Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG033044 | KEH26142.1 | 78.535 | 396 | 45 | 4 | 1 | 365 | 1 | 387 | 0.0 | 610 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG033044 | sp|Q8L9Y3|ARR14_ARATH | 38.996 | 259 | 121 | 5 | 13 | 234 | 6 | 264 | 1.69e-50 | 176 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG033044 | tr|A0A072U908|A0A072U908_MEDTR | 78.535 | 396 | 45 | 4 | 1 | 365 | 1 | 387 | 0.0 | 610 |
Gene ID | Type | Classification |
---|---|---|
MsaG033044 | TR | Others |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG003444 | MsaG033044 | 0.804691 | 3.230050e-49 | 4.861818e-47 |
MsaG017317 | MsaG033044 | 0.806058 | 1.675348e-49 | 2.603477e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG033044 | MtrunA17_Chr6g0471041 | 81.967 | 366 | 48 | 3 | 1 | 357 | 1 | 357 | 0.0 | 601 |
MsaG033044 | MtrunA17_Chr6g0471041 | 62.000 | 100 | 30 | 1 | 266 | 365 | 326 | 417 | 3.82e-28 | 114 |
MsaG033044 | MtrunA17_Chr4g0009851 | 45.981 | 311 | 144 | 7 | 1 | 298 | 1 | 300 | 4.60e-72 | 227 |
MsaG033044 | MtrunA17_Chr4g0009901 | 46.639 | 238 | 122 | 3 | 14 | 249 | 10 | 244 | 6.59e-62 | 199 |
MsaG033044 | MtrunA17_Chr8g0383961 | 48.425 | 254 | 103 | 5 | 1 | 254 | 1 | 226 | 1.66e-60 | 196 |
MsaG033044 | MtrunA17_Chr1g0161431 | 43.580 | 257 | 113 | 4 | 13 | 237 | 10 | 266 | 8.80e-60 | 203 |
MsaG033044 | MtrunA17_Chr4g0009981 | 42.045 | 264 | 126 | 5 | 59 | 302 | 2 | 258 | 1.76e-53 | 177 |
MsaG033044 | MtrunA17_Chr4g0067981 | 38.735 | 253 | 126 | 3 | 13 | 237 | 30 | 281 | 6.84e-50 | 177 |
MsaG033044 | MtrunA17_Chr2g0294911 | 39.113 | 248 | 124 | 3 | 13 | 234 | 28 | 274 | 2.49e-49 | 175 |
MsaG033044 | MtrunA17_Chr8g0376881 | 38.843 | 242 | 121 | 3 | 14 | 228 | 25 | 266 | 2.23e-48 | 171 |
MsaG033044 | MtrunA17_Chr3g0123131 | 38.211 | 246 | 123 | 4 | 12 | 228 | 11 | 256 | 4.54e-48 | 171 |
MsaG033044 | MtrunA17_Chr8g0391911 | 39.574 | 235 | 113 | 4 | 14 | 220 | 9 | 242 | 4.74e-42 | 147 |
MsaG033044 | MtrunA17_Chr3g0137101 | 36.145 | 249 | 126 | 4 | 13 | 228 | 7 | 255 | 2.60e-40 | 150 |
MsaG033044 | MtrunA17_Chr1g0149841 | 36.585 | 246 | 125 | 4 | 13 | 228 | 4 | 248 | 3.19e-39 | 145 |
MsaG033044 | MtrunA17_Chr4g0074411 | 31.159 | 276 | 161 | 3 | 12 | 258 | 16 | 291 | 7.76e-39 | 146 |
MsaG033044 | MtrunA17_Chr4g0074401 | 31.538 | 260 | 146 | 3 | 1 | 228 | 1 | 260 | 5.33e-38 | 143 |
MsaG033044 | MtrunA17_Chr7g0275401 | 33.065 | 248 | 136 | 4 | 13 | 230 | 4 | 251 | 7.44e-37 | 135 |
MsaG033044 | MtrunA17_Chr2g0304841 | 30.682 | 264 | 145 | 3 | 4 | 229 | 8 | 271 | 2.57e-35 | 136 |
MsaG033044 | MtrunA17_Chr3g0134481 | 32.710 | 214 | 111 | 1 | 7 | 220 | 1 | 181 | 6.75e-34 | 124 |
MsaG033044 | MtrunA17_Chr7g0275891 | 31.128 | 257 | 135 | 4 | 13 | 227 | 4 | 260 | 8.40e-32 | 122 |
MsaG033044 | MtrunA17_Chr6g0456631 | 43.125 | 160 | 86 | 4 | 13 | 170 | 8 | 164 | 1.08e-30 | 115 |
MsaG033044 | MtrunA17_Chr1g0149851 | 30.337 | 267 | 142 | 3 | 13 | 235 | 4 | 270 | 2.83e-30 | 121 |
MsaG033044 | MtrunA17_Chr3g0134461 | 33.486 | 218 | 119 | 3 | 7 | 222 | 1 | 194 | 2.34e-29 | 112 |
MsaG033044 | MtrunA17_Chr4g0074421 | 32.597 | 181 | 98 | 2 | 64 | 220 | 2 | 182 | 1.09e-28 | 110 |
MsaG033044 | MtrunA17_Chr4g0011071 | 41.429 | 140 | 74 | 3 | 61 | 195 | 36 | 172 | 2.10e-27 | 106 |
MsaG033044 | MtrunA17_Chr1g0149831 | 33.514 | 185 | 91 | 3 | 73 | 228 | 1 | 182 | 6.37e-26 | 103 |
MsaG033044 | MtrunA17_Chr4g0009991 | 43.220 | 118 | 62 | 2 | 106 | 220 | 1 | 116 | 2.03e-24 | 96.7 |
MsaG033044 | MtrunA17_Chr5g0423031 | 53.086 | 81 | 37 | 1 | 14 | 94 | 10 | 89 | 2.26e-18 | 82.0 |
MsaG033044 | MtrunA17_Chr6g0473731 | 32.192 | 146 | 91 | 1 | 94 | 231 | 10 | 155 | 1.09e-17 | 84.0 |
MsaG033044 | MtrunA17_Chr4g0010001 | 49.383 | 81 | 40 | 1 | 14 | 94 | 10 | 89 | 1.17e-17 | 77.4 |
MsaG033044 | MtrunA17_Chr4g0031961 | 50.704 | 71 | 32 | 1 | 170 | 240 | 130 | 197 | 5.16e-15 | 75.1 |
MsaG033044 | MtrunA17_Chr7g0255711 | 55.932 | 59 | 26 | 0 | 170 | 228 | 90 | 148 | 9.13e-15 | 73.9 |
MsaG033044 | MtrunA17_Chr5g0400241 | 34.109 | 129 | 81 | 2 | 12 | 139 | 12 | 137 | 5.97e-13 | 70.1 |
MsaG033044 | MtrunA17_Chr5g0400241 | 47.273 | 55 | 29 | 0 | 170 | 224 | 310 | 364 | 1.28e-11 | 65.9 |
MsaG033044 | MtrunA17_Chr5g0417521 | 54.545 | 55 | 24 | 1 | 171 | 224 | 15 | 69 | 4.48e-12 | 66.6 |
MsaG033044 | MtrunA17_Chr1g0198601 | 51.667 | 60 | 28 | 1 | 170 | 228 | 210 | 269 | 7.28e-12 | 66.2 |
MsaG033044 | MtrunA17_Chr4g0054981 | 47.273 | 55 | 29 | 0 | 170 | 224 | 309 | 363 | 9.57e-12 | 66.2 |
MsaG033044 | MtrunA17_Chr7g0261911 | 39.080 | 87 | 50 | 2 | 143 | 228 | 236 | 320 | 2.51e-11 | 64.7 |
MsaG033044 | MtrunA17_Chr4g0042451 | 50.909 | 55 | 26 | 1 | 171 | 224 | 17 | 71 | 3.94e-11 | 63.5 |
MsaG033044 | MtrunA17_Chr2g0321461 | 38.043 | 92 | 49 | 3 | 135 | 225 | 16 | 100 | 4.24e-11 | 63.9 |
MsaG033044 | MtrunA17_Chr6g0461641 | 48.214 | 56 | 28 | 1 | 171 | 225 | 42 | 97 | 6.83e-11 | 63.2 |
MsaG033044 | MtrunA17_Chr5g0422621 | 49.180 | 61 | 30 | 1 | 170 | 229 | 197 | 257 | 7.14e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG033044 | AT2G01760.1 | 38.996 | 259 | 121 | 5 | 13 | 234 | 6 | 264 | 1.72e-51 | 176 |
MsaG033044 | AT2G01760.2 | 35.192 | 287 | 121 | 6 | 13 | 234 | 6 | 292 | 1.70e-45 | 161 |
MsaG033044 | AT1G67710.1 | 40.239 | 251 | 118 | 6 | 17 | 236 | 10 | 259 | 1.74e-45 | 163 |
MsaG033044 | AT3G16857.1 | 34.909 | 275 | 130 | 6 | 8 | 234 | 27 | 300 | 1.78e-43 | 160 |
MsaG033044 | AT3G16857.2 | 34.909 | 275 | 130 | 6 | 8 | 234 | 27 | 300 | 2.08e-43 | 160 |
MsaG033044 | AT2G25180.1 | 34.109 | 258 | 144 | 4 | 1 | 233 | 1 | 257 | 2.47e-38 | 145 |
MsaG033044 | AT4G31920.1 | 35.317 | 252 | 148 | 5 | 1 | 238 | 1 | 251 | 1.00e-37 | 142 |
MsaG033044 | AT3G16857.3 | 33.913 | 230 | 105 | 4 | 52 | 234 | 1 | 230 | 2.06e-35 | 137 |
MsaG033044 | AT2G01760.3 | 38.265 | 196 | 84 | 5 | 76 | 234 | 4 | 199 | 1.06e-34 | 130 |
MsaG033044 | AT5G58080.1 | 33.740 | 246 | 138 | 4 | 13 | 234 | 13 | 257 | 2.15e-34 | 134 |
MsaG033044 | AT1G67710.2 | 38.660 | 194 | 89 | 4 | 73 | 236 | 1 | 194 | 2.89e-32 | 126 |
MsaG033044 | AT5G49240.1 | 29.960 | 247 | 143 | 5 | 3 | 220 | 27 | 272 | 4.97e-29 | 114 |
MsaG033044 | AT3G62670.1 | 31.513 | 238 | 131 | 7 | 19 | 229 | 42 | 274 | 2.25e-28 | 115 |
MsaG033044 | AT1G49190.1 | 28.788 | 264 | 153 | 8 | 4 | 234 | 20 | 281 | 9.58e-27 | 110 |
MsaG033044 | AT1G67710.3 | 39.655 | 174 | 75 | 4 | 93 | 236 | 12 | 185 | 3.60e-26 | 109 |
MsaG033044 | AT5G07210.2 | 26.374 | 273 | 136 | 6 | 18 | 231 | 16 | 282 | 4.02e-19 | 89.4 |
MsaG033044 | AT5G07210.1 | 27.731 | 238 | 107 | 6 | 53 | 231 | 59 | 290 | 4.45e-17 | 83.2 |
MsaG033044 | AT5G59570.2 | 41.000 | 100 | 58 | 1 | 134 | 233 | 105 | 203 | 5.96e-16 | 77.8 |
MsaG033044 | AT5G59570.1 | 41.000 | 100 | 58 | 1 | 134 | 233 | 105 | 203 | 5.96e-16 | 77.8 |
MsaG033044 | AT3G46640.2 | 52.113 | 71 | 31 | 1 | 170 | 240 | 143 | 210 | 1.46e-15 | 77.0 |
MsaG033044 | AT3G46640.1 | 52.113 | 71 | 31 | 1 | 170 | 240 | 143 | 210 | 1.46e-15 | 77.0 |
MsaG033044 | AT3G46640.3 | 52.113 | 71 | 31 | 1 | 170 | 240 | 143 | 210 | 2.17e-15 | 76.6 |
MsaG033044 | AT5G05090.1 | 55.932 | 59 | 26 | 0 | 170 | 228 | 80 | 138 | 7.72e-15 | 74.3 |
MsaG033044 | AT2G40970.1 | 54.237 | 59 | 27 | 0 | 170 | 228 | 104 | 162 | 8.04e-15 | 73.9 |
MsaG033044 | AT3G10760.1 | 55.932 | 59 | 26 | 0 | 170 | 228 | 104 | 162 | 9.75e-15 | 74.7 |
MsaG033044 | AT1G49190.2 | 28.889 | 135 | 96 | 0 | 4 | 138 | 20 | 154 | 4.64e-14 | 73.9 |
MsaG033044 | AT2G27070.1 | 52.381 | 63 | 29 | 1 | 166 | 228 | 221 | 282 | 9.05e-14 | 72.8 |
MsaG033044 | AT3G04030.1 | 53.571 | 56 | 25 | 1 | 171 | 225 | 45 | 100 | 9.02e-12 | 66.2 |
MsaG033044 | AT3G04030.3 | 53.571 | 56 | 25 | 1 | 171 | 225 | 45 | 100 | 9.47e-12 | 66.2 |
MsaG033044 | AT3G04030.2 | 50.909 | 55 | 27 | 0 | 171 | 225 | 45 | 99 | 1.21e-11 | 65.9 |
MsaG033044 | AT5G18240.2 | 53.571 | 56 | 25 | 1 | 171 | 225 | 45 | 100 | 1.51e-11 | 65.9 |
MsaG033044 | AT5G18240.3 | 53.571 | 56 | 25 | 1 | 171 | 225 | 45 | 100 | 1.51e-11 | 65.9 |
MsaG033044 | AT5G18240.5 | 53.571 | 56 | 25 | 1 | 171 | 225 | 45 | 100 | 1.60e-11 | 65.5 |
MsaG033044 | AT5G18240.1 | 53.571 | 56 | 25 | 1 | 171 | 225 | 45 | 100 | 1.67e-11 | 65.5 |
MsaG033044 | AT5G18240.4 | 53.571 | 56 | 25 | 1 | 171 | 225 | 45 | 100 | 1.67e-11 | 65.5 |
MsaG033044 | AT5G44190.1 | 48.148 | 54 | 28 | 0 | 170 | 223 | 146 | 199 | 2.14e-11 | 65.1 |
MsaG033044 | AT5G44190.2 | 48.148 | 54 | 28 | 0 | 170 | 223 | 146 | 199 | 2.49e-11 | 64.7 |
Find 48 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACAATTCTTAGAGGGTTTA+AGG | 0.118099 | 6:+74458889 | MsaT033044.1:CDS |
CTAAGGGCTGTGAATCAATT+TGG | 0.229550 | 6:+74459801 | MsaT033044.1:CDS |
CAATGCATCAAGAATTTCTA+AGG | 0.275756 | 6:+74459784 | MsaT033044.1:CDS |
GCATATTGCTAGCCATTTAC+AGG | 0.279083 | 6:+74459980 | MsaT033044.1:CDS |
CCCGTTTGCAATAGCCTTCA+TGG | 0.290834 | 6:-74459562 | None:intergenic |
TCCACAACATTCATCAAAAT+TGG | 0.291775 | 6:+74461343 | MsaT033044.1:CDS |
ACTTCCCCAACAATTCTTAG+AGG | 0.375785 | 6:+74458881 | MsaT033044.1:CDS |
TGACAGGAATATTGATTTGT+TGG | 0.378211 | 6:-74459237 | None:intergenic |
GATCAAATTCATGTTGATAA+TGG | 0.381612 | 6:+74459678 | MsaT033044.1:CDS |
TAAACCCTCTAAGAATTGTT+GGG | 0.382270 | 6:-74458886 | None:intergenic |
ACAATTCTTAGAGGGTTTAA+GGG | 0.385698 | 6:+74458890 | MsaT033044.1:CDS |
TGATTTGTTGGGTAATTTGT+TGG | 0.402510 | 6:-74459225 | None:intergenic |
ATTCAAGTGATGAATGTTCC+TGG | 0.409770 | 6:+74459945 | MsaT033044.1:CDS |
TTAAACCCTCTAAGAATTGT+TGG | 0.427205 | 6:-74458887 | None:intergenic |
GCCATCGTTGAAAAGTCAAT+TGG | 0.430946 | 6:+74458948 | MsaT033044.1:CDS |
GACAGGAATATTGATTTGTT+GGG | 0.435755 | 6:-74459236 | None:intergenic |
AATTTGTTGGAGAAAATCAT+AGG | 0.440238 | 6:-74459212 | None:intergenic |
CCATGAAGGCTATTGCAAAC+GGG | 0.441100 | 6:+74459562 | MsaT033044.1:CDS |
AGACTGATCAGTAAAATTGT+TGG | 0.443399 | 6:-74461456 | None:intergenic |
TGTGCAGTGATGGGTGTTGA+TGG | 0.445400 | 6:+74459525 | MsaT033044.1:intron |
TCCATGAAGGCTATTGCAAA+CGG | 0.446848 | 6:+74459561 | MsaT033044.1:CDS |
AACGATGGCATTGTGGATAG+TGG | 0.451069 | 6:-74458934 | None:intergenic |
TTATTGTCACATTGTATGAC+TGG | 0.461320 | 6:-74461311 | None:intergenic |
AATTGAGACTTACTTTAAAG+AGG | 0.462807 | 6:+74461165 | MsaT033044.1:CDS |
TTCAAAACATTAGACTGATC+AGG | 0.466345 | 6:-74461377 | None:intergenic |
TTGCTTGAGACCATGTTAAA+CGG | 0.467130 | 6:-74459764 | None:intergenic |
GGCAAAGAATCTTACTATCA+AGG | 0.473824 | 6:-74459824 | None:intergenic |
AATGGCTCTTTCAACTGAGA+TGG | 0.494149 | 6:+74458854 | None:intergenic |
TCATGTTGATGTGGTTGAAA+AGG | 0.515561 | 6:+74459713 | MsaT033044.1:CDS |
TATATGTTCTTACTAATGAC+AGG | 0.536013 | 6:-74459253 | None:intergenic |
TTAAAGAATGAAATACCAAA+AGG | 0.536683 | 6:+74461206 | MsaT033044.1:CDS |
CTCATCACCTGGATTCATGT+TGG | 0.553676 | 6:-74461567 | None:intergenic |
CTTCCCCAACAATTCTTAGA+GGG | 0.553790 | 6:+74458882 | MsaT033044.1:CDS |
ACATGTGCAAACACGTTCCA+AGG | 0.562980 | 6:+74459631 | MsaT033044.1:CDS |
CAATTAAAGAACTCATCACC+TGG | 0.565714 | 6:-74461578 | None:intergenic |
TCAATTGGATGGAATTACAA+AGG | 0.566461 | 6:+74458963 | MsaT033044.1:CDS |
TTGATTAGGTCATCACTCAA+AGG | 0.569533 | 6:-74459606 | None:intergenic |
GATCAGTCCAACATGAATCC+AGG | 0.574425 | 6:+74461560 | MsaT033044.1:CDS |
ATGAAATACCAAAAGGTGAG+TGG | 0.583760 | 6:+74461213 | MsaT033044.1:CDS |
ATCAACAAGTGCATCCATGA+AGG | 0.588196 | 6:+74459548 | MsaT033044.1:CDS |
TCGTTGAAAAGTCAATTGGA+TGG | 0.597816 | 6:+74458952 | MsaT033044.1:CDS |
AAACCCTCTAAGAATTGTTG+GGG | 0.603847 | 6:-74458885 | None:intergenic |
AAAAGAAGCATTAGAGCATG+TGG | 0.613637 | 6:-74459113 | None:intergenic |
AATGCATCAAGAATTTCTAA+GGG | 0.619626 | 6:+74459785 | MsaT033044.1:CDS |
AAAAGAATCTCATGTTGATG+TGG | 0.621750 | 6:+74459704 | MsaT033044.1:CDS |
GTGAATGTCGGTGAATGTTG+TGG | 0.625497 | 6:-74461524 | None:intergenic |
CATGAAGGCTATTGCAAACG+GGG | 0.626135 | 6:+74459563 | MsaT033044.1:CDS |
ATATGCTCTCTTGTCAAACC+AGG | 0.644357 | 6:-74459963 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr6 | gene | 74458855 | 74461601 | 74458855 | ID=MsaG033044 |
Chr6 | mRNA | 74458855 | 74461601 | 74458855 | ID=MsaT033044.1;Parent=MsaG033044 |
Chr6 | exon | 74458855 | 74458984 | 74458855 | ID=MsaT033044.1.exon1;Parent=MsaT033044.1 |
Chr6 | CDS | 74458855 | 74458984 | 74458855 | ID=cds.MsaT033044.1;Parent=MsaT033044.1 |
Chr6 | exon | 74459110 | 74459262 | 74459110 | ID=MsaT033044.1.exon2;Parent=MsaT033044.1 |
Chr6 | CDS | 74459110 | 74459262 | 74459110 | ID=cds.MsaT033044.1;Parent=MsaT033044.1 |
Chr6 | exon | 74459532 | 74459831 | 74459532 | ID=MsaT033044.1.exon3;Parent=MsaT033044.1 |
Chr6 | CDS | 74459532 | 74459831 | 74459532 | ID=cds.MsaT033044.1;Parent=MsaT033044.1 |
Chr6 | exon | 74459925 | 74460001 | 74459925 | ID=MsaT033044.1.exon4;Parent=MsaT033044.1 |
Chr6 | CDS | 74459925 | 74460001 | 74459925 | ID=cds.MsaT033044.1;Parent=MsaT033044.1 |
Chr6 | exon | 74461164 | 74461601 | 74461164 | ID=MsaT033044.1.exon5;Parent=MsaT033044.1 |
Chr6 | CDS | 74461164 | 74461601 | 74461164 | ID=cds.MsaT033044.1;Parent=MsaT033044.1 |
Gene Sequence |
Protein sequence |