AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG033375

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG033375 MtrunA17_Chr6g0474371 97.126 174 4 1 1 173 1 174 1.17e-121 342
MsaG033375 MtrunA17_Chr1g0204111 64.706 187 66 0 1 187 17 203 3.92e-81 241
MsaG033375 MtrunA17_Chr8g0351051 57.542 179 75 1 1 179 1 178 1.59e-61 191
MsaG033375 MtrunA17_Chr6g0455511 51.977 177 72 3 1 171 1 170 1.15e-52 169
MsaG033375 MtrunA17_Chr3g0122251 52.874 174 73 3 1 168 1 171 1.83e-52 168
MsaG033375 MtrunA17_Chr7g0220111 51.744 172 80 2 1 171 1 170 7.72e-52 167
MsaG033375 MtrunA17_Chr4g0061691 55.030 169 74 2 1 168 1 168 3.33e-51 164
MsaG033375 MtrunA17_Chr5g0420091 49.451 182 79 3 1 170 1 181 4.67e-51 163
MsaG033375 MtrunA17_Chr4g0061671 47.399 173 87 3 1 172 1 170 1.84e-45 148
MsaG033375 MtrunA17_Chr8g0366231 51.744 172 75 4 1 168 1 168 9.29e-45 148
MsaG033375 MtrunA17_Chr5g0420081 48.634 183 89 4 1 181 1 180 3.30e-43 144
MsaG033375 MtrunA17_Chr7g0220121 47.647 170 83 3 1 168 1 166 9.55e-42 141
MsaG033375 MtrunA17_Chr3g0077501 42.529 174 99 1 1 174 1 173 2.59e-38 131
MsaG033375 MtrunA17_Chr3g0097101 39.791 191 108 2 1 185 16 205 8.72e-38 130
MsaG033375 MtrunA17_Chr8g0351041 43.558 163 88 3 1 161 1 161 4.16e-37 126
MsaG033375 MtrunA17_Chr8g0351031 42.941 170 86 4 1 168 1 161 9.21e-37 127
MsaG033375 MtrunA17_Chr7g0246431 44.379 169 91 2 1 168 1 167 3.77e-36 125
MsaG033375 MtrunA17_Chr4g0057151 44.643 168 92 1 1 168 1 167 4.09e-36 125
MsaG033375 MtrunA17_Chr2g0284911 38.764 178 108 1 1 178 16 192 1.09e-35 125
MsaG033375 MtrunA17_Chr2g0279821 43.949 157 86 1 1 157 1 155 3.40e-35 124
MsaG033375 MtrunA17_Chr5g0411691 43.373 166 89 3 1 164 1 163 3.74e-35 124
MsaG033375 MtrunA17_Chr8g0380021 38.596 171 104 1 1 171 17 186 5.42e-35 123
MsaG033375 MtrunA17_Chr4g0049541 44.286 140 76 1 1 140 1 138 4.44e-32 115
MsaG033375 MtrunA17_Chr3g0125241 41.096 146 78 2 1 144 26 165 3.98e-31 112
MsaG033375 MtrunA17_Chr4g0018421 37.129 202 111 7 1 191 1 197 3.53e-30 109
MsaG033375 MtrunA17_Chr5g0404951 38.150 173 97 3 1 168 1 168 3.58e-29 108
MsaG033375 MtrunA17_Chr7g0246381 81.667 60 11 0 1 60 1 60 4.18e-29 103
MsaG033375 MtrunA17_Chr2g0308251 73.913 69 18 0 1 69 1 69 4.76e-29 103
MsaG033375 MtrunA17_Chr1g0164791 36.628 172 105 2 1 168 1 172 7.17e-29 107
MsaG033375 MtrunA17_Chr3g0142191 37.778 180 100 3 1 174 1 174 8.28e-29 107
