCTGCAAATCTCGCAATTC+TGG	0.228552	6:+58131734	MsaT032635.1:CDS
GAGACTTATCAGAATCTAAT+TGG	0.254281	6:+58131318	MsaT032635.1:CDS
TTGTTTCAAGGTTGGTTTCA+TGG	0.293135	6:+58131713	MsaT032635.1:CDS
CCTGTTGTTGCGGAATTGTT+CGG	0.297926	6:+58131645	MsaT032635.1:CDS
ACCTGGGCCTGGGCCTGGTC+AGG	0.310562	6:+58131347	MsaT032635.1:CDS
CTGTTGTTGCGGAATTGTTC+GGG	0.326798	6:+58131646	MsaT032635.1:CDS
TTGGGCCCGGACCTGGGCCT+GGG	0.329919	6:+58131337	MsaT032635.1:CDS
CCCGGACCTGGGCCTGGGCC+TGG	0.330968	6:+58131342	MsaT032635.1:CDS
GAATCTGAATTCGATGAATT+CGG	0.332765	6:+58131557	MsaT032635.1:CDS
ACCAGGCCCAGGCCCAGGTC+CGG	0.345324	6:-58131343	None:intergenic
CACTCACGGTTGCTTCTGTT+TGG	0.353225	6:+58132552	MsaT032635.1:CDS
AGCGCGTGAGGCGGCGCGTG+AGG	0.389779	6:+58131851	MsaT032635.1:CDS
GAGTTGACTCGCGAGTTATT+GGG	0.392816	6:+58132020	MsaT032635.1:CDS
TGGAATTTGCTTTGGTTGGA+TGG	0.396029	6:+58132523	MsaT032635.1:CDS
GGCGCGTGTTGCAGAGTCAT+GGG	0.403439	6:+58132220	MsaT032635.1:CDS
ATTAAATCGCGACTCAATAT+CGG	0.408479	6:+58132449	MsaT032635.1:CDS
AATCTAATTGGGCCCGGACC+TGG	0.411924	6:+58131330	MsaT032635.1:CDS
GCCTGACCAGGCCCAGGCCC+AGG	0.417077	6:-58131348	None:intergenic
GCGTGAGGGGTTTAAGTTGA+AGG	0.417985	6:+58131866	MsaT032635.1:CDS
TTTCGAGTTTCGTGTTGTTT+CGG	0.418985	6:+58131977	MsaT032635.1:CDS
GCGCGTGAGGCGGCGCGTGA+GGG	0.419954	6:+58131852	MsaT032635.1:CDS
CAAGCGGAGAAGCTAAGAAT+TGG	0.420635	6:+58131954	MsaT032635.1:CDS
ATGGCGCGCAAGGATGAGTA+TGG	0.425941	6:+58132382	MsaT032635.1:CDS
GGAAAACTCGGTTTGTTTCA+AGG	0.430920	6:+58131701	MsaT032635.1:CDS
TCAAGCACAAGCTCAGAAAC+TGG	0.431854	6:+58131371	MsaT032635.1:CDS
TGGCGCGTGTTGCAGAGTCA+TGG	0.446031	6:+58132219	MsaT032635.1:CDS
TCCGTTGACACACTTTCATC+CGG	0.449000	6:-58132098	None:intergenic
TAACGAGTCGCGAGTTAACT+CGG	0.451482	6:+58132475	MsaT032635.1:CDS
CCAGGCCCAGGCCCAGGTCC+GGG	0.452097	6:-58131342	None:intergenic
ATCTAATTGGGCCCGGACCT+GGG	0.452655	6:+58131331	MsaT032635.1:CDS
CGCTTTATGTGACTCGGTCG+AGG	0.459461	6:+58132253	MsaT032635.1:CDS
CGCGCAAGGATGAGTATGGC+GGG	0.461869	6:+58132386	MsaT032635.1:CDS
GAGAATGGTGGAATTTGCTT+TGG	0.462149	6:+58132515	MsaT032635.1:CDS
ATGGTGGAATTTGCTTTGGT+TGG	0.463415	6:+58132519	MsaT032635.1:CDS
GTATAAGCTGAATAGAATTC+CGG	0.464091	6:+58132079	MsaT032635.1:CDS
GGAATTTGCTTTGGTTGGAT+GGG	0.464672	6:+58132524	MsaT032635.1:CDS
GCTTGTGCTTGAGCCTGACC+AGG	0.466408	6:-58131360	None:intergenic
GTTGAAGGTTGTTGCGGTGG+CGG	0.467280	6:+58131881	MsaT032635.1:CDS
CCGAACAATTCCGCAACAAC+AGG	0.470616	6:-58131645	None:intergenic
TCAACGGTTAGCGAATTTCA+TGG	0.471865	6:+58131581	MsaT032635.1:CDS
GTTGAAATCGAGGATGAATC+CGG	0.473635	6:+58131611	MsaT032635.1:CDS
GCTTGAGCCTGACCAGGCCC+AGG	0.481659	6:-58131354	None:intergenic
GTTGTTGCGGTGGCGGAGAA+CGG	0.484971	6:+58131888	MsaT032635.1:CDS
AGACTTATCAGAATCTAATT+GGG	0.485068	6:+58131319	MsaT032635.1:CDS
CTCCCTCTTCAATCTTGACT+CGG	0.486598	6:-58132286	None:intergenic
AACTCGGTTTGTTTCAAGGT+TGG	0.489425	6:+58131705	MsaT032635.1:CDS
CGCGTGAGGCGGCGCGTGAG+GGG	0.490221	6:+58131853	MsaT032635.1:CDS
GCTCAAACCATGACCATGTC+CGG	0.491270	6:+58131162	None:intergenic
TTGCTTTAGAGATCTTGAAC+AGG	0.498596	6:+58131520	MsaT032635.1:CDS
TCAGTTGTTGTTGGAAAACT+CGG	0.502026	6:+58131689	MsaT032635.1:CDS
CTGTTATTACAACAAGTGAA+TGG	0.505097	6:+58131292	MsaT032635.1:CDS
CTCTTCAATCTTGACTCGGT+CGG	0.514145	6:-58132282	None:intergenic
CGCGCTCAAAGCGCGTGAGG+CGG	0.514899	6:+58131842	MsaT032635.1:CDS
CTCGAAGATAACGACGAAGA+AGG	0.517103	6:+58131252	MsaT032635.1:CDS
GATGACGTTGTTGATGAAGT+TGG	0.523797	6:-58131405	None:intergenic
TGAGTCGACTCAGTTGTTGT+TGG	0.533088	6:+58131680	MsaT032635.1:CDS
TCGAAAATTGTGCAACTTGG+TGG	0.535180	6:+58132313	MsaT032635.1:CDS
TCACACTCTTCTACAAGAGT+TGG	0.538873	6:+58131218	MsaT032635.1:CDS
TTTAGAGATCTTGAACAGGT+TGG	0.541908	6:+58131524	MsaT032635.1:CDS
TAACGACGAAGAAGGTGAAA+CGG	0.546401	6:+58131260	MsaT032635.1:CDS
CTTGGTGGCTTGTGAAGGTA+GGG	0.547488	6:+58132328	MsaT032635.1:CDS
TTATTCCGCTTTATGTGACT+CGG	0.559717	6:+58132247	MsaT032635.1:CDS
GAAACTCGCGCCGCGTGTTG+TGG	0.562154	6:+58132154	MsaT032635.1:CDS
GATGCTGCATTTGAAGAAAA+CGG	0.565293	6:+58131756	MsaT032635.1:CDS
TGAAAATCCACCTGTTGTTG+CGG	0.565636	6:+58131635	MsaT032635.1:CDS
TATCAGAATCTAATTGGGCC+CGG	0.565651	6:+58131324	MsaT032635.1:CDS
AACGAGTCGCGAGTTAACTC+GGG	0.568702	6:+58132476	MsaT032635.1:CDS
TCCGGATGAAAGTGTGTCAA+CGG	0.577258	6:+58132097	MsaT032635.1:CDS
GACCGAGTCAAGATTGAAGA+GGG	0.577730	6:+58132284	MsaT032635.1:CDS
ACTTGGTGGCTTGTGAAGGT+AGG	0.578105	6:+58132327	MsaT032635.1:CDS
GTTTAAGTTGAAGGTTGTTG+CGG	0.578524	6:+58131875	MsaT032635.1:CDS
AACAATTCCGCAACAACAGG+TGG	0.579323	6:-58131642	None:intergenic
CTCAGTGTGAAAGAAGAGAA+TGG	0.580110	6:+58132500	MsaT032635.1:CDS
GCTGCAAATGCGATTTCAGA+AGG	0.580818	6:+58131486	MsaT032635.1:CDS
GTCATCAACTTCTTCATCAG+CGG	0.587327	6:+58131422	MsaT032635.1:CDS
TGCAACTTGGTGGCTTGTGA+AGG	0.588412	6:+58132323	MsaT032635.1:CDS
CTCGACCGAGTCACATAAAG+CGG	0.588841	6:-58132252	None:intergenic
TAAGTTGAAGGTTGTTGCGG+TGG	0.592167	6:+58131878	MsaT032635.1:CDS
TGGTGAGAGCGTTGAAATCG+AGG	0.600312	6:+58131601	MsaT032635.1:CDS
GCCGCGTGTTGTGGTTGTTG+TGG	0.610494	6:+58132163	MsaT032635.1:CDS
TCACGCGCTCAAAGCGCGTG+AGG	0.611087	6:+58131839	MsaT032635.1:CDS
TAGCGGTGGGTGAGATGTTG+AGG	0.615342	6:+58131928	MsaT032635.1:CDS
CGCCGCAAAAGTGTGTCACG+TGG	0.618368	6:-58132125	None:intergenic
CGACCGAGTCAAGATTGAAG+AGG	0.620356	6:+58132283	MsaT032635.1:CDS
ATTCGATGAATTCGGATCAA+CGG	0.621073	6:+58131565	MsaT032635.1:CDS
GCGCGTGTTGCAGAGTCATG+GGG	0.623740	6:+58132221	MsaT032635.1:CDS
GTTGCGGTGGCGGAGAACGG+CGG	0.627141	6:+58131891	MsaT032635.1:CDS
AAGGTAGGGATCGTGTCGAA+AGG	0.628894	6:+58132342	MsaT032635.1:CDS
GAGTCGCGATTTAATCGACT+CGG	0.638217	6:-58132441	None:intergenic
GAGTCGAAAATTGTGCAACT+TGG	0.647172	6:+58132310	MsaT032635.1:CDS
TCCACAACAACCACAACACG+CGG	0.647784	6:-58132164	None:intergenic
GCGCGCAAGGATGAGTATGG+CGG	0.653133	6:+58132385	MsaT032635.1:CDS
TGAGATGTTGAGGCTTCAAG+CGG	0.656124	6:+58131938	MsaT032635.1:CDS
TTGGATGGGAAGAACACTCA+CGG	0.668699	6:+58132538	MsaT032635.1:CDS
GGATCGTGTCGAAAGGTGTG+AGG	0.671431	6:+58132349	MsaT032635.1:CDS
GCGCAAGGATGAGTATGGCG+GGG	0.685055	6:+58132387	MsaT032635.1:CDS
CGGTGATGATAGAGTGATAG+CGG	0.689852	6:+58131911	MsaT032635.1:CDS
AGTGTGAAAGAAGAGAATGG+TGG	0.698221	6:+58132503	MsaT032635.1:CDS
TGATGATAGAGTGATAGCGG+TGG	0.709647	6:+58131914	MsaT032635.1:CDS
GATGATAGAGTGATAGCGGT+GGG	0.720839	6:+58131915	MsaT032635.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	58131171	58132580	58131171	ID=MsaG032635
Chr6	mRNA	58131171	58132580	58131171	ID=MsaT032635.1;Parent=MsaG032635
Chr6	exon	58131171	58132580	58131171	ID=MsaT032635.1.exon1;Parent=MsaT032635.1
Chr6	CDS	58131171	58132580	58131171	ID=cds.MsaT032635.1;Parent=MsaT032635.1

Gene Sequence

>MsaT032635.1

ATGACCATGTCCGGTAAAATAGAAGAAAACAACGTCAATAACAACGATCACACTCTTCTACAAGAGTTGGAGAAGCAGCTTCTCGAAGATAACGACGAAGAAGGTGAAACGGAAACAGCTTCTGTTATTACAACAAGTGAATGGTCAGAGACTTATCAGAATCTAATTGGGCCCGGACCTGGGCCTGGGCCTGGTCAGGCTCAAGCACAAGCTCAGAAACTGGTATCTTCATCACCAACTTCATCAACAACGTCATCAACTTCTTCATCAGCGGCTTCACCTGCTTCTGTTTGTTCAAAACAAACGCTAATTGAAGCTGCAAATGCGATTTCAGAAGGTAAAAATGATGTTGCTTTAGAGATCTTGAACAGGTTGGTTCAGAATTTGAATCTGAATTCGATGAATTCGGATCAACGGTTAGCGAATTTCATGGTGAGAGCGTTGAAATCGAGGATGAATCCGGTTGAAAATCCACCTGTTGTTGCGGAATTGTTCGGGAGAGAACATGCTGAGTCGACTCAGTTGTTGTTGGAAAACTCGGTTTGTTTCAAGGTTGGTTTCATGGCTGCAAATCTCGCAATTCTGGATGCTGCATTTGAAGAAAACGGTAACAGTTTCTGTGTAGTTGATTTTGAAATTGGACAGGGAAAACAGTATGTGAATCTTCTTCACGCGCTCAAAGCGCGTGAGGCGGCGCGTGAGGGGTTTAAGTTGAAGGTTGTTGCGGTGGCGGAGAACGGCGGTGATGATAGAGTGATAGCGGTGGGTGAGATGTTGAGGCTTCAAGCGGAGAAGCTAAGAATTGGTTTCGAGTTTCGTGTTGTTTCGGTGTCTCAGAGACAAGTCTACGAGTTGACTCGCGAGTTATTGGGATGTGATGTTGAAGAGACAGTAATTGTGAATTTCGCGTATAAGCTGAATAGAATTCCGGATGAAAGTGTGTCAACGGAGAATCCACGTGACACACTTTTGCGGCGCGTGAAGAAACTCGCGCCGCGTGTTGTGGTTGTTGTGGAACAAGAAATGAATTGTAATACCGCGCCGTTTTTGGCGCGTGTTGCAGAGTCATGGGGTTATTATTCCGCTTTATGTGACTCGGTCGAGGAAAATTCCGACCGAGTCAAGATTGAAGAGGGAGTGAGTCGAAAATTGTGCAACTTGGTGGCTTGTGAAGGTAGGGATCGTGTCGAAAGGTGTGAGGTTTTTGGCAAATGGCGCGCAAGGATGAGTATGGCGGGGTTTAAGATGAAACCAATGAGTCAAAATGTTGCCGAGTCGATTAAATCGCGACTCAATATCGGTAATAACGAGTCGCGAGTTAACTCGGGACTCAGTGTGAAAGAAGAGAATGGTGGAATTTGCTTTGGTTGGATGGGAAGAACACTCACGGTTGCTTCTGTTTGGCGTTAA

Protein sequence

>MsaT032635.1

MTMSGKIEENNVNNNDHTLLQELEKQLLEDNDEEGETETASVITTSEWSETYQNLIGPGPGPGPGQAQAQAQKLVSSSPTSSTTSSTSSSAASPASVCSKQTLIEAANAISEGKNDVALEILNRLVQNLNLNSMNSDQRLANFMVRALKSRMNPVENPPVVAELFGREHAESTQLLLENSVCFKVGFMAANLAILDAAFEENGNSFCVVDFEIGQGKQYVNLLHALKAREAAREGFKLKVVAVAENGGDDRVIAVGEMLRLQAEKLRIGFEFRVVSVSQRQVYELTRELLGCDVEETVIVNFAYKLNRIPDESVSTENPRDTLLRRVKKLAPRVVVVVEQEMNCNTAPFLARVAESWGYYSALCDSVEENSDRVKIEEGVSRKLCNLVACEGRDRVERCEVFGKWRARMSMAGFKMKPMSQNVAESIKSRLNIGNNESRVNSGLSVKEENGGICFGWMGRTLTVASVWR*