Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG032783 | XP_013443315.1 | 97.783 | 857 | 19 | 0 | 1 | 857 | 1 | 857 | 0.0 | 1753 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG032783 | sp|Q84TH9|NLP7_ARATH | 52.275 | 945 | 309 | 16 | 34 | 857 | 35 | 958 | 0.0 | 890 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG032783 | tr|A0A072TUX0|A0A072TUX0_MEDTR | 97.783 | 857 | 19 | 0 | 1 | 857 | 1 | 857 | 0.0 | 1753 |
Gene ID | Type | Classification |
---|---|---|
MsaG032783 | TF | RWP-RK |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG017365 | MsaG032783 | 0.824018 | 1.792688e-53 | 4.390417e-51 |
MsaG026782 | MsaG032783 | 0.803668 | 5.262172e-49 | 7.735077e-47 |
MsaG026842 | MsaG032783 | 0.801326 | 1.590494e-48 | 2.215814e-46 |
MsaG028046 | MsaG032783 | 0.837527 | 9.048595e-57 | 3.270993e-54 |
MsaG032783 | MsaG041096 | 0.812024 | 8.967316e-51 | 1.609072e-48 |
MsaG032783 | MsaG033360 | 0.801764 | 1.294592e-48 | 1.821586e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG032783 | MtrunA17_Chr6g0472281 | 97.783 | 857 | 19 | 0 | 1 | 857 | 1 | 857 | 0.0 | 1753 |
MsaG032783 | MtrunA17_Chr1g0203081 | 69.676 | 709 | 180 | 9 | 1 | 692 | 1 | 691 | 0.0 | 969 |
MsaG032783 | MtrunA17_Chr1g0203081 | 65.537 | 177 | 54 | 3 | 688 | 857 | 803 | 979 | 1.62e-59 | 219 |
MsaG032783 | MtrunA17_Chr3g0143921 | 37.500 | 792 | 422 | 18 | 112 | 853 | 139 | 907 | 1.72e-145 | 452 |
MsaG032783 | MtrunA17_Chr2g0329671 | 40.365 | 602 | 301 | 16 | 84 | 667 | 137 | 698 | 1.40e-119 | 385 |
MsaG032783 | MtrunA17_Chr2g0329671 | 34.783 | 138 | 90 | 0 | 718 | 855 | 820 | 957 | 9.91e-20 | 95.1 |
MsaG032783 | MtrunA17_Chr4g0033791 | 40.463 | 561 | 278 | 14 | 112 | 658 | 147 | 665 | 3.17e-114 | 370 |
MsaG032783 | MtrunA17_Chr4g0033791 | 44.444 | 81 | 45 | 0 | 764 | 844 | 826 | 906 | 3.10e-18 | 90.1 |
MsaG032783 | MtrunA17_Chr5g0448621 | 33.676 | 389 | 213 | 9 | 87 | 466 | 98 | 450 | 1.17e-49 | 189 |
MsaG032783 | MtrunA17_Chr5g0448621 | 71.951 | 82 | 23 | 0 | 565 | 646 | 608 | 689 | 3.23e-30 | 128 |
MsaG032783 | MtrunA17_Chr5g0448621 | 42.683 | 82 | 46 | 1 | 759 | 839 | 828 | 909 | 4.43e-13 | 73.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG032783 | AT4G24020.1 | 52.275 | 945 | 309 | 16 | 34 | 857 | 35 | 958 | 0.0 | 890 |
MsaG032783 | AT1G64530.1 | 53.242 | 879 | 315 | 19 | 28 | 857 | 5 | 836 | 0.0 | 865 |
MsaG032783 | AT1G64530.2 | 55.325 | 723 | 245 | 15 | 167 | 857 | 5 | 681 | 0.0 | 743 |
MsaG032783 | AT4G24020.2 | 51.216 | 699 | 233 | 12 | 246 | 857 | 1 | 678 | 0.0 | 632 |
MsaG032783 | AT1G76350.2 | 35.534 | 833 | 459 | 22 | 18 | 828 | 1 | 777 | 2.72e-148 | 457 |
MsaG032783 | AT1G76350.1 | 35.534 | 833 | 459 | 22 | 18 | 828 | 1 | 777 | 2.72e-148 | 457 |
MsaG032783 | AT1G76350.4 | 35.534 | 833 | 459 | 22 | 18 | 828 | 1 | 777 | 2.72e-148 | 457 |
MsaG032783 | AT1G76350.3 | 35.534 | 833 | 459 | 22 | 18 | 828 | 1 | 777 | 2.72e-148 | 457 |
MsaG032783 | AT2G43500.3 | 34.615 | 832 | 439 | 21 | 90 | 856 | 137 | 928 | 2.17e-143 | 448 |
MsaG032783 | AT2G43500.9 | 34.615 | 832 | 439 | 21 | 90 | 856 | 137 | 928 | 2.17e-143 | 448 |
MsaG032783 | AT2G43500.6 | 34.615 | 832 | 439 | 21 | 90 | 856 | 137 | 928 | 2.17e-143 | 448 |
MsaG032783 | AT2G43500.1 | 34.615 | 832 | 439 | 21 | 90 | 856 | 137 | 928 | 2.17e-143 | 448 |
MsaG032783 | AT2G43500.10 | 34.615 | 832 | 439 | 21 | 90 | 856 | 137 | 928 | 2.17e-143 | 448 |
MsaG032783 | AT2G43500.11 | 34.615 | 832 | 439 | 21 | 90 | 856 | 137 | 928 | 2.17e-143 | 448 |
MsaG032783 | AT2G43500.7 | 34.615 | 832 | 439 | 21 | 90 | 856 | 137 | 928 | 2.17e-143 | 448 |
MsaG032783 | AT2G43500.8 | 34.615 | 832 | 439 | 21 | 90 | 856 | 137 | 928 | 2.17e-143 | 448 |
MsaG032783 | AT2G43500.5 | 34.201 | 845 | 438 | 22 | 90 | 856 | 137 | 941 | 3.93e-140 | 439 |
MsaG032783 | AT2G43500.4 | 34.201 | 845 | 438 | 22 | 90 | 856 | 137 | 941 | 3.93e-140 | 439 |
MsaG032783 | AT2G43500.2 | 33.964 | 845 | 440 | 22 | 90 | 856 | 137 | 941 | 6.12e-139 | 436 |
MsaG032783 | AT1G20640.1 | 35.006 | 817 | 468 | 18 | 53 | 842 | 45 | 825 | 1.40e-137 | 430 |
MsaG032783 | AT1G20640.3 | 35.006 | 817 | 468 | 18 | 53 | 842 | 45 | 825 | 1.40e-137 | 430 |
MsaG032783 | AT1G20640.2 | 35.006 | 817 | 468 | 18 | 53 | 842 | 45 | 825 | 1.40e-137 | 430 |
MsaG032783 | AT3G59580.2 | 39.451 | 583 | 304 | 13 | 112 | 686 | 106 | 647 | 1.25e-120 | 387 |
MsaG032783 | AT3G59580.2 | 43.750 | 96 | 52 | 2 | 763 | 856 | 793 | 888 | 4.51e-18 | 90.1 |
MsaG032783 | AT3G59580.3 | 39.451 | 583 | 304 | 13 | 112 | 686 | 106 | 647 | 1.25e-120 | 387 |
MsaG032783 | AT3G59580.3 | 43.750 | 96 | 52 | 2 | 763 | 856 | 793 | 888 | 4.51e-18 | 90.1 |
MsaG032783 | AT3G59580.1 | 39.451 | 583 | 304 | 13 | 112 | 686 | 106 | 647 | 1.25e-120 | 387 |
MsaG032783 | AT3G59580.1 | 43.750 | 96 | 52 | 2 | 763 | 856 | 793 | 888 | 4.51e-18 | 90.1 |
MsaG032783 | AT2G17150.1 | 37.197 | 578 | 308 | 11 | 112 | 650 | 124 | 685 | 2.93e-111 | 362 |
MsaG032783 | AT2G17150.6 | 37.197 | 578 | 308 | 11 | 112 | 650 | 124 | 685 | 2.93e-111 | 362 |
MsaG032783 | AT2G17150.2 | 33.846 | 520 | 292 | 10 | 112 | 595 | 124 | 627 | 1.78e-85 | 286 |
MsaG032783 | AT2G17150.5 | 33.843 | 523 | 291 | 11 | 112 | 595 | 124 | 630 | 6.73e-84 | 282 |
MsaG032783 | AT2G17150.3 | 33.843 | 523 | 291 | 11 | 112 | 595 | 124 | 630 | 6.73e-84 | 282 |
MsaG032783 | AT2G17150.4 | 34.459 | 444 | 237 | 10 | 245 | 650 | 3 | 430 | 5.53e-65 | 230 |
MsaG032783 | AT4G38340.2 | 35.398 | 339 | 189 | 5 | 103 | 437 | 37 | 349 | 1.83e-63 | 227 |
MsaG032783 | AT4G38340.2 | 64.634 | 82 | 29 | 0 | 565 | 646 | 419 | 500 | 8.94e-27 | 117 |
MsaG032783 | AT4G38340.1 | 35.398 | 339 | 189 | 5 | 103 | 437 | 108 | 420 | 6.95e-63 | 227 |
MsaG032783 | AT4G38340.1 | 64.634 | 82 | 29 | 0 | 565 | 646 | 490 | 571 | 1.12e-26 | 117 |
MsaG032783 | AT4G35270.2 | 43.617 | 94 | 51 | 2 | 765 | 856 | 865 | 958 | 8.14e-17 | 85.9 |
MsaG032783 | AT4G35270.1 | 43.617 | 94 | 51 | 2 | 765 | 856 | 865 | 958 | 8.14e-17 | 85.9 |
MsaG032783 | AT4G35270.3 | 43.617 | 94 | 51 | 2 | 765 | 856 | 865 | 958 | 8.14e-17 | 85.9 |
MsaG032783 | AT4G35270.4 | 43.617 | 94 | 51 | 2 | 765 | 856 | 865 | 958 | 8.14e-17 | 85.9 |
Find 162 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGAGGAGTTCAGAAATTT+TGG | 0.134313 | 6:-62691727 | MsaT032783.1:CDS |
GGCATTTGATATCAAGTATT+TGG | 0.155719 | 6:-62689210 | MsaT032783.1:CDS |
GAATGCATTATCCGAGATTT+TGG | 0.190538 | 6:-62691134 | MsaT032783.1:CDS |
GAAATTGTTGAAATAATAAA+TGG | 0.200770 | 6:-62690563 | MsaT032783.1:CDS |
CCGCGGAACTTTGGCTTTGC+CGG | 0.236108 | 6:-62692369 | MsaT032783.1:CDS |
TCCTTCAACAGATGTTATTT+TGG | 0.238876 | 6:-62689459 | MsaT032783.1:CDS |
GAGATGATATCATAAGGTTT+AGG | 0.252384 | 6:-62689301 | MsaT032783.1:CDS |
TTTGATGACATAAATGATAT+AGG | 0.255609 | 6:-62690407 | MsaT032783.1:CDS |
CTTTGAAACTTCATGGCCTT+TGG | 0.283678 | 6:-62694371 | MsaT032783.1:CDS |
TGAATGTTCTTGCTCAAGTT+TGG | 0.289107 | 6:-62692649 | MsaT032783.1:CDS |
ATATTGACTTTGAAACTTCA+TGG | 0.295000 | 6:-62694378 | MsaT032783.1:CDS |
TGATGATGCCTCGCCGGATA+TGG | 0.295685 | 6:-62690477 | MsaT032783.1:CDS |
AGATGATATCATAAGGTTTA+GGG | 0.297192 | 6:-62689300 | MsaT032783.1:CDS |
TGTGAACAAAAGGGTTTGTT+AGG | 0.298735 | 6:-62690668 | MsaT032783.1:CDS |
ACAAAATTTCCAAAGTCTTA+AGG | 0.299670 | 6:-62690624 | MsaT032783.1:CDS |
GTAAAGGTGGTAGAGCTATA+TGG | 0.302407 | 6:+62692747 | None:intergenic |
TTGATGACATAAATGATATA+GGG | 0.306217 | 6:-62690406 | MsaT032783.1:CDS |
CTAGAATAATACTGAACATT+AGG | 0.308143 | 6:+62692434 | None:intergenic |
CGAAGTAGAAGGTTCATTAA+AGG | 0.317422 | 6:+62689637 | None:intergenic |
TTGCAGACTTTATCCACTTC+AGG | 0.317776 | 6:+62692272 | None:intergenic |
ATGCAGGCATAGAAGTGTTT+TGG | 0.319602 | 6:-62691053 | MsaT032783.1:CDS |
AAAGTCCAAATAGGAGAAAA+AGG | 0.324979 | 6:+62694295 | None:intergenic |
GTGTCATTCTTTCCTTGATT+AGG | 0.326052 | 6:+62692705 | None:intergenic |
CAAAGTCTTAAGGTTGCTTC+TGG | 0.326490 | 6:-62690614 | MsaT032783.1:CDS |
CGGTATAAACTCACGACTTC+AGG | 0.341493 | 6:-62692605 | MsaT032783.1:CDS |
GAATGTTCTTGCTCAAGTTT+GGG | 0.347471 | 6:-62692648 | MsaT032783.1:CDS |
TAAAGGTGGTAGAGCTATAT+GGG | 0.350011 | 6:+62692748 | None:intergenic |
GATGAATCCTTGAAGCTTCT+AGG | 0.354814 | 6:+62689426 | None:intergenic |
CACGGTGTTGAAGGAGCATT+TGG | 0.358152 | 6:-62689704 | MsaT032783.1:CDS |
AATTTAGTAGATTGAATAAT+CGG | 0.359252 | 6:+62690512 | None:intergenic |
CAGATTCGCTTCATTGTAGT+TGG | 0.362535 | 6:+62689818 | None:intergenic |
GGAAGCTCGGTTGAGAGCTC+GGG | 0.369901 | 6:-62689065 | MsaT032783.1:CDS |
GATCACAACATTGCAGCTTC+AGG | 0.377518 | 6:-62694262 | MsaT032783.1:intron |
TGAAACTCATAATTTACCTT+TGG | 0.388107 | 6:-62691092 | MsaT032783.1:CDS |
GATGAAGATTGTGACTATAA+AGG | 0.392208 | 6:-62689333 | MsaT032783.1:CDS |
TGGAAGCTCGGTTGAGAGCT+CGG | 0.395850 | 6:-62689066 | MsaT032783.1:CDS |
GGGTTTGTTAGGATCAATAT+TGG | 0.397430 | 6:-62690657 | MsaT032783.1:CDS |
TTAAAGGAACCAGCAGCAAT+AGG | 0.398705 | 6:+62689653 | None:intergenic |
TCAAACTTGTTCGAAGTAGA+AGG | 0.406104 | 6:+62689626 | None:intergenic |
TTATAATGTCCGCGGAACTT+TGG | 0.411117 | 6:-62692378 | MsaT032783.1:CDS |
ATTCTAGTAAAGAGTATTCA+AGG | 0.417663 | 6:-62692418 | MsaT032783.1:CDS |
GCCTTCTCGAAAGATCAAAA+AGG | 0.427695 | 6:-62689771 | MsaT032783.1:CDS |
TATCAGGAAGCAACATTATC+CGG | 0.428263 | 6:-62689118 | MsaT032783.1:CDS |
TGAACATTAGGAGTCCATTC+AGG | 0.428488 | 6:+62692446 | None:intergenic |
CCTTGCAGGCAGTAAATTTG+AGG | 0.428965 | 6:-62691743 | MsaT032783.1:intron |
CTCAACCGAGCTTCCAAGAA+TGG | 0.432722 | 6:+62689073 | None:intergenic |
CAACAAGGTCAAGGAGTTGC+CGG | 0.440323 | 6:-62690884 | MsaT032783.1:CDS |
AGCATGTGATGCAGATTTGC+AGG | 0.441692 | 6:-62689162 | MsaT032783.1:CDS |
TCAGAACCTCAAGAACCATT+TGG | 0.443751 | 6:-62689533 | MsaT032783.1:CDS |
CATTTGCATATGAACAAAAT+CGG | 0.447369 | 6:+62689394 | None:intergenic |
ATAGGGAGTGTGCTTGTACT+TGG | 0.448459 | 6:+62689671 | None:intergenic |
TTTGTCCATTCTTGGAAGCT+CGG | 0.456709 | 6:-62689078 | MsaT032783.1:CDS |
TGTTGAAGGAGCATTTGGTT+TGG | 0.459032 | 6:-62689699 | MsaT032783.1:CDS |
TGCTTCTGGCGTTGAACTTG+AGG | 0.461662 | 6:-62690600 | MsaT032783.1:CDS |
TCCAAAATAACATCTGTTGA+AGG | 0.462313 | 6:+62689458 | None:intergenic |
CAGAAGCAACCTTAAGACTT+TGG | 0.464919 | 6:+62690615 | None:intergenic |
GAATCGGTCCACGGTGTTGA+AGG | 0.465822 | 6:-62689713 | MsaT032783.1:CDS |
ATCAGGTCCTAGAAGCTTCA+AGG | 0.470331 | 6:-62689433 | MsaT032783.1:CDS |
TCGATTAGCATTCCTCCAAA+TGG | 0.471421 | 6:+62689518 | None:intergenic |
TTCAATCACACATTTGAGCT+TGG | 0.474964 | 6:+62689733 | None:intergenic |
TTCTGTCGTGATTGATCTAG+TGG | 0.475848 | 6:+62690443 | None:intergenic |
CTATGTGCATCGAGAACAAA+TGG | 0.477972 | 6:+62692578 | None:intergenic |
GGCACTCCCTCCTCCATATC+CGG | 0.479812 | 6:+62690464 | None:intergenic |
ATGAGAGCATAGTGTACTAA+AGG | 0.480498 | 6:+62690794 | None:intergenic |
CACAAACATGGGTTCCATGC+AGG | 0.482327 | 6:-62691069 | MsaT032783.1:CDS |
ATAGTGTACTAAAGGGTAAT+CGG | 0.483148 | 6:+62690802 | None:intergenic |
TCGTTCTTCTTAGGTTCTGA+TGG | 0.484619 | 6:+62689578 | None:intergenic |
TTCAGCAGAAGTTACCTGAA+TGG | 0.484930 | 6:-62692460 | MsaT032783.1:CDS |
TCACAAAATTTATTGATACT+AGG | 0.487471 | 6:+62690686 | None:intergenic |
ATACCGACTTCCGTTCCTCA+CGG | 0.490903 | 6:+62692622 | None:intergenic |
TTGCCGGTGTTTGAACCTCC+AGG | 0.491680 | 6:-62692353 | MsaT032783.1:CDS |
TGATGATCAAGAGTGGATAT+TGG | 0.499118 | 6:-62689186 | MsaT032783.1:CDS |
TAAAGGAACCAGCAGCAATA+GGG | 0.499720 | 6:+62689654 | None:intergenic |
CATATAGAGATGATATCATA+AGG | 0.502450 | 6:-62689307 | MsaT032783.1:CDS |
TAGTACATAATCATCACTTC+CGG | 0.503376 | 6:+62690724 | None:intergenic |
TTATTTCAGTGGGAGTCTAA+AGG | 0.508493 | 6:-62690255 | MsaT032783.1:CDS |
ACAATCATGTGTTGCTGTGT+TGG | 0.509780 | 6:-62692330 | MsaT032783.1:CDS |
TTGGTTTCAGTCTTCAAGGA+AGG | 0.509934 | 6:+62690344 | None:intergenic |
ATTTACCTTTGGCACAAACA+TGG | 0.510573 | 6:-62691081 | MsaT032783.1:CDS |
GATCTTTCGAGAAGGCCAAC+GGG | 0.510978 | 6:+62689778 | None:intergenic |
AGAAAATGAACATACCTCCT+AGG | 0.514035 | 6:+62690219 | None:intergenic |
TTTGGAGCATCCATACAGTC+AGG | 0.519675 | 6:-62691709 | MsaT032783.1:intron |
GGCGTTGAACTTGAGGAGGA+TGG | 0.522989 | 6:-62690593 | MsaT032783.1:CDS |
GTTCTCGATGCACATAGTAA+TGG | 0.524193 | 6:-62692572 | MsaT032783.1:CDS |
TGAGAGCATAGTGTACTAAA+GGG | 0.524506 | 6:+62690795 | None:intergenic |
AAAGTCAATATCATAATCCA+TGG | 0.524649 | 6:+62694390 | None:intergenic |
GCTCAAATGTGTGATTGAAT+CGG | 0.524972 | 6:-62689729 | MsaT032783.1:CDS |
TACCGACTTCCGTTCCTCAC+GGG | 0.526382 | 6:+62692623 | None:intergenic |
GGAACCCATGTTTGTGCCAA+AGG | 0.526754 | 6:+62691076 | None:intergenic |
TTCTTTGAACTGTGGCATTG+TGG | 0.528686 | 6:-62689276 | MsaT032783.1:CDS |
CTACAATGAAGCGAATCTGC+AGG | 0.533175 | 6:-62689814 | MsaT032783.1:CDS |
TGGTTTCAGTCTTCAAGGAA+GGG | 0.536716 | 6:+62690345 | None:intergenic |
GATGTTCAACACATGCATCA+TGG | 0.537711 | 6:+62690912 | None:intergenic |
TTTACCTTTGGCACAAACAT+GGG | 0.539885 | 6:-62691080 | MsaT032783.1:CDS |
AAAGACTGAAACTAGAGGTA+GGG | 0.540963 | 6:-62689232 | MsaT032783.1:CDS |
TTCTGGCGTTGAACTTGAGG+AGG | 0.543428 | 6:-62690597 | MsaT032783.1:CDS |
CTCAAGTTTGGGCGCCCGTG+AGG | 0.544969 | 6:-62692637 | MsaT032783.1:CDS |
TGATGGCATTATGCTTAATG+AGG | 0.545096 | 6:+62689595 | None:intergenic |
TGTCAATATCTCCAAAATCT+CGG | 0.545224 | 6:+62691123 | None:intergenic |
AGCACACTCCCTATTGCTGC+TGG | 0.545790 | 6:-62689662 | MsaT032783.1:CDS |
ATTCCTCCAAATGGTTCTTG+AGG | 0.546024 | 6:+62689527 | None:intergenic |
ACATGGTTATTGCCTAATCA+AGG | 0.549443 | 6:-62692717 | MsaT032783.1:CDS |
TAAATGGAACAGTTCATTCG+AGG | 0.550878 | 6:-62690547 | MsaT032783.1:CDS |
GATTAACTATGCTCCTGAAG+TGG | 0.553438 | 6:-62692285 | MsaT032783.1:CDS |
AAAAGACTGAAACTAGAGGT+AGG | 0.555056 | 6:-62689233 | MsaT032783.1:CDS |
GTCTTGCAAGATTATTTCAG+TGG | 0.557527 | 6:-62690266 | MsaT032783.1:CDS |
TGATCTTTCGAGAAGGCCAA+CGG | 0.557990 | 6:+62689777 | None:intergenic |
TCACAAAACATGTGTTTCTG+TGG | 0.558067 | 6:-62690848 | MsaT032783.1:CDS |
TGATTAGGCAATAACCATGT+GGG | 0.558445 | 6:+62692720 | None:intergenic |
TGCCTCGCCGGATATGGAGG+AGG | 0.561475 | 6:-62690471 | MsaT032783.1:CDS |
CGCCCGTGAGGAACGGAAGT+CGG | 0.562164 | 6:-62692625 | MsaT032783.1:CDS |
GCATTATGCTTAATGAGGTA+TGG | 0.563307 | 6:+62689600 | None:intergenic |
TGCAGATTTGCAGGAGTGCA+TGG | 0.563685 | 6:-62689153 | MsaT032783.1:CDS |
ACAGCAACACATGATTGTCC+TGG | 0.563896 | 6:+62692335 | None:intergenic |
TAGACATGATGATGCCTCGC+CGG | 0.566773 | 6:-62690483 | MsaT032783.1:CDS |
AAGACTGAAACTAGAGGTAG+GGG | 0.567055 | 6:-62689231 | MsaT032783.1:CDS |
GTTTGGGCGCCCGTGAGGAA+CGG | 0.567751 | 6:-62692632 | MsaT032783.1:CDS |
TAAAGTCTGCAAAGCACTTG+AGG | 0.568169 | 6:-62692261 | MsaT032783.1:intron |
GAAGCTCGGTTGAGAGCTCG+GGG | 0.572404 | 6:-62689064 | MsaT032783.1:CDS |
TCTTGCAAGATTATTTCAGT+GGG | 0.573681 | 6:-62690265 | MsaT032783.1:CDS |
AAGGATGCTGCAAAGAGCCT+AGG | 0.585131 | 6:-62690236 | MsaT032783.1:CDS |
CAAAATTTATTGATACTAGG+AGG | 0.585345 | 6:+62690689 | None:intergenic |
ATTTGAGCTTGGACAGCGAA+CGG | 0.585917 | 6:+62689744 | None:intergenic |
TGTTTACAAAGTTCTCATAC+CGG | 0.592559 | 6:-62690743 | MsaT032783.1:CDS |
GAACCTCAAGAACCATTTGG+AGG | 0.595264 | 6:-62689530 | MsaT032783.1:CDS |
AAATATCATGCACAACAAGC+CGG | 0.597148 | 6:+62689099 | None:intergenic |
TCATATGCAAATGCAGCACA+TGG | 0.598418 | 6:-62689384 | MsaT032783.1:CDS |
ATTTGGATGATGATCAAGAG+TGG | 0.598828 | 6:-62689193 | MsaT032783.1:CDS |
GGACATTATAATGCAGAGCA+TGG | 0.609549 | 6:+62692390 | None:intergenic |
GTGCATCGAGAACAAATGGT+TGG | 0.611524 | 6:+62692582 | None:intergenic |
TATCGTAGATTCTCACACAT+GGG | 0.612412 | 6:-62690939 | MsaT032783.1:CDS |
TTTAGGGTTTCTTTGAACTG+TGG | 0.615467 | 6:-62689284 | MsaT032783.1:CDS |
TGATGCCTCGCCGGATATGG+AGG | 0.619277 | 6:-62690474 | MsaT032783.1:CDS |
GAGTTAGATACATGATCCAA+AGG | 0.619901 | 6:+62694355 | None:intergenic |
GCCTCGCCGGATATGGAGGA+GGG | 0.620542 | 6:-62690470 | MsaT032783.1:CDS |
GGCAGCACGGAATATCCCGT+TGG | 0.622543 | 6:-62689793 | MsaT032783.1:CDS |
GATGCTGCAAAGAGCCTAGG+AGG | 0.625305 | 6:-62690233 | MsaT032783.1:intron |
ATATCGTAGATTCTCACACA+TGG | 0.626299 | 6:-62690940 | MsaT032783.1:CDS |
TCCCTCCTCCATATCCGGCG+AGG | 0.628096 | 6:+62690469 | None:intergenic |
CCACCTTTACAAAACCCACA+TGG | 0.631339 | 6:-62692734 | MsaT032783.1:CDS |
AAGCGAATCTGCAGGCAGCA+CGG | 0.638097 | 6:-62689806 | MsaT032783.1:CDS |
TACGATATAGAATGCTACCT+CGG | 0.638751 | 6:+62690955 | None:intergenic |
TTGATTAGGCAATAACCATG+TGG | 0.639504 | 6:+62692719 | None:intergenic |
ATCGTAGATTCTCACACATG+GGG | 0.639954 | 6:-62690938 | MsaT032783.1:CDS |
TTTGGAGGAATGCTAATCGA+AGG | 0.641496 | 6:-62689515 | MsaT032783.1:CDS |
TGTCCTGGAGGTTCAAACAC+CGG | 0.651803 | 6:+62692350 | None:intergenic |
AAAACACTTCTATGCCTGCA+TGG | 0.651967 | 6:+62691055 | None:intergenic |
CCGGCAAAGCCAAAGTTCCG+CGG | 0.659988 | 6:+62692369 | None:intergenic |
CATCACTTACAACAAGGTCA+AGG | 0.666531 | 6:-62690893 | MsaT032783.1:CDS |
TGCTAAAAGACTGAAACTAG+AGG | 0.668005 | 6:-62689237 | MsaT032783.1:CDS |
ATATGAACAAAATCGGAACA+TGG | 0.669337 | 6:+62689401 | None:intergenic |
GCAACACATGATTGTCCTGG+AGG | 0.677274 | 6:+62692338 | None:intergenic |
TGTGTGATTGAATCGGTCCA+CGG | 0.682338 | 6:-62689722 | MsaT032783.1:CDS |
GCTCTGCATTATAATGTCCG+CGG | 0.700570 | 6:-62692386 | MsaT032783.1:CDS |
AGTTTGCATGTCAATAACCG+AGG | 0.703589 | 6:-62690972 | MsaT032783.1:CDS |
AAACCGTCGTTGAGAAAACG+CGG | 0.713944 | 6:-62690317 | MsaT032783.1:CDS |
TGAACAAAATCGGAACATGG+AGG | 0.716509 | 6:+62689404 | None:intergenic |
TGGCATTGTGGAATTGAGAG+AGG | 0.720051 | 6:-62689264 | MsaT032783.1:CDS |
AAAGGTGGTAGAGCTATATG+GGG | 0.722178 | 6:+62692749 | None:intergenic |
GTTGAACATCACTTACAACA+AGG | 0.722760 | 6:-62690899 | MsaT032783.1:CDS |
CAAATGCTCCTTCAACACCG+TGG | 0.738899 | 6:+62689705 | None:intergenic |
AAGCTCGGTTGAGAGCTCGG+GGG | 0.778694 | 6:-62689063 | MsaT032783.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr6 | gene | 62689058 | 62694482 | 62689058 | ID=MsaG032783 |
Chr6 | mRNA | 62689058 | 62694482 | 62689058 | ID=MsaT032783.1;Parent=MsaG032783 |
Chr6 | exon | 62689058 | 62689845 | 62689058 | ID=MsaT032783.1.exon5;Parent=MsaT032783.1 |
Chr6 | CDS | 62689058 | 62689845 | 62689058 | ID=cds.MsaT032783.1;Parent=MsaT032783.1 |
Chr6 | exon | 62690234 | 62691176 | 62690234 | ID=MsaT032783.1.exon4;Parent=MsaT032783.1 |
Chr6 | CDS | 62690234 | 62691176 | 62690234 | ID=cds.MsaT032783.1;Parent=MsaT032783.1 |
Chr6 | exon | 62691710 | 62691757 | 62691710 | ID=MsaT032783.1.exon3;Parent=MsaT032783.1 |
Chr6 | CDS | 62691710 | 62691757 | 62691710 | ID=cds.MsaT032783.1;Parent=MsaT032783.1 |
Chr6 | exon | 62692262 | 62692836 | 62692262 | ID=MsaT032783.1.exon2;Parent=MsaT032783.1 |
Chr6 | CDS | 62692262 | 62692836 | 62692262 | ID=cds.MsaT032783.1;Parent=MsaT032783.1 |
Chr6 | exon | 62694263 | 62694482 | 62694263 | ID=MsaT032783.1.exon1;Parent=MsaT032783.1 |
Chr6 | CDS | 62694263 | 62694482 | 62694263 | ID=cds.MsaT032783.1;Parent=MsaT032783.1 |
Gene Sequence |
Protein sequence |