AlfalfaGEDB | MsaG033375

M. sativa ssp. caerulea / MsaG033375

KEGG: K09264
GO: GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033375	XP_024641588.1	94.872	195	8	2	1	193	1	195	4.18e-128	368

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033375	sp\|Q6EU39\|MADS6_ORYSJ	60.119	168	65	1	1	168	1	166	2.65e-63	199

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033375	tr\|A0A396HH37\|A0A396HH37_MEDTR	97.126	174	4	1	1	173	1	174	6.08e-118	342

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TFs/TRs:

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Gene ID	Type	Classification
MsaG033375	TF	MADS-MIKC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033375	MtrunA17_Chr6g0474371	97.126	174	4	1	1	173	1	174	1.17e-121	342
MsaG033375	MtrunA17_Chr1g0204111	64.706	187	66	0	1	187	17	203	3.92e-81	241
MsaG033375	MtrunA17_Chr8g0351051	57.542	179	75	1	1	179	1	178	1.59e-61	191
MsaG033375	MtrunA17_Chr6g0455511	51.977	177	72	3	1	171	1	170	1.15e-52	169
MsaG033375	MtrunA17_Chr3g0122251	52.874	174	73	3	1	168	1	171	1.83e-52	168
MsaG033375	MtrunA17_Chr7g0220111	51.744	172	80	2	1	171	1	170	7.72e-52	167
MsaG033375	MtrunA17_Chr4g0061691	55.030	169	74	2	1	168	1	168	3.33e-51	164
MsaG033375	MtrunA17_Chr5g0420091	49.451	182	79	3	1	170	1	181	4.67e-51	163
MsaG033375	MtrunA17_Chr4g0061671	47.399	173	87	3	1	172	1	170	1.84e-45	148
MsaG033375	MtrunA17_Chr8g0366231	51.744	172	75	4	1	168	1	168	9.29e-45	148

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033375	AT2G45650.1	54.971	171	75	2	1	171	1	169	1.41e-54	174
MsaG033375	AT5G15800.1	52.000	175	82	2	1	174	1	174	3.69e-52	168
MsaG033375	AT3G02310.2	51.744	172	81	2	1	171	1	171	4.67e-52	166
MsaG033375	AT1G24260.1	53.179	173	73	3	1	168	1	170	6.58e-52	167
MsaG033375	AT5G15800.2	52.000	175	82	2	1	174	1	174	8.39e-52	167
MsaG033375	AT3G02310.1	51.429	175	83	2	1	174	1	174	1.30e-51	166
MsaG033375	AT1G24260.2	52.632	171	78	2	1	168	1	171	1.12e-50	164
MsaG033375	AT3G61120.1	52.381	168	77	2	1	168	1	165	2.52e-50	163
MsaG033375	AT2G03710.3	48.824	170	83	2	1	168	1	168	2.03e-48	156
MsaG033375	AT2G03710.1	47.253	182	92	2	1	180	1	180	3.41e-48	158

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Find 26 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAATTCATATTCAATTGC+AGG	0.336416	6:-85960811	MsaT033375.1:CDS
ACAAAATCATTGAAAAGTAT+CGG	0.515524	6:-85962858	MsaT033375.1:CDS
ACATAGTACACAAAGCTCAA+AGG	0.618813	6:+85964827	None:intergenic
ACATTCTCAAAGAGAAGAAG+TGG	0.533258	6:-85964864	MsaT033375.1:CDS
ACGTTGTCAGGTGCATCACT+TGG	0.581480	6:-85961063	MsaT033375.1:intron
AGTCTCTCGACCGCAAGCAG+AGG	0.633842	6:-85962616	MsaT033375.1:intron
ATTAGGACATAATGAATCTC+AGG	0.427391	6:-85962800	MsaT033375.1:intron
CAATTGCAGGATATACATTA+AGG	0.326716	6:-85960798	None:intergenic
CCACAAGCTGGCAATTCATT+AGG	0.412131	6:-85962817	MsaT033375.1:CDS
CCAGGACTATTTAAAATTAA+AGG	0.209855	6:-85962648	MsaT033375.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	85960800	85964943	85960800	ID=MsaG033375
Chr6	mRNA	85960800	85964943	85960800	ID=MsaT033375.1;Parent=MsaG033375
Chr6	exon	85960800	85960868	85960800	ID=MsaT033375.1.exon7;Parent=MsaT033375.1
Chr6	CDS	85960800	85960868	85960800	ID=cds.MsaT033375.1;Parent=MsaT033375.1
Chr6	exon	85961034	85961075	85961034	ID=MsaT033375.1.exon6;Parent=MsaT033375.1
Chr6	CDS	85961034	85961075	85961034	ID=cds.MsaT033375.1;Parent=MsaT033375.1
Chr6	exon	85961177	85961218	85961177	ID=MsaT033375.1.exon5;Parent=MsaT033375.1
Chr6	CDS	85961177	85961218	85961177	ID=cds.MsaT033375.1;Parent=MsaT033375.1
Chr6	exon	85961581	85961680	85961581	ID=MsaT033375.1.exon4;Parent=MsaT033375.1
Chr6	CDS	85961581	85961680	85961581	ID=cds.MsaT033375.1;Parent=MsaT033375.1
Chr6	exon	85962617	85962678	85962617	ID=MsaT033375.1.exon3;Parent=MsaT033375.1
Chr6	CDS	85962617	85962678	85962617	ID=cds.MsaT033375.1;Parent=MsaT033375.1
Chr6	exon	85962801	85962885	85962801	ID=MsaT033375.1.exon2;Parent=MsaT033375.1
Chr6	CDS	85962801	85962885	85962801	ID=cds.MsaT033375.1;Parent=MsaT033375.1
Chr6	exon	85964762	85964943	85964762	ID=MsaT033375.1.exon1;Parent=MsaT033375.1
Chr6	CDS	85964762	85964943	85964762	ID=cds.MsaT033375.1;Parent=MsaT033375.1

Gene Sequence

>MsaT033375.1

ATGGGAAGAGGAAGAGTAGTGTTGGAGAGAATAGAGAATAAGATCAATAGGCAAGTAACATTCTCAAAGAGAAGAAGTGGATTGTTGAAGAAAGCCTTTGAGCTTTGTGTACTATGTGATGCTGAAGTAGCACTTATCATTTTTTCAAGCCGTGGCAAGCTTTTTCAATATAGTAGCACTGATATAAACAAAATCATTGAAAAGTATCGGCAATGTCGTTACAACAAGCCACAAGCTGGCAATTCATTAGGACATAATGAATCTCAGAATTTATACCAGGACTATTTAAAATTAAAGGCAAAATATGAGTCTCTCGACCGCAAGCAGAGGCATTTTCATGGGGAAGAACTTGAGCAACTTAGCATGAAAGAATTGCAAAGACTCGAGGAACAACTAGACTTAACCCTCACACAAGCTCGTCAGCAACAAATGAAGAAGCTCATGGCACGAGCTGAGGAATTACGTGAAAAAGTGCATCACTTGGAGGAGGTTAACAAAACATTGGATCCCAAGGCAATAGATGAAACCTCAAACCTCGTTGTTGACAAAACAATTCATATTCAATTGCAGGATATACATTAA

Protein sequence

>MsaT033375.1

MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELCVLCDAEVALIIFSSRGKLFQYSSTDINKIIEKYRQCRYNKPQAGNSLGHNESQNLYQDYLKLKAKYESLDRKQRHFHGEELEQLSMKELQRLEEQLDLTLTQARQQQMKKLMARAEELREKVHHLEEVNKTLDPKAIDETSNLVVDKTIHIQLQDIH*