Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG033282 | XP_013441872.2 | 68.855 | 594 | 81 | 11 | 1 | 509 | 1 | 575 | 0.0 | 756 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG033282 | sp|Q9ZWJ9|ARR2_ARATH | 37.308 | 260 | 138 | 4 | 6 | 246 | 26 | 279 | 1.83e-46 | 175 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG033282 | tr|A0A072TEW6|A0A072TEW6_MEDTR | 79.830 | 352 | 42 | 2 | 1 | 331 | 1 | 344 | 0.0 | 570 |
Gene ID | Type | Classification |
---|---|---|
MsaG033282 | TR | Others |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG033282 | MtrunA17_Chr6g0473731 | 75.487 | 359 | 46 | 3 | 84 | 408 | 10 | 360 | 0.0 | 529 |
MsaG033282 | MtrunA17_Chr7g0223971 | 52.511 | 219 | 68 | 2 | 86 | 271 | 1 | 216 | 4.97e-65 | 219 |
MsaG033282 | MtrunA17_Chr7g0223971 | 38.346 | 133 | 55 | 4 | 295 | 409 | 296 | 419 | 1.30e-11 | 67.0 |
MsaG033282 | MtrunA17_Chr4g0067981 | 34.276 | 283 | 149 | 4 | 6 | 265 | 33 | 301 | 5.61e-44 | 165 |
MsaG033282 | MtrunA17_Chr3g0123131 | 35.985 | 264 | 152 | 4 | 6 | 252 | 15 | 278 | 7.71e-44 | 163 |
MsaG033282 | MtrunA17_Chr2g0294911 | 34.231 | 260 | 138 | 3 | 6 | 247 | 31 | 275 | 2.82e-43 | 162 |
MsaG033282 | MtrunA17_Chr1g0149841 | 36.929 | 241 | 139 | 1 | 8 | 235 | 9 | 249 | 1.13e-42 | 158 |
MsaG033282 | MtrunA17_Chr1g0161431 | 35.055 | 271 | 154 | 6 | 6 | 255 | 13 | 282 | 5.97e-42 | 158 |
MsaG033282 | MtrunA17_Chr8g0376881 | 35.115 | 262 | 155 | 5 | 6 | 252 | 27 | 288 | 8.24e-41 | 154 |
MsaG033282 | MtrunA17_Chr3g0137101 | 35.918 | 245 | 140 | 3 | 8 | 235 | 12 | 256 | 1.12e-40 | 155 |
MsaG033282 | MtrunA17_Chr7g0275891 | 34.296 | 277 | 147 | 6 | 8 | 255 | 9 | 279 | 3.98e-40 | 148 |
MsaG033282 | MtrunA17_Chr2g0304841 | 34.783 | 253 | 133 | 4 | 8 | 233 | 22 | 269 | 5.40e-37 | 145 |
MsaG033282 | MtrunA17_Chr7g0275401 | 33.197 | 244 | 147 | 3 | 5 | 233 | 6 | 248 | 7.01e-37 | 137 |
MsaG033282 | MtrunA17_Chr1g0149851 | 35.039 | 254 | 137 | 3 | 8 | 233 | 9 | 262 | 3.34e-36 | 141 |
MsaG033282 | MtrunA17_Chr4g0074401 | 33.891 | 239 | 145 | 2 | 8 | 233 | 21 | 259 | 1.72e-35 | 139 |
MsaG033282 | MtrunA17_Chr4g0074411 | 34.728 | 239 | 140 | 3 | 8 | 233 | 22 | 257 | 1.74e-35 | 140 |
MsaG033282 | MtrunA17_Chr6g0471041 | 33.190 | 232 | 138 | 3 | 9 | 239 | 19 | 234 | 5.42e-34 | 132 |
MsaG033282 | MtrunA17_Chr4g0009851 | 30.924 | 249 | 155 | 4 | 8 | 254 | 15 | 248 | 6.29e-33 | 127 |
MsaG033282 | MtrunA17_Chr4g0009901 | 30.263 | 228 | 144 | 4 | 6 | 233 | 12 | 224 | 5.97e-30 | 118 |
MsaG033282 | MtrunA17_Chr4g0074421 | 35.263 | 190 | 99 | 5 | 53 | 226 | 1 | 182 | 3.61e-29 | 114 |
MsaG033282 | MtrunA17_Chr4g0009981 | 31.731 | 208 | 118 | 5 | 53 | 254 | 6 | 195 | 5.31e-29 | 115 |
MsaG033282 | MtrunA17_Chr3g0134461 | 31.982 | 222 | 107 | 3 | 8 | 226 | 12 | 192 | 2.58e-28 | 111 |
MsaG033282 | MtrunA17_Chr3g0134481 | 30.137 | 219 | 104 | 1 | 8 | 226 | 12 | 181 | 3.35e-28 | 110 |
MsaG033282 | MtrunA17_Chr1g0149831 | 34.973 | 183 | 103 | 2 | 66 | 235 | 4 | 183 | 3.47e-27 | 109 |
MsaG033282 | MtrunA17_Chr8g0391911 | 29.388 | 245 | 136 | 7 | 6 | 226 | 11 | 242 | 1.32e-18 | 85.5 |
MsaG033282 | MtrunA17_Chr4g0031961 | 49.412 | 85 | 34 | 2 | 174 | 255 | 128 | 206 | 1.03e-17 | 84.0 |
MsaG033282 | MtrunA17_Chr7g0255711 | 54.839 | 62 | 28 | 0 | 175 | 236 | 89 | 150 | 4.69e-17 | 82.0 |
MsaG033282 | MtrunA17_Chr4g0009991 | 32.061 | 131 | 70 | 3 | 98 | 226 | 3 | 116 | 5.34e-14 | 68.9 |
MsaG033282 | MtrunA17_Chr7g0223991 | 35.204 | 196 | 73 | 8 | 244 | 388 | 24 | 216 | 2.95e-13 | 69.3 |
MsaG033282 | MtrunA17_Chr4g0011071 | 25.490 | 153 | 100 | 3 | 51 | 203 | 36 | 174 | 1.22e-12 | 66.2 |
MsaG033282 | MtrunA17_Chr5g0400241 | 46.667 | 60 | 32 | 0 | 176 | 235 | 310 | 369 | 1.12e-11 | 67.0 |
MsaG033282 | MtrunA17_Chr4g0040481 | 42.647 | 68 | 39 | 0 | 176 | 243 | 157 | 224 | 2.24e-11 | 65.9 |
MsaG033282 | MtrunA17_Chr2g0324891 | 43.836 | 73 | 40 | 1 | 176 | 247 | 160 | 232 | 4.43e-11 | 65.1 |
MsaG033282 | MtrunA17_Chr1g0198601 | 43.243 | 74 | 41 | 1 | 176 | 248 | 210 | 283 | 5.25e-11 | 64.3 |
MsaG033282 | MtrunA17_Chr4g0054981 | 44.444 | 63 | 35 | 0 | 176 | 238 | 309 | 371 | 5.72e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG033282 | AT3G16857.1 | 32.095 | 296 | 157 | 4 | 6 | 263 | 35 | 324 | 1.17e-43 | 164 |
MsaG033282 | AT3G16857.2 | 32.095 | 296 | 157 | 4 | 6 | 263 | 35 | 324 | 1.35e-43 | 164 |
MsaG033282 | AT2G01760.1 | 37.097 | 248 | 136 | 3 | 6 | 233 | 9 | 256 | 9.68e-43 | 156 |
MsaG033282 | AT5G07210.2 | 36.678 | 289 | 134 | 7 | 8 | 253 | 16 | 298 | 1.15e-41 | 158 |
MsaG033282 | AT4G31920.1 | 34.959 | 246 | 156 | 2 | 8 | 253 | 17 | 258 | 4.19e-39 | 150 |
MsaG033282 | AT5G07210.1 | 35.690 | 297 | 134 | 8 | 8 | 253 | 16 | 306 | 4.22e-39 | 150 |
MsaG033282 | AT3G16857.3 | 31.660 | 259 | 133 | 4 | 43 | 263 | 2 | 254 | 1.12e-37 | 146 |
MsaG033282 | AT2G01760.2 | 33.333 | 276 | 136 | 4 | 6 | 233 | 9 | 284 | 8.70e-37 | 140 |
MsaG033282 | AT2G25180.1 | 37.395 | 238 | 138 | 4 | 8 | 235 | 17 | 253 | 1.04e-36 | 144 |
MsaG033282 | AT2G27070.1 | 35.395 | 291 | 138 | 7 | 8 | 253 | 16 | 301 | 3.64e-35 | 139 |
MsaG033282 | AT5G58080.1 | 34.583 | 240 | 144 | 3 | 8 | 237 | 18 | 254 | 4.00e-35 | 139 |
MsaG033282 | AT1G67710.1 | 35.938 | 256 | 144 | 7 | 8 | 244 | 11 | 265 | 3.14e-33 | 132 |
MsaG033282 | AT2G01760.3 | 37.566 | 189 | 98 | 3 | 65 | 233 | 3 | 191 | 1.76e-30 | 121 |
MsaG033282 | AT5G49240.1 | 32.468 | 231 | 144 | 2 | 8 | 226 | 42 | 272 | 1.20e-29 | 118 |
MsaG033282 | AT1G49190.1 | 31.200 | 250 | 148 | 6 | 7 | 236 | 33 | 278 | 2.77e-28 | 117 |
MsaG033282 | AT3G62670.1 | 30.603 | 232 | 145 | 6 | 9 | 229 | 42 | 268 | 8.37e-27 | 112 |
MsaG033282 | AT1G67710.2 | 35.922 | 206 | 112 | 7 | 66 | 252 | 4 | 208 | 2.38e-23 | 103 |
MsaG033282 | AT1G67710.3 | 35.602 | 191 | 103 | 7 | 73 | 244 | 2 | 191 | 4.34e-19 | 90.1 |
MsaG033282 | AT3G46640.2 | 46.512 | 86 | 42 | 1 | 174 | 259 | 141 | 222 | 4.20e-18 | 85.9 |
MsaG033282 | AT3G46640.1 | 46.512 | 86 | 42 | 1 | 174 | 259 | 141 | 222 | 4.20e-18 | 85.9 |
MsaG033282 | AT3G46640.3 | 46.512 | 86 | 42 | 1 | 174 | 259 | 141 | 222 | 4.58e-18 | 85.9 |
MsaG033282 | AT5G59570.2 | 55.738 | 61 | 27 | 0 | 176 | 236 | 140 | 200 | 4.72e-18 | 85.1 |
MsaG033282 | AT5G59570.1 | 55.738 | 61 | 27 | 0 | 176 | 236 | 140 | 200 | 4.72e-18 | 85.1 |
MsaG033282 | AT3G10760.1 | 43.158 | 95 | 46 | 1 | 150 | 236 | 70 | 164 | 6.78e-18 | 85.5 |
MsaG033282 | AT2G40970.1 | 45.122 | 82 | 45 | 0 | 175 | 256 | 103 | 184 | 5.81e-17 | 80.9 |
MsaG033282 | AT5G05090.1 | 52.381 | 63 | 30 | 0 | 174 | 236 | 78 | 140 | 6.29e-17 | 81.3 |
MsaG033282 | AT1G49190.2 | 26.064 | 188 | 115 | 3 | 7 | 187 | 33 | 203 | 1.50e-15 | 80.1 |
MsaG033282 | AT5G44190.2 | 47.143 | 70 | 37 | 0 | 174 | 243 | 144 | 213 | 6.56e-14 | 73.6 |
MsaG033282 | AT5G44190.1 | 46.575 | 73 | 39 | 0 | 171 | 243 | 141 | 213 | 7.34e-14 | 73.6 |
MsaG033282 | AT3G04030.2 | 44.615 | 65 | 32 | 1 | 170 | 230 | 34 | 98 | 3.16e-12 | 68.6 |
MsaG033282 | AT5G61380.1 | 25.974 | 154 | 104 | 2 | 4 | 147 | 15 | 168 | 4.83e-12 | 68.9 |
MsaG033282 | AT5G18240.2 | 45.455 | 66 | 31 | 2 | 170 | 230 | 34 | 99 | 1.95e-11 | 66.2 |
MsaG033282 | AT5G18240.3 | 45.455 | 66 | 31 | 2 | 170 | 230 | 34 | 99 | 1.95e-11 | 66.2 |
MsaG033282 | AT5G18240.5 | 45.455 | 66 | 31 | 2 | 170 | 230 | 34 | 99 | 2.20e-11 | 66.2 |
MsaG033282 | AT5G18240.1 | 45.455 | 66 | 31 | 2 | 170 | 230 | 34 | 99 | 2.30e-11 | 66.2 |
MsaG033282 | AT5G18240.4 | 45.455 | 66 | 31 | 2 | 170 | 230 | 34 | 99 | 2.30e-11 | 66.2 |
MsaG033282 | AT2G20570.1 | 45.455 | 66 | 36 | 0 | 176 | 241 | 152 | 217 | 6.09e-11 | 64.7 |
Find 93 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCAGTGAGTTTCATATATT+TGG | 0.074139 | 6:-81888419 | MsaT033282.1:CDS |
CCATATAGCTTTGGGTTTAA+TGG | 0.190557 | 6:-81886233 | MsaT033282.1:CDS |
ACTCATCTTGAATTTGCTTT+TGG | 0.194034 | 6:+81888378 | None:intergenic |
TCGTTCAATCATTTCAATTA+TGG | 0.195385 | 6:-81886350 | MsaT033282.1:CDS |
TTAACAAGGAACTTAAAATT+TGG | 0.202387 | 6:-81886413 | MsaT033282.1:CDS |
ATTTCATTGATGACAGAAAT+TGG | 0.248135 | 6:+81886644 | None:intergenic |
GAATTTGATATGGATCTTAT+TGG | 0.253348 | 6:-81885135 | MsaT033282.1:CDS |
GAATTTGATATGGATCTTAT+TGG | 0.253348 | 6:-81885165 | MsaT033282.1:CDS |
GAGTTTCAACTACCTGTTAT+AGG | 0.281021 | 6:-81888359 | MsaT033282.1:intron |
CAGATCCAACATGCAAGTTT+TGG | 0.289471 | 6:-81890062 | MsaT033282.1:CDS |
AATAATACAGGAATTTGATA+TGG | 0.299307 | 6:-81885175 | MsaT033282.1:intron |
GTAGAAGCGCCATCATAAAA+TGG | 0.300930 | 6:+81886500 | None:intergenic |
AAATGTATCCAGTCATTTAC+AGG | 0.301898 | 6:-81887278 | MsaT033282.1:intron |
TGGAGATCAGGAATTTGATA+TGG | 0.318761 | 6:-81885145 | MsaT033282.1:CDS |
CCATTAAACCCAAAGCTATA+TGG | 0.320064 | 6:+81886233 | None:intergenic |
TTAAGAAACCAAGGCTTGTT+TGG | 0.322427 | 6:-81887603 | MsaT033282.1:CDS |
GACCAAGATCAAGGGGAGTT+TGG | 0.325620 | 6:-81887631 | MsaT033282.1:CDS |
TTTCATATATTTGGAATGAA+TGG | 0.333235 | 6:-81888410 | MsaT033282.1:CDS |
CTGAAGTCTTCAGCACAAAA+TGG | 0.336425 | 6:+81887799 | None:intergenic |
ATGTTATTCCATATAGCTTT+GGG | 0.337073 | 6:-81886241 | MsaT033282.1:CDS |
CATCTTGATAGAAATTAAAT+AGG | 0.356862 | 6:+81885868 | None:intergenic |
TCAATTATGGTGTGAAGAAC+TGG | 0.359272 | 6:-81886337 | MsaT033282.1:CDS |
AATGTTATTCCATATAGCTT+TGG | 0.374067 | 6:-81886242 | MsaT033282.1:CDS |
GTAAATGTTTCTGAGAATAG+AGG | 0.388331 | 6:-81886209 | MsaT033282.1:CDS |
GGACCATGATGACGAGTCTT+TGG | 0.388380 | 6:-81890035 | MsaT033282.1:CDS |
GAATGCTACTTCCGTCAATA+AGG | 0.388592 | 6:-81886153 | MsaT033282.1:CDS |
CTGAAGACTTCAGAGACATT+TGG | 0.388892 | 6:-81887789 | MsaT033282.1:CDS |
GGAACAGGAACTACGAATAA+AGG | 0.399758 | 6:-81886275 | MsaT033282.1:CDS |
CTCCAAACTCCCCTTGATCT+TGG | 0.403396 | 6:+81887629 | None:intergenic |
CAAAGCATGGTGAGCATCCT+TGG | 0.404636 | 6:+81888481 | None:intergenic |
AAATGATATTTACCTATAAC+AGG | 0.408467 | 6:+81888347 | None:intergenic |
GCTATTAGACAGATTGGAAT+GGG | 0.412602 | 6:-81887550 | MsaT033282.1:CDS |
TTGTATGCTATTAGACAGAT+TGG | 0.429839 | 6:-81887556 | MsaT033282.1:CDS |
TATGGATCTTATTGGAGATC+AGG | 0.439612 | 6:-81885157 | MsaT033282.1:CDS |
CCGTCATATGGAGGAAGAAA+AGG | 0.455186 | 6:-81886470 | MsaT033282.1:CDS |
CAAGGATGCTCACCATGCTT+TGG | 0.455806 | 6:-81888480 | MsaT033282.1:CDS |
TGTTGTGCCAAAGAAAATCT+TGG | 0.455958 | 6:-81887332 | MsaT033282.1:CDS |
TCTACCAGCTATCCGTCATA+TGG | 0.457430 | 6:-81886482 | MsaT033282.1:CDS |
TATAGCAAGTGAAGAAGAAG+AGG | 0.457530 | 6:-81887716 | MsaT033282.1:CDS |
AAGTACATCATCTACTGATC+AGG | 0.467564 | 6:-81885283 | MsaT033282.1:CDS |
AAGTTCCTTGTTAAGAAACT+TGG | 0.471132 | 6:+81886422 | None:intergenic |
AAGTACATCATCTACTGGTC+AGG | 0.478876 | 6:-81885307 | MsaT033282.1:CDS |
AGATCAACAGAAGTGGGAAC+AGG | 0.481464 | 6:-81886290 | MsaT033282.1:CDS |
TACCGACATCATAGTATAGT+TGG | 0.481804 | 6:-81886380 | MsaT033282.1:CDS |
TGACGAGTCTTTGGCATCAC+TGG | 0.484509 | 6:-81890026 | MsaT033282.1:CDS |
GTTGAAATCAGCCTTATTGA+CGG | 0.487701 | 6:+81886142 | None:intergenic |
TGTGATGATGACCAAGATCA+AGG | 0.491694 | 6:-81887640 | MsaT033282.1:CDS |
TTATTAGTCCAAACAAGCCT+TGG | 0.494508 | 6:+81887595 | None:intergenic |
CTGAAAGATGTACAAGAGAA+AGG | 0.494563 | 6:-81886722 | MsaT033282.1:CDS |
AATGACATGGAGATTATGTC+TGG | 0.501152 | 6:+81887853 | None:intergenic |
AAGTACATCAGCTACTGGTC+AGG | 0.502651 | 6:-81885331 | MsaT033282.1:CDS |
TGCACAACATTACCTTCTCA+AGG | 0.519201 | 6:+81885838 | None:intergenic |
TAGAAGCGCCATCATAAAAT+GGG | 0.519791 | 6:+81886501 | None:intergenic |
TCCTCCATATGACGGATAGC+TGG | 0.529760 | 6:+81886478 | None:intergenic |
GTACAAGAGAAAGGAATGGA+AGG | 0.530188 | 6:-81886713 | MsaT033282.1:CDS |
TTTAAGTTCAAAATTTGCAT+CGG | 0.531556 | 6:-81886672 | MsaT033282.1:CDS |
AGATGTACAAGAGAAAGGAA+TGG | 0.533550 | 6:-81886717 | MsaT033282.1:CDS |
TGAATGTTCCAAACCTAACA+AGG | 0.533568 | 6:-81887303 | MsaT033282.1:CDS |
CAGGCAAGTACATCAGCTAC+TGG | 0.536285 | 6:-81885336 | MsaT033282.1:CDS |
CAGGCAAGTACATCATCTAC+TGG | 0.537095 | 6:-81885312 | MsaT033282.1:CDS |
AGACATTTGGAAGTATGCAC+TGG | 0.537346 | 6:-81887776 | MsaT033282.1:CDS |
TGGAGGAAGAAAAGGAATGA+TGG | 0.540522 | 6:-81886462 | MsaT033282.1:CDS |
TGCTATTAGACAGATTGGAA+TGG | 0.548483 | 6:-81887551 | MsaT033282.1:CDS |
ATGCCAAAGACTCGTCATCA+TGG | 0.549394 | 6:+81890032 | None:intergenic |
TAAATGTTTCTGAGAATAGA+GGG | 0.551447 | 6:-81886208 | MsaT033282.1:CDS |
AATCAGAACAATGATGCAAG+TGG | 0.558492 | 6:-81885906 | MsaT033282.1:intron |
GTGATGATGACCAAGATCAA+GGG | 0.559984 | 6:-81887639 | MsaT033282.1:CDS |
GCACAACATTACCTTCTCAA+GGG | 0.560791 | 6:+81885839 | None:intergenic |
ATCACTGGCTAATATACTCA+TGG | 0.566664 | 6:-81890011 | MsaT033282.1:CDS |
CAAGAATAGATCAACAGAAG+TGG | 0.568819 | 6:-81886297 | MsaT033282.1:CDS |
CAAGAGAAAGGAATGGAAGG+AGG | 0.573386 | 6:-81886710 | MsaT033282.1:CDS |
AAGAATAGATCAACAGAAGT+GGG | 0.573718 | 6:-81886296 | MsaT033282.1:CDS |
CACAACCAAAACTTGCATGT+TGG | 0.574671 | 6:+81890057 | None:intergenic |
TGTCACCAAGTTTCTTAACA+AGG | 0.582278 | 6:-81886427 | MsaT033282.1:CDS |
CACAACATTACCTTCTCAAG+GGG | 0.586024 | 6:+81885840 | None:intergenic |
GATTCATCTGCATAAATCAA+AGG | 0.587541 | 6:-81886186 | MsaT033282.1:CDS |
TTGGAGTTGTTAAGAAACCA+AGG | 0.591730 | 6:-81887612 | MsaT033282.1:CDS |
AGATGTGCAACCCCTTGAGA+AGG | 0.604507 | 6:-81885850 | MsaT033282.1:intron |
CTCGAAGAGTGACCAAAGCA+TGG | 0.605583 | 6:+81888468 | None:intergenic |
TGCTCCATGTTCTAATGACA+TGG | 0.612114 | 6:+81887840 | None:intergenic |
GGTGTGAAGAACTGGAGCGT+TGG | 0.621741 | 6:-81886329 | MsaT033282.1:CDS |
TTCCAACTATACTATGATGT+CGG | 0.631257 | 6:+81886378 | None:intergenic |
ATCTCCATGTCATTAGAACA+TGG | 0.631773 | 6:-81887844 | MsaT033282.1:CDS |
ACCAGCTATCCGTCATATGG+AGG | 0.633285 | 6:-81886479 | MsaT033282.1:CDS |
TATTAGACAGATTGGAATGG+GGG | 0.633762 | 6:-81887548 | MsaT033282.1:CDS |
TGATGATGACCAAGATCAAG+GGG | 0.634597 | 6:-81887638 | MsaT033282.1:CDS |
TGGCTAATATACTCATGGCA+TGG | 0.635039 | 6:-81890006 | MsaT033282.1:CDS |
GAATGTTCCAAACCTAACAA+GGG | 0.643998 | 6:-81887302 | MsaT033282.1:CDS |
TAAGGCTGATTTCAACAATG+AGG | 0.645850 | 6:-81886135 | MsaT033282.1:intron |
CAGGAACTACGAATAAAGGA+AGG | 0.649263 | 6:-81886271 | MsaT033282.1:CDS |
CTCATGGCATGGCAATACAA+AGG | 0.657436 | 6:-81889995 | MsaT033282.1:intron |
CTATTAGACAGATTGGAATG+GGG | 0.670869 | 6:-81887549 | MsaT033282.1:CDS |
ATTAGACAGATTGGAATGGG+GGG | 0.685115 | 6:-81887547 | MsaT033282.1:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr6 | gene | 81885122 | 81890095 | 81885122 | ID=MsaG033282 |
Chr6 | mRNA | 81885122 | 81890095 | 81885122 | ID=MsaT033282.1;Parent=MsaG033282 |
Chr6 | exon | 81885122 | 81885187 | 81885122 | ID=MsaT033282.1.exon8;Parent=MsaT033282.1 |
Chr6 | CDS | 81885122 | 81885187 | 81885122 | ID=cds.MsaT033282.1;Parent=MsaT033282.1 |
Chr6 | exon | 81885266 | 81885355 | 81885266 | ID=MsaT033282.1.exon7;Parent=MsaT033282.1 |
Chr6 | CDS | 81885266 | 81885355 | 81885266 | ID=cds.MsaT033282.1;Parent=MsaT033282.1 |
Chr6 | exon | 81885851 | 81885922 | 81885851 | ID=MsaT033282.1.exon6;Parent=MsaT033282.1 |
Chr6 | CDS | 81885851 | 81885922 | 81885851 | ID=cds.MsaT033282.1;Parent=MsaT033282.1 |
Chr6 | exon | 81886136 | 81886759 | 81886136 | ID=MsaT033282.1.exon5;Parent=MsaT033282.1 |
Chr6 | CDS | 81886136 | 81886759 | 81886136 | ID=cds.MsaT033282.1;Parent=MsaT033282.1 |
Chr6 | exon | 81887279 | 81887355 | 81887279 | ID=MsaT033282.1.exon4;Parent=MsaT033282.1 |
Chr6 | CDS | 81887279 | 81887355 | 81887279 | ID=cds.MsaT033282.1;Parent=MsaT033282.1 |
Chr6 | exon | 81887548 | 81887895 | 81887548 | ID=MsaT033282.1.exon3;Parent=MsaT033282.1 |
Chr6 | CDS | 81887548 | 81887895 | 81887548 | ID=cds.MsaT033282.1;Parent=MsaT033282.1 |
Chr6 | exon | 81888360 | 81888512 | 81888360 | ID=MsaT033282.1.exon2;Parent=MsaT033282.1 |
Chr6 | CDS | 81888360 | 81888512 | 81888360 | ID=cds.MsaT033282.1;Parent=MsaT033282.1 |
Chr6 | exon | 81889996 | 81890095 | 81889996 | ID=MsaT033282.1.exon1;Parent=MsaT033282.1 |
Chr6 | CDS | 81889996 | 81890095 | 81889996 | ID=cds.MsaT033282.1;Parent=MsaT033282.1 |
Gene Sequence |
Protein sequence |