MsaG033375 MtrunA17_Chr4g0020221 41.509 159 86 2 1 155 1 156 9.95e-29 107
MsaG033375 MtrunA17_Chr5g0412461 39.306 173 94 2 1 168 1 167 1.29e-28 106
MsaG033375 MtrunA17_Chr5g0412271 39.884 173 93 3 1 168 1 167 1.96e-28 106
MsaG033375 MtrunA17_Chr1g0159661 40.411 146 79 2 1 144 1 140 3.33e-28 104
MsaG033375 MtrunA17_Chr5g0427401 38.824 170 97 2 1 168 1 165 5.84e-28 104
MsaG033375 MtrunA17_Chr8g0377561 81.034 58 11 0 1 58 1 58 2.44e-27 99.4
MsaG033375 MtrunA17_Chr4g0049901 36.416 173 101 3 1 168 27 195 1.19e-25 99.0
MsaG033375 MtrunA17_Chr1g0173161 70.000 60 18 0 1 60 1 60 2.35e-23 89.0
MsaG033375 MtrunA17_Chr5g0427921 63.333 60 22 0 1 60 1 60 4.43e-22 84.7
MsaG033375 MtrunA17_Chr2g0292791 51.471 68 33 0 2 69 9 76 2.23e-20 85.1
MsaG033375 MtrunA17_Chr1g0208561 50.000 70 33 1 2 69 7 76 5.01e-20 84.0
MsaG033375 MtrunA17_Chr3g0089141 50.000 70 33 1 2 69 7 76 6.44e-20 84.0
MsaG033375 MtrunA17_Chr2g0325971 48.571 70 34 1 2 69 7 76 3.11e-19 82.0
MsaG033375 MtrunA17_Chr3g0099421 51.471 68 33 0 2 69 34 101 4.36e-19 82.0
MsaG033375 MtrunA17_Chr3g0099411 48.529 68 35 0 2 69 9 76 4.42e-19 81.3
MsaG033375 MtrunA17_Chr8g0355091 50.000 68 34 0 2 69 9 76 4.44e-19 81.6
MsaG033375 MtrunA17_Chr1g0206701 48.529 68 35 0 2 69 9 76 5.64e-19 81.6
MsaG033375 MtrunA17_Chr1g0206721 48.529 68 35 0 2 69 9 76 6.06e-19 81.3
MsaG033375 MtrunA17_Chr3g0119901 45.122 82 43 1 1 82 8 87 6.65e-19 80.5
MsaG033375 MtrunA17_Chr1g0149391 51.471 68 33 0 2 69 9 76 7.01e-19 81.3
MsaG033375 MtrunA17_Chr3g0134451 39.062 128 68 4 1 127 1 119 8.86e-19 82.0
MsaG033375 MtrunA17_Chr1g0188671 51.471 68 33 0 2 69 47 114 1.24e-18 81.3
MsaG033375 MtrunA17_Chr1g0187361 50.000 68 34 0 2 69 9 76 1.28e-18 80.5
MsaG033375 MtrunA17_Chr5g0419601 50.725 69 34 0 1 69 8 76 2.29e-18 79.7
MsaG033375 MtrunA17_Chr8g0357771 33.333 138 83 3 1 133 1 134 2.52e-18 78.6
MsaG033375 MtrunA17_Chr1g0175611 38.776 98 57 1 1 98 1 95 4.91e-18 77.4
MsaG033375 MtrunA17_Chr1g0208581 47.143 70 35 1 2 69 7 76 5.06e-18 78.6
MsaG033375 MtrunA17_Chr2g0317451 50.000 68 34 0 2 69 9 76 5.14e-18 79.0
MsaG033375 MtrunA17_Chr4g0044071 55.932 59 26 0 1 59 1 59 5.62e-18 75.9
MsaG033375 MtrunA17_Chr2g0317481 50.000 68 34 0 2 69 9 76 5.64e-18 79.0
MsaG033375 MtrunA17_Chr4g0074101 38.679 106 62 1 1 106 1 103 5.96e-18 77.8
MsaG033375 MtrunA17_Chr3g0085241 44.872 78 41 1 1 78 40 115 8.11e-18 78.6
MsaG033375 MtrunA17_Chr8g0377551 40.952 105 62 0 64 168 3 107 1.18e-17 76.6
MsaG033375 MtrunA17_Chr4g0018951 61.111 54 21 0 16 69 26 79 1.81e-17 75.9
MsaG033375 MtrunA17_Chr8g0379021 38.000 100 59 1 2 98 12 111 1.91e-17 76.3
MsaG033375 MtrunA17_Chr1g0206991 45.588 68 37 0 2 69 9 76 2.70e-17 75.9
MsaG033375 MtrunA17_Chr2g0333981 46.377 69 37 0 1 69 11 79 3.07e-17 75.5
MsaG033375 MtrunA17_Chr1g0180591 34.074 135 80 3 1 130 1 131 4.16e-17 75.1
MsaG033375 MtrunA17_Chr1g0175601 35.507 138 80 3 1 133 1 134 4.34e-17 75.1
MsaG033375 MtrunA17_Chr5g0422421 50.000 68 34 0 2 69 9 76 6.07e-17 75.9
MsaG033375 MtrunA17_Chr5g0425191 57.627 59 25 0 1 59 1 59 8.92e-17 72.4
MsaG033375 MtrunA17_Chr1g0166611 65.385 52 17 1 16 66 20 71 1.12e-16 73.2
MsaG033375 MtrunA17_Chr1g0169761 38.384 99 58 1 1 99 1 96 1.46e-16 73.9
MsaG033375 MtrunA17_Chr5g0422941 47.059 68 36 0 2 69 9 76 2.04e-16 74.7
MsaG033375 MtrunA17_Chr2g0300421 47.143 70 35 1 2 69 7 76 2.14e-16 73.2
MsaG033375 MtrunA17_Chr8g0376821 43.662 71 40 0 1 71 1 71 2.52e-16 73.2
MsaG033375 MtrunA17_Chr1g0206691 50.847 59 29 0 11 69 1 59 4.31e-16 73.6
MsaG033375 MtrunA17_Chr3g0089151 44.118 68 38 0 2 69 9 76 9.20e-16 70.5
MsaG033375 MtrunA17_Chr4g0052061 44.928 69 38 0 1 69 1 69 1.26e-15 70.9
MsaG033375 MtrunA17_Chr4g0052081 43.478 69 39 0 1 69 1 69 1.41e-15 71.2
MsaG033375 MtrunA17_Chr2g0300441 44.286 70 37 1 2 69 7 76 3.34e-15 71.2
MsaG033375 MtrunA17_Chr3g0111841 50.000 60 30 0 7 66 1 60 1.02e-14 66.2
MsaG033375 MtrunA17_Chr1g0187351 47.458 59 31 0 11 69 1 59 1.98e-14 65.5
MsaG033375 MtrunA17_Chr4g0060841 45.205 73 38 1 1 71 1 73 3.89e-14 69.7
MsaG033375 MtrunA17_Chr4g0071601 46.377 69 37 0 1 69 11 79 8.47e-14 66.6
MsaG033375 MtrunA17_Chr8g0356071 38.028 71 44 0 1 71 1 71 7.94e-13 63.5
MsaG033375 MtrunA17_Chr2g0308271 38.655 119 69 3 54 171 27 142 2.15e-12 63.2
MsaG033375 MtrunA17_Chr7g0238991 48.077 52 27 0 18 69 37 88 8.05e-12 62.0
MsaG033375 MtrunA17_Chr3g0111931 53.571 56 26 0 14 69 2 57 1.26e-11 58.9
MsaG033375 MtrunA17_Chr5g0417661 47.170 53 28 0 1 53 56 108 2.17e-11 58.9
MsaG033375 MtrunA17_Chr3g0111831 46.032 63 34 0 7 69 9 71 5.93e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG033375 AT2G45650.1 54.971 171 75 2 1 171 1 169 1.41e-54 174
MsaG033375 AT5G15800.1 52.000 175 82 2 1 174 1 174 3.69e-52 168
MsaG033375 AT3G02310.2 51.744 172 81 2 1 171 1 171 4.67e-52 166
MsaG033375 AT1G24260.1 53.179 173 73 3 1 168 1 170 6.58e-52 167
MsaG033375 AT5G15800.2 52.000 175 82 2 1 174 1 174 8.39e-52 167
MsaG033375 AT3G02310.1 51.429 175 83 2 1 174 1 174 1.30e-51 166
MsaG033375 AT1G24260.2 52.632 171 78 2 1 168 1 171 1.12e-50 164
MsaG033375 AT3G61120.1 52.381 168 77 2 1 168 1 165 2.52e-50 163
MsaG033375 AT2G03710.3 48.824 170 83 2 1 168 1 168 2.03e-48 156
MsaG033375 AT2G03710.1 47.253 182 92 2 1 180 1 180 3.41e-48 158
MsaG033375 AT2G03710.2 47.253 182 92 2 1 180 1 180 3.86e-48 158
MsaG033375 AT1G24260.3 49.714 175 81 3 1 170 1 173 4.76e-48 157
MsaG033375 AT5G60910.1 50.588 170 80 3 1 168 1 168 2.66e-47 155
MsaG033375 AT1G26310.1 49.730 185 90 3 1 183 1 184 2.76e-47 155
MsaG033375 AT1G69120.2 51.163 172 78 3 1 169 1 169 2.36e-46 152
MsaG033375 AT1G69120.1 51.462 171 77 3 1 168 1 168 8.18e-46 152
MsaG033375 AT4G22950.2 44.767 172 93 1 1 172 1 170 1.67e-37 128
MsaG033375 AT4G22950.3 44.509 173 94 1 1 173 1 171 4.42e-37 128
MsaG033375 AT4G22950.1 44.509 173 94 1 1 173 1 171 4.42e-37 128
MsaG033375 AT4G11880.2 49.057 159 78 3 1 158 1 157 7.07e-37 126
MsaG033375 AT4G11880.3 49.057 159 78 3 1 158 1 157 7.07e-37 126
MsaG033375 AT2G42830.2 40.606 165 91 2 1 162 16 176 1.09e-36 128
MsaG033375 AT3G58780.1 39.785 186 104 3 1 183 16 196 2.17e-36 127
MsaG033375 AT3G58780.5 39.785 186 104 3 1 183 22 202 2.31e-36 127
MsaG033375 AT4G18960.1 39.548 177 106 1 2 178 18 193 3.61e-36 127
MsaG033375 AT2G42830.1 38.889 180 103 2 1 177 16 191 3.73e-36 127
MsaG033375 AT3G30260.1 49.333 150 66 5 1 144 1 146 3.98e-36 127
MsaG033375 AT4G09960.2 41.818 165 89 3 1 162 1 161 8.51e-36 125
MsaG033375 AT4G09960.1 38.983 177 101 3 1 174 1 173 1.48e-35 124
MsaG033375 AT4G09960.6 38.983 177 101 3 1 174 2 174 1.77e-35 124
MsaG033375 AT4G09960.5 38.983 177 101 3 1 174 11 183 2.17e-35 124
MsaG033375 AT3G57230.2 44.737 152 71 3 1 148 1 143 2.77e-35 121
MsaG033375 AT4G09960.3 38.983 177 101 3 1 174 27 199 4.88e-35 124
MsaG033375 AT3G58780.4 42.384 151 80 2 1 148 16 162 5.81e-35 124
MsaG033375 AT5G13790.2 45.087 173 80 3 1 168 1 163 3.30e-34 122
MsaG033375 AT4G09960.4 41.935 155 83 3 1 152 96 246 3.41e-34 124
MsaG033375 AT5G62165.17 42.138 159 89 2 1 158 1 157 4.20e-34 119
MsaG033375 AT5G62165.12 42.138 159 89 2 1 158 1 157 4.20e-34 119
MsaG033375 AT5G62165.11 42.138 159 89 2 1 158 1 157 4.20e-34 119
MsaG033375 AT3G57230.1 44.025 159 76 3 1 155 1 150 5.14e-34 121
MsaG033375 AT3G57230.4 44.025 159 76 3 1 155 1 150 5.14e-34 121
MsaG033375 AT4G11880.4 50.000 144 69 3 1 143 1 142 6.50e-34 120
MsaG033375 AT4G11880.1 50.000 144 69 3 1 143 1 142 6.50e-34 120
MsaG033375 AT5G62165.3 40.805 174 100 2 1 173 1 172 7.53e-34 120
MsaG033375 AT5G62165.1 40.805 174 100 2 1 173 1 172 7.53e-34 120
MsaG033375 AT5G62165.2 40.805 174 100 2 1 173 1 172 7.53e-34 120
MsaG033375 AT5G62165.10 42.405 158 88 2 1 157 1 156 1.61e-33 118
MsaG033375 AT5G62165.4 42.405 158 88 2 1 157 1 156 1.61e-33 118
MsaG033375 AT2G45660.2 41.509 159 90 2 1 158 1 157 2.07e-33 117
MsaG033375 AT4G37940.4 36.224 196 116 2 1 189 1 194 2.40e-33 119
MsaG033375 AT2G45660.1 38.587 184 110 2 1 183 1 182 4.28e-33 118
MsaG033375 AT4G37940.1 40.127 157 92 1 1 157 1 155 5.29e-33 118
MsaG033375 AT5G62165.6 43.448 145 79 2 1 144 1 143 6.45e-33 115
MsaG033375 AT5G62165.9 43.448 145 79 2 1 144 1 143 6.45e-33 115
MsaG033375 AT5G62165.7 43.448 145 79 2 1 144 1 143 6.45e-33 115
MsaG033375 AT5G62165.8 43.448 145 79 2 1 144 1 143 6.45e-33 115
MsaG033375 AT5G62165.13 43.448 145 79 2 1 144 1 143 6.45e-33 115
MsaG033375 AT3G58780.2 39.344 183 102 3 1 183 16 189 1.25e-32 117
MsaG033375 AT4G37940.3 42.143 140 79 1 1 140 1 138 3.04e-32 114
MsaG033375 AT5G13790.1 44.118 170 83 2 1 168 1 160 3.50e-32 117
MsaG033375 AT2G22630.1 39.286 168 87 3 1 160 1 161 2.10e-31 114
MsaG033375 AT2G22630.2 39.286 168 87 3 1 160 1 161 2.10e-31 114
MsaG033375 AT5G20240.1 38.372 172 91 3 1 163 1 166 2.15e-31 113
MsaG033375 AT3G58780.3 36.019 211 102 4 1 183 16 221 5.94e-31 114
MsaG033375 AT5G20240.2 40.411 146 79 2 1 144 1 140 2.49e-30 108
MsaG033375 AT2G14210.1 44.304 158 80 4 1 156 1 152 6.68e-30 110
MsaG033375 AT2G14210.2 44.304 158 80 4 1 156 1 152 9.94e-30 110
MsaG033375 AT2G22540.3 38.728 173 95 2 1 168 1 167 4.27e-29 108
MsaG033375 AT2G22540.1 38.728 173 95 2 1 168 1 167 4.27e-29 108
MsaG033375 AT5G51860.2 37.423 163 95 1 1 156 1 163 1.23e-28 106
MsaG033375 AT5G51860.1 37.423 163 95 1 1 156 1 163 1.60e-28 106
MsaG033375 AT5G51870.1 39.888 178 89 4 1 165 1 173 7.12e-28 104
MsaG033375 AT5G62165.14 61.972 71 27 0 1 71 1 71 1.65e-27 100
MsaG033375 AT3G57390.3 41.358 162 87 3 1 155 1 161 3.41e-27 103
MsaG033375 AT5G65080.3 37.989 179 101 3 1 178 8 177 4.75e-27 102
MsaG033375 AT3G57390.1 41.358 162 87 3 1 155 1 161 6.42e-27 103
MsaG033375 AT5G51870.2 39.474 152 82 2 1 147 1 147 6.50e-27 100
MsaG033375 AT5G51870.4 39.106 179 91 4 1 166 1 174 9.56e-27 101
MsaG033375 AT5G51870.3 39.106 179 91 4 1 166 11 184 1.24e-26 101
MsaG033375 AT5G51870.5 39.474 152 82 2 1 147 24 170 2.02e-26 100
MsaG033375 AT2G22540.2 38.728 173 90 3 1 168 1 162 2.11e-26 101
MsaG033375 AT4G24540.1 38.012 171 99 2 1 168 1 167 2.19e-26 100
MsaG033375 AT5G10140.4 37.576 165 90 4 1 161 1 156 3.27e-26 99.4
MsaG033375 AT5G23260.2 35.057 174 99 3 1 168 1 166 5.00e-26 100
MsaG033375 AT5G23260.4 35.057 174 99 3 1 168 17 182 7.23e-26 100
MsaG033375 AT1G71692.1 35.000 200 110 4 1 187 1 193 1.06e-25 99.0
MsaG033375 AT5G23260.3 35.948 153 84 3 1 147 1 145 1.80e-24 96.3
MsaG033375 AT5G23260.1 35.057 174 94 4 1 168 17 177 2.50e-24 96.7
MsaG033375 AT3G54340.1 35.294 170 102 2 1 168 1 164 6.75e-24 94.7
MsaG033375 AT5G10140.2 38.065 155 82 4 1 152 1 144 9.76e-24 92.8
MsaG033375 AT5G65050.2 36.686 169 97 4 1 168 1 160 1.28e-23 92.8
MsaG033375 AT5G10140.1 37.255 153 86 3 1 152 1 144 1.47e-23 92.8
MsaG033375 AT5G10140.3 38.065 155 82 4 1 152 1 144 1.55e-23 92.8
MsaG033375 AT5G65050.3 36.686 169 97 4 1 168 1 160 3.25e-23 92.0
MsaG033375 AT5G65050.1 36.478 159 91 4 1 158 1 150 5.47e-22 88.6
MsaG033375 AT1G77080.11 38.462 169 94 3 1 168 1 160 3.82e-21 86.3
MsaG033375 AT5G65050.5 35.503 169 88 4 1 168 1 149 5.92e-21 85.9
MsaG033375 AT1G77080.5 38.462 169 94 3 1 168 1 160 7.40e-21 85.5
MsaG033375 AT5G65070.1 36.207 174 101 3 1 173 1 165 8.12e-21 85.9
MsaG033375 AT1G77080.4 38.462 169 94 3 1 168 1 160 1.07e-20 85.5
MsaG033375 AT5G65080.2 38.514 148 82 2 1 148 8 146 1.36e-20 85.5
MsaG033375 AT5G65070.4 37.748 151 84 3 1 150 1 142 1.40e-20 84.0
MsaG033375 AT5G65060.3 33.163 196 117 7 1 193 1 185 3.55e-20 84.0
MsaG033375 AT1G65360.1 39.796 98 49 2 1 98 6 93 5.94e-20 84.3
MsaG033375 AT5G65060.1 35.503 169 99 4 1 168 1 160 8.53e-20 83.2
MsaG033375 AT1G01530.1 50.746 67 33 0 1 67 6 72 2.41e-19 83.2
MsaG033375 AT5G65070.2 54.286 70 31 1 1 69 1 70 8.92e-19 81.3
MsaG033375 AT5G65070.5 54.286 70 31 1 1 69 1 70 1.36e-18 80.1
MsaG033375 AT5G65070.3 34.314 204 96 8 1 173 1 197 2.62e-18 80.1
MsaG033375 AT5G65060.2 36.047 172 83 6 1 168 1 149 3.29e-18 78.6
MsaG033375 AT1G31140.2 33.803 142 92 1 1 140 1 142 4.85e-18 79.0
MsaG033375 AT2G34440.1 40.741 81 47 1 1 81 1 80 6.72e-18 77.4
MsaG033375 AT1G77080.8 35.263 190 98 5 1 168 1 187 7.97e-18 78.6
MsaG033375 AT4G36590.1 41.111 90 48 1 2 91 7 91 9.54e-18 78.6
MsaG033375 AT1G77980.1 51.429 70 33 1 1 69 1 70 1.09e-17 79.7
MsaG033375 AT1G22130.1 51.429 70 33 1 1 69 1 70 1.82e-17 79.3
MsaG033375 AT5G60440.1 47.059 68 36 0 2 69 7 74 1.88e-17 78.6
MsaG033375 AT1G77080.2 36.905 168 94 3 1 168 1 156 5.56e-17 75.5
MsaG033375 AT1G77080.12 38.608 158 85 4 1 158 1 146 6.23e-17 74.3
MsaG033375 AT1G31140.1 36.301 146 81 4 1 140 1 140 1.69e-16 74.7
MsaG033375 AT2G24840.1 43.478 69 39 0 1 69 62 130 2.89e-16 75.1
MsaG033375 AT1G77950.3 48.571 70 35 1 1 69 1 70 8.76e-16 73.6
MsaG033375 AT1G77950.2 48.571 70 35 1 1 69 1 70 8.76e-16 73.6
MsaG033375 AT1G77950.1 48.571 70 35 1 1 69 1 70 8.76e-16 73.6
MsaG033375 AT1G77950.4 48.571 70 35 1 1 69 1 70 8.76e-16 73.6
MsaG033375 AT3G66656.1 41.429 70 41 0 1 70 1 70 6.08e-15 69.7
MsaG033375 AT4G37435.1 45.238 84 43 2 1 81 1 84 6.31e-15 70.1
MsaG033375 AT1G18750.4 42.466 73 40 1 1 71 1 73 3.07e-13 67.4
MsaG033375 AT1G18750.1 42.466 73 40 1 1 71 1 73 4.03e-13 67.0
MsaG033375 AT1G18750.3 42.466 73 40 1 1 71 1 73 4.60e-13 67.0
MsaG033375 AT1G72350.1 48.529 68 33 1 2 69 43 108 4.61e-13 65.9
MsaG033375 AT3G04100.1 28.148 135 74 3 2 136 14 125 1.64e-12 63.9
MsaG033375 AT1G47760.1 33.065 124 69 3 1 124 1 110 2.95e-12 62.8
MsaG033375 AT2G03060.3 30.233 172 85 7 1 166 1 143 6.22e-12 63.9
MsaG033375 AT2G03060.7 30.233 172 85 7 1 166 1 143 6.22e-12 63.9
MsaG033375 AT2G03060.1 30.233 172 85 7 1 166 1 143 6.22e-12 63.9
MsaG033375 AT2G03060.2 30.233 172 85 7 1 166 1 143 7.25e-12 63.5
MsaG033375 AT1G69540.1 40.278 72 42 1 1 71 1 72 7.36e-11 60.5

Find 26 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGGACTATTTAAAATTAA+AGG 0.209855 6:-85962648 MsaT033375.1:CDS
CAATTGCAGGATATACATTA+AGG 0.326716 6:-85960798 None:intergenic
AACAATTCATATTCAATTGC+AGG 0.336416 6:-85960811 MsaT033375.1:CDS
GAATAGAGAATAAGATCAAT+AGG 0.384169 6:-85964893 MsaT033375.1:CDS
CCACAAGCTGGCAATTCATT+AGG 0.412131 6:-85962817 MsaT033375.1:CDS
ATTAGGACATAATGAATCTC+AGG 0.427391 6:-85962800 MsaT033375.1:intron
GGGAAGAGGAAGAGTAGTGT+TGG 0.444821 6:-85964919 MsaT033375.1:CDS
ACAAAATCATTGAAAAGTAT+CGG 0.515524 6:-85962858 MsaT033375.1:CDS
TTCCTTGCAGAATTTATACC+AGG 0.516754 6:-85962666 MsaT033375.1:intron
ACATTCTCAAAGAGAAGAAG+TGG 0.533258 6:-85964864 MsaT033375.1:CDS
TAACAAAACATTGGATCCCA+AGG 0.538783 6:-85961033 MsaT033375.1:intron
TGATCAGTTACCTCTGCTTG+CGG 0.557111 6:+85962606 None:intergenic
TTTGTCAACAACGAGGTTTG+AGG 0.557701 6:+85960833 None:intergenic
CCTAATGAATTGCCAGCTTG+TGG 0.558570 6:+85962817 None:intergenic
GGAGGAGGTTAACAAAACAT+TGG 0.566471 6:-85961042 MsaT033375.1:CDS
CGTTACAACAAGCCACAAGC+TGG 0.568796 6:-85962829 MsaT033375.1:CDS
TTGTCAGGTGCATCACTTGG+AGG 0.569728 6:-85961060 MsaT033375.1:intron
GAAGCTCATGGCACGAGCTG+AGG 0.572813 6:-85961191 MsaT033375.1:CDS
TCAGGTGCATCACTTGGAGG+AGG 0.575411 6:-85961057 MsaT033375.1:intron
ACGTTGTCAGGTGCATCACT+TGG 0.581480 6:-85961063 MsaT033375.1:intron
GTTGCTGACGAGCTTGTGTG+AGG 0.585890 6:+85961583 None:intergenic
TTGCTGACGAGCTTGTGTGA+GGG 0.602754 6:+85961584 None:intergenic
TTTGCAGATGAAGAAGCTCA+TGG 0.604313 6:-85961203 MsaT033375.1:intron
ACATAGTACACAAAGCTCAA+AGG 0.618813 6:+85964827 None:intergenic
AGTCTCTCGACCGCAAGCAG+AGG 0.633842 6:-85962616 MsaT033375.1:intron
GAAAGAATTGCAAAGACTCG+AGG 0.646936 6:-85961622 MsaT033375.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr6 gene 85960800 85964943 85960800 ID=MsaG033375
Chr6 mRNA 85960800 85964943 85960800 ID=MsaT033375.1;Parent=MsaG033375
Chr6 exon 85960800 85960868 85960800 ID=MsaT033375.1.exon7;Parent=MsaT033375.1
Chr6 CDS 85960800 85960868 85960800 ID=cds.MsaT033375.1;Parent=MsaT033375.1
Chr6 exon 85961034 85961075 85961034 ID=MsaT033375.1.exon6;Parent=MsaT033375.1
Chr6 CDS 85961034 85961075 85961034 ID=cds.MsaT033375.1;Parent=MsaT033375.1
Chr6 exon 85961177 85961218 85961177 ID=MsaT033375.1.exon5;Parent=MsaT033375.1
Chr6 CDS 85961177 85961218 85961177 ID=cds.MsaT033375.1;Parent=MsaT033375.1
Chr6 exon 85961581 85961680 85961581 ID=MsaT033375.1.exon4;Parent=MsaT033375.1
Chr6 CDS 85961581 85961680 85961581 ID=cds.MsaT033375.1;Parent=MsaT033375.1
Chr6 exon 85962617 85962678 85962617 ID=MsaT033375.1.exon3;Parent=MsaT033375.1
Chr6 CDS 85962617 85962678 85962617 ID=cds.MsaT033375.1;Parent=MsaT033375.1
Chr6 exon 85962801 85962885 85962801 ID=MsaT033375.1.exon2;Parent=MsaT033375.1
Chr6 CDS 85962801 85962885 85962801 ID=cds.MsaT033375.1;Parent=MsaT033375.1
Chr6 exon 85964762 85964943 85964762 ID=MsaT033375.1.exon1;Parent=MsaT033375.1
Chr6 CDS 85964762 85964943 85964762 ID=cds.MsaT033375.1;Parent=MsaT033375.1
Gene Sequence

>MsaT033375.1

ATGGGAAGAGGAAGAGTAGTGTTGGAGAGAATAGAGAATAAