Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG032705 | XP_039685680.1 | 77.892 | 389 | 35 | 1 | 1 | 338 | 81 | 469 | 0.0 | 643 |
MsaG032705 | XP_039685680.1 | 80.100 | 201 | 36 | 2 | 339 | 535 | 599 | 799 | 1.68e-96 | 322 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG032705 | sp|Q9SZL8|FRS5_ARATH | 33.333 | 267 | 155 | 4 | 20 | 281 | 118 | 366 | 1.24e-38 | 154 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG032705 | tr|A0A2Z6PJC0|A0A2Z6PJC0_TRISU | 80.976 | 205 | 35 | 3 | 339 | 540 | 452 | 655 | 2.93e-103 | 334 |
MsaG032705 | tr|A0A2Z6PJC0|A0A2Z6PJC0_TRISU | 81.250 | 352 | 53 | 1 | 1 | 339 | 1 | 352 | 0.0 | 600 |
Gene ID | Type | Classification |
---|---|---|
MsaG032705 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG032705 | MtrunA17_Chr3g0088371 | 83.696 | 184 | 27 | 1 | 374 | 554 | 1 | 184 | 1.99e-105 | 314 |
MsaG032705 | MtrunA17_Chr2g0324011 | 31.980 | 394 | 193 | 9 | 10 | 349 | 43 | 415 | 5.82e-53 | 189 |
MsaG032705 | MtrunA17_Chr3g0082121 | 30.670 | 388 | 193 | 8 | 2 | 338 | 70 | 432 | 1.39e-50 | 185 |
MsaG032705 | MtrunA17_Chr3g0082121 | 33.088 | 136 | 78 | 6 | 350 | 483 | 531 | 655 | 5.05e-12 | 68.9 |
MsaG032705 | MtrunA17_Chr7g0258861 | 36.704 | 267 | 153 | 4 | 8 | 272 | 42 | 294 | 5.62e-50 | 174 |
MsaG032705 | MtrunA17_Chr1g0164591 | 36.226 | 265 | 158 | 4 | 67 | 331 | 1 | 254 | 5.29e-48 | 170 |
MsaG032705 | MtrunA17_Chr1g0202341 | 29.708 | 377 | 198 | 8 | 23 | 350 | 99 | 457 | 5.32e-42 | 160 |
MsaG032705 | MtrunA17_Chr6g0475591 | 90.411 | 73 | 7 | 0 | 124 | 196 | 1 | 73 | 3.17e-41 | 143 |
MsaG032705 | MtrunA17_Chr8g0363841 | 27.493 | 371 | 193 | 8 | 21 | 337 | 64 | 412 | 2.11e-39 | 152 |
MsaG032705 | MtrunA17_Chr5g0448761 | 32.453 | 265 | 164 | 3 | 20 | 281 | 105 | 357 | 3.09e-39 | 153 |
MsaG032705 | MtrunA17_Chr1g0203721 | 30.483 | 269 | 160 | 5 | 20 | 281 | 108 | 356 | 1.28e-37 | 148 |
MsaG032705 | MtrunA17_Chr1g0203721 | 29.054 | 148 | 87 | 3 | 359 | 495 | 571 | 711 | 4.84e-12 | 68.9 |
MsaG032705 | MtrunA17_Chr2g0296781 | 29.003 | 331 | 181 | 6 | 57 | 337 | 61 | 387 | 7.53e-35 | 139 |
MsaG032705 | MtrunA17_Chr6g0458391 | 31.298 | 262 | 147 | 4 | 20 | 281 | 270 | 498 | 4.52e-34 | 137 |
MsaG032705 | MtrunA17_Chr6g0477261 | 31.111 | 270 | 138 | 4 | 116 | 337 | 7 | 276 | 4.01e-33 | 134 |
MsaG032705 | MtrunA17_Chr5g0441581 | 27.711 | 332 | 182 | 5 | 54 | 337 | 94 | 415 | 2.64e-31 | 129 |
MsaG032705 | MtrunA17_Chr2g0287651 | 24.451 | 364 | 211 | 7 | 21 | 336 | 120 | 467 | 2.91e-29 | 123 |
MsaG032705 | MtrunA17_Chr1g0203051 | 26.538 | 260 | 177 | 2 | 21 | 280 | 124 | 369 | 9.55e-28 | 117 |
MsaG032705 | MtrunA17_Chr2g0291591 | 30.204 | 245 | 143 | 6 | 51 | 282 | 122 | 351 | 9.96e-28 | 117 |
MsaG032705 | MtrunA17_Chr2g0329031 | 30.702 | 228 | 150 | 3 | 56 | 283 | 78 | 297 | 9.58e-27 | 115 |
MsaG032705 | MtrunA17_Chr1g0207551 | 27.957 | 279 | 179 | 5 | 5 | 281 | 64 | 322 | 3.27e-26 | 113 |
MsaG032705 | MtrunA17_Chr1g0207551 | 30.233 | 129 | 73 | 3 | 349 | 474 | 527 | 641 | 1.48e-12 | 70.5 |
MsaG032705 | MtrunA17_Chr5g0440451 | 40.000 | 125 | 75 | 0 | 157 | 281 | 214 | 338 | 3.50e-26 | 113 |
MsaG032705 | MtrunA17_Chr3g0118611 | 41.600 | 125 | 73 | 0 | 157 | 281 | 111 | 235 | 4.15e-26 | 113 |
MsaG032705 | MtrunA17_Chr5g0431001 | 27.875 | 287 | 184 | 7 | 1 | 281 | 93 | 362 | 1.44e-25 | 110 |
MsaG032705 | MtrunA17_Chr1g0198761 | 30.705 | 241 | 153 | 6 | 49 | 281 | 114 | 348 | 1.57e-25 | 111 |
MsaG032705 | MtrunA17_Chr1g0196541 | 25.182 | 274 | 149 | 3 | 116 | 337 | 118 | 387 | 1.64e-25 | 111 |
MsaG032705 | MtrunA17_Chr2g0287061 | 27.843 | 255 | 159 | 5 | 27 | 281 | 209 | 438 | 2.77e-24 | 107 |
MsaG032705 | MtrunA17_Chr5g0448511 | 39.535 | 129 | 77 | 1 | 152 | 280 | 1 | 128 | 3.51e-24 | 106 |
MsaG032705 | MtrunA17_Chr2g0276841 | 25.519 | 337 | 194 | 9 | 54 | 336 | 137 | 470 | 7.27e-24 | 106 |
MsaG032705 | MtrunA17_Chr2g0290391 | 26.939 | 245 | 161 | 5 | 51 | 280 | 113 | 354 | 1.05e-22 | 102 |
MsaG032705 | MtrunA17_Chr2g0291581 | 25.979 | 281 | 178 | 4 | 2 | 282 | 98 | 348 | 7.15e-22 | 99.8 |
MsaG032705 | MtrunA17_Chr2g0294841 | 28.676 | 272 | 164 | 9 | 21 | 281 | 92 | 344 | 9.43e-22 | 99.8 |
MsaG032705 | MtrunA17_Chr3g0080351 | 36.090 | 133 | 85 | 0 | 149 | 281 | 224 | 356 | 7.24e-21 | 97.1 |
MsaG032705 | MtrunA17_Chr3g0080351 | 26.744 | 172 | 99 | 4 | 341 | 508 | 553 | 701 | 3.94e-11 | 65.9 |
MsaG032705 | MtrunA17_Chr1g0172971 | 80.769 | 52 | 10 | 0 | 1 | 52 | 66 | 117 | 6.52e-20 | 93.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG032705 | AT4G38180.1 | 33.333 | 267 | 155 | 4 | 20 | 281 | 118 | 366 | 1.27e-39 | 154 |
MsaG032705 | AT2G27110.2 | 31.674 | 221 | 134 | 4 | 63 | 281 | 108 | 313 | 1.05e-27 | 118 |
MsaG032705 | AT2G27110.2 | 31.783 | 129 | 77 | 4 | 348 | 476 | 518 | 635 | 8.89e-12 | 68.6 |
MsaG032705 | AT2G27110.1 | 31.674 | 221 | 134 | 4 | 63 | 281 | 108 | 313 | 1.05e-27 | 118 |
MsaG032705 | AT2G27110.1 | 31.783 | 129 | 77 | 4 | 348 | 476 | 518 | 635 | 8.89e-12 | 68.6 |
MsaG032705 | AT3G06250.2 | 36.486 | 148 | 93 | 1 | 135 | 281 | 295 | 442 | 7.53e-27 | 115 |
MsaG032705 | AT3G06250.1 | 36.486 | 148 | 93 | 1 | 135 | 281 | 295 | 442 | 7.53e-27 | 115 |
MsaG032705 | AT3G06250.3 | 36.486 | 148 | 93 | 1 | 135 | 281 | 295 | 442 | 7.53e-27 | 115 |
MsaG032705 | AT2G27110.3 | 34.940 | 166 | 94 | 2 | 116 | 281 | 17 | 168 | 1.38e-26 | 115 |
MsaG032705 | AT2G27110.3 | 32.031 | 128 | 76 | 4 | 348 | 475 | 373 | 489 | 7.66e-12 | 68.6 |
MsaG032705 | AT4G15090.1 | 31.250 | 224 | 151 | 3 | 59 | 281 | 121 | 342 | 2.64e-26 | 114 |
MsaG032705 | AT4G15090.1 | 30.952 | 168 | 98 | 4 | 339 | 505 | 536 | 686 | 1.89e-16 | 83.6 |
MsaG032705 | AT4G15090.5 | 31.250 | 224 | 151 | 3 | 59 | 281 | 121 | 342 | 2.64e-26 | 114 |
MsaG032705 | AT4G15090.5 | 30.952 | 168 | 98 | 4 | 339 | 505 | 536 | 686 | 1.89e-16 | 83.6 |
MsaG032705 | AT4G15090.3 | 31.250 | 224 | 151 | 3 | 59 | 281 | 121 | 342 | 2.64e-26 | 114 |
MsaG032705 | AT4G15090.3 | 30.952 | 168 | 98 | 4 | 339 | 505 | 536 | 686 | 1.89e-16 | 83.6 |
MsaG032705 | AT4G15090.2 | 31.250 | 224 | 151 | 3 | 59 | 281 | 121 | 342 | 2.64e-26 | 114 |
MsaG032705 | AT4G15090.2 | 30.952 | 168 | 98 | 4 | 339 | 505 | 536 | 686 | 1.89e-16 | 83.6 |
MsaG032705 | AT4G15090.4 | 31.250 | 224 | 151 | 3 | 59 | 281 | 121 | 342 | 2.64e-26 | 114 |
MsaG032705 | AT4G15090.4 | 30.952 | 168 | 98 | 4 | 339 | 505 | 536 | 686 | 1.89e-16 | 83.6 |
MsaG032705 | AT5G28530.1 | 26.389 | 288 | 187 | 5 | 5 | 280 | 84 | 358 | 5.40e-25 | 110 |
MsaG032705 | AT5G28530.3 | 26.389 | 288 | 187 | 5 | 5 | 280 | 84 | 358 | 5.85e-25 | 109 |
MsaG032705 | AT5G28530.2 | 26.389 | 288 | 187 | 5 | 5 | 280 | 84 | 358 | 5.85e-25 | 109 |
MsaG032705 | AT1G76320.3 | 27.715 | 267 | 161 | 7 | 19 | 281 | 41 | 279 | 4.34e-23 | 103 |
MsaG032705 | AT1G76320.1 | 27.715 | 267 | 161 | 7 | 19 | 281 | 41 | 279 | 4.63e-23 | 103 |
MsaG032705 | AT1G76320.4 | 27.715 | 267 | 161 | 7 | 19 | 281 | 41 | 279 | 4.63e-23 | 103 |
MsaG032705 | AT1G76320.2 | 27.715 | 267 | 161 | 7 | 19 | 281 | 41 | 279 | 4.70e-23 | 103 |
MsaG032705 | AT4G38170.1 | 42.593 | 108 | 57 | 2 | 171 | 277 | 24 | 127 | 1.67e-22 | 101 |
MsaG032705 | AT2G32250.5 | 27.599 | 279 | 140 | 7 | 5 | 281 | 68 | 286 | 2.70e-22 | 101 |
MsaG032705 | AT2G32250.8 | 27.599 | 279 | 140 | 7 | 5 | 281 | 27 | 245 | 2.93e-22 | 101 |
MsaG032705 | AT2G32250.7 | 27.599 | 279 | 140 | 7 | 5 | 281 | 27 | 245 | 3.02e-22 | 101 |
MsaG032705 | AT2G32250.6 | 27.599 | 279 | 140 | 7 | 5 | 281 | 68 | 286 | 3.14e-22 | 101 |
MsaG032705 | AT2G32250.1 | 27.599 | 279 | 140 | 7 | 5 | 281 | 68 | 286 | 3.14e-22 | 101 |
MsaG032705 | AT2G32250.3 | 27.599 | 279 | 140 | 7 | 5 | 281 | 68 | 286 | 3.14e-22 | 101 |
MsaG032705 | AT2G32250.2 | 27.599 | 279 | 140 | 7 | 5 | 281 | 68 | 286 | 3.27e-22 | 101 |
MsaG032705 | AT2G32250.4 | 27.599 | 279 | 140 | 7 | 5 | 281 | 68 | 286 | 3.27e-22 | 101 |
MsaG032705 | AT5G18960.2 | 33.775 | 151 | 97 | 3 | 134 | 281 | 316 | 466 | 4.22e-22 | 101 |
MsaG032705 | AT5G18960.1 | 33.775 | 151 | 97 | 3 | 134 | 281 | 316 | 466 | 4.22e-22 | 101 |
MsaG032705 | AT1G10240.2 | 26.423 | 246 | 171 | 5 | 43 | 281 | 102 | 344 | 5.25e-21 | 97.4 |
MsaG032705 | AT1G10240.1 | 26.423 | 246 | 171 | 5 | 43 | 281 | 102 | 344 | 5.25e-21 | 97.4 |
MsaG032705 | AT1G80010.1 | 33.766 | 154 | 95 | 3 | 130 | 282 | 242 | 389 | 5.53e-21 | 97.4 |
MsaG032705 | AT3G22170.2 | 24.296 | 284 | 174 | 6 | 5 | 280 | 100 | 350 | 8.58e-19 | 90.9 |
MsaG032705 | AT3G22170.1 | 24.296 | 284 | 174 | 6 | 5 | 280 | 100 | 350 | 8.58e-19 | 90.9 |
MsaG032705 | AT1G52520.1 | 23.843 | 281 | 186 | 6 | 2 | 282 | 112 | 364 | 2.14e-16 | 83.2 |
MsaG032705 | AT4G19990.6 | 32.867 | 143 | 85 | 2 | 155 | 296 | 163 | 295 | 2.95e-15 | 79.7 |
MsaG032705 | AT4G19990.6 | 35.338 | 133 | 72 | 3 | 347 | 477 | 495 | 615 | 7.37e-13 | 72.0 |
MsaG032705 | AT4G19990.2 | 32.867 | 143 | 85 | 2 | 155 | 296 | 163 | 295 | 2.95e-15 | 79.7 |
MsaG032705 | AT4G19990.2 | 35.338 | 133 | 72 | 3 | 347 | 477 | 495 | 615 | 7.37e-13 | 72.0 |
MsaG032705 | AT4G19990.1 | 32.867 | 143 | 85 | 2 | 155 | 296 | 106 | 238 | 3.16e-15 | 79.3 |
MsaG032705 | AT4G19990.1 | 35.338 | 133 | 72 | 3 | 347 | 477 | 438 | 558 | 6.90e-13 | 72.0 |
MsaG032705 | AT4G19990.5 | 32.867 | 143 | 85 | 2 | 155 | 296 | 163 | 295 | 3.38e-15 | 79.3 |
MsaG032705 | AT4G19990.5 | 35.338 | 133 | 72 | 3 | 347 | 477 | 495 | 615 | 7.56e-13 | 72.0 |
MsaG032705 | AT4G19990.3 | 32.867 | 143 | 85 | 2 | 155 | 296 | 163 | 295 | 3.38e-15 | 79.3 |
MsaG032705 | AT4G19990.3 | 35.338 | 133 | 72 | 3 | 347 | 477 | 495 | 615 | 7.18e-13 | 72.0 |
MsaG032705 | AT4G19990.4 | 32.867 | 143 | 85 | 2 | 155 | 296 | 163 | 295 | 3.38e-15 | 79.3 |
MsaG032705 | AT4G19990.4 | 35.338 | 133 | 72 | 3 | 347 | 477 | 495 | 615 | 7.18e-13 | 72.0 |
MsaG032705 | AT4G19990.7 | 32.867 | 143 | 85 | 2 | 155 | 296 | 177 | 309 | 3.49e-15 | 79.3 |
MsaG032705 | AT4G19990.7 | 35.338 | 133 | 72 | 3 | 347 | 477 | 509 | 629 | 7.99e-13 | 72.0 |
Find 87 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 6:-60313893 | None:intergenic |
CAACAAGATTATGCTCTATT+TGG | 0.198611 | 6:+60311973 | MsaT032705.1:CDS |
TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 6:+60312476 | MsaT032705.1:intron |
CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 6:+60312509 | MsaT032705.1:CDS |
TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 6:-60312603 | None:intergenic |
TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 6:-60313887 | None:intergenic |
AATCAGATTTCGACTACAAT+TGG | 0.318540 | 6:+60312799 | MsaT032705.1:CDS |
TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 6:+60313739 | MsaT032705.1:CDS |
ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 6:-60312621 | None:intergenic |
GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 6:-60312023 | None:intergenic |
TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | 6:-60313955 | None:intergenic |
TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 6:+60312899 | MsaT032705.1:CDS |
CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 6:+60313731 | MsaT032705.1:CDS |
AACAATAAATATCGGCCATT+AGG | 0.388497 | 6:+60312030 | MsaT032705.1:CDS |
ACCGAACAAACAATAAATAT+CGG | 0.389395 | 6:+60312022 | MsaT032705.1:CDS |
GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 6:+60312898 | MsaT032705.1:CDS |
GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | 6:-60313615 | None:intergenic |
TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 6:-60311493 | None:intergenic |
AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 6:+60313879 | MsaT032705.1:CDS |
TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 6:-60313869 | None:intergenic |
GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 6:+60313764 | MsaT032705.1:CDS |
CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 6:+60313447 | MsaT032705.1:CDS |
GATTATGATCTTCAAACCTT+GGG | 0.413114 | 6:-60313370 | None:intergenic |
GGGTTGTCACAGTCGACATT+AGG | 0.419786 | 6:+60313405 | MsaT032705.1:CDS |
CGATTATGATCTTCAAACCT+TGG | 0.425681 | 6:-60313371 | None:intergenic |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 6:+60311670 | MsaT032705.1:CDS |
AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 6:+60311552 | MsaT032705.1:CDS |
TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 6:-60312614 | None:intergenic |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 6:+60311535 | MsaT032705.1:CDS |
CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 6:-60313548 | None:intergenic |
CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 6:+60311418 | MsaT032705.1:CDS |
GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 6:+60311700 | MsaT032705.1:CDS |
GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 6:+60312853 | MsaT032705.1:CDS |
ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 6:+60313448 | MsaT032705.1:CDS |
ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 6:+60311384 | MsaT032705.1:CDS |
TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 6:-60311529 | None:intergenic |
TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 6:+60311813 | MsaT032705.1:CDS |
CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 6:-60311640 | None:intergenic |
CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 6:+60311378 | MsaT032705.1:CDS |
ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 6:-60312489 | None:intergenic |
CTGTCTATGAACCATCTGTT+GGG | 0.491412 | 6:+60313840 | MsaT032705.1:CDS |
ATCAGATTTCGACTACAATT+GGG | 0.491708 | 6:+60312800 | MsaT032705.1:CDS |
CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 6:+60311826 | MsaT032705.1:CDS |
GAAGCGATGGGTCAAGGAGT+TGG | 0.502080 | 6:+60311745 | MsaT032705.1:CDS |
TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 6:-60311918 | None:intergenic |
AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 6:-60311628 | None:intergenic |
CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 6:+60312886 | MsaT032705.1:CDS |
ATCATAATCGACTTGATGAA+AGG | 0.507955 | 6:+60313384 | MsaT032705.1:CDS |
TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 6:-60311784 | None:intergenic |
ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 6:+60312904 | MsaT032705.1:CDS |
TGTCTATAAGATATATAAGT+GGG | 0.514682 | 6:+60311588 | MsaT032705.1:CDS |
GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 6:-60313364 | None:intergenic |
TCATAATCGACTTGATGAAA+GGG | 0.526860 | 6:+60313385 | MsaT032705.1:CDS |
GACAGAAATTCCTTATAGCT+CGG | 0.533906 | 6:+60313945 | MsaT032705.1:CDS |
GAGAACATCTTATGAAGCGA+TGG | 0.538371 | 6:+60311732 | MsaT032705.1:CDS |
TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 6:+60311429 | MsaT032705.1:CDS |
AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 6:+60311430 | MsaT032705.1:CDS |
TCTTATGAAGCGATGGGTCA+AGG | 0.545849 | 6:+60311739 | MsaT032705.1:CDS |
ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 6:-60312634 | None:intergenic |
CTGAAATCCACCATGAATGT+TGG | 0.557140 | 6:+60313605 | MsaT032705.1:CDS |
AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 6:+60311880 | MsaT032705.1:CDS |
GCTGTCTATGAACCATCTGT+TGG | 0.568181 | 6:+60313839 | MsaT032705.1:CDS |
TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 6:+60313691 | MsaT032705.1:CDS |
ATGTCTATAAGATATATAAG+TGG | 0.572287 | 6:+60311587 | MsaT032705.1:CDS |
GCGATGGGTCAAGGAGTTGG+AGG | 0.575794 | 6:+60311748 | MsaT032705.1:CDS |
TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 6:-60313851 | None:intergenic |
GAAGCAAAAGAAAGATGATG+AGG | 0.585686 | 6:+60313970 | MsaT032705.1:CDS |
TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 6:+60313732 | MsaT032705.1:CDS |
ACCATATACACAGACCAGGC+TGG | 0.590176 | 6:+60312620 | MsaT032705.1:CDS |
ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 6:+60313727 | MsaT032705.1:CDS |
TTGAAGAAAACCTTTCCCCA+AGG | 0.594796 | 6:+60313354 | MsaT032705.1:CDS |
TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 6:-60313807 | None:intergenic |
GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 6:+60311819 | MsaT032705.1:CDS |
TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 6:-60313639 | None:intergenic |
AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 6:+60311822 | MsaT032705.1:CDS |
ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 6:+60313694 | MsaT032705.1:CDS |
AGAACTGGACTGTCACATGT+TGG | 0.620791 | 6:-60311478 | None:intergenic |
AGAACATCTTATGAAGCGAT+GGG | 0.621635 | 6:+60311733 | MsaT032705.1:CDS |
AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 6:-60312855 | None:intergenic |
GGGTCAAGGAGTTGGAGGCA+CGG | 0.624321 | 6:+60311753 | MsaT032705.1:CDS |
ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 6:-60313369 | None:intergenic |
TTTAGTGCCAACATTCATGG+TGG | 0.641441 | 6:-60313612 | None:intergenic |
GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 6:-60313590 | None:intergenic |
GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 6:+60313716 | MsaT032705.1:CDS |
CATGTCGACATAAGAAACCC+CGG | 0.663279 | 6:-60313466 | None:intergenic |
TCAAACCATATACACAGACC+AGG | 0.671057 | 6:+60312616 | MsaT032705.1:CDS |
TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 6:+60313449 | MsaT032705.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr6 | gene | 60311361 | 60314006 | 60311361 | ID=MsaG032705 |
Chr6 | mRNA | 60311361 | 60314006 | 60311361 | ID=MsaT032705.1;Parent=MsaG032705 |
Chr6 | exon | 60311361 | 60312051 | 60311361 | ID=MsaT032705.1.exon1;Parent=MsaT032705.1 |
Chr6 | CDS | 60311361 | 60312051 | 60311361 | ID=cds.MsaT032705.1;Parent=MsaT032705.1 |
Chr6 | exon | 60312486 | 60312641 | 60312486 | ID=MsaT032705.1.exon2;Parent=MsaT032705.1 |
Chr6 | CDS | 60312486 | 60312641 | 60312486 | ID=cds.MsaT032705.1;Parent=MsaT032705.1 |
Chr6 | exon | 60312796 | 60312963 | 60312796 | ID=MsaT032705.1.exon3;Parent=MsaT032705.1 |
Chr6 | CDS | 60312796 | 60312963 | 60312796 | ID=cds.MsaT032705.1;Parent=MsaT032705.1 |
Chr6 | exon | 60313351 | 60314006 | 60313351 | ID=MsaT032705.1.exon4;Parent=MsaT032705.1 |
Chr6 | CDS | 60313351 | 60314006 | 60313351 | ID=cds.MsaT032705.1;Parent=MsaT032705.1 |
Gene Sequence |
Protein sequence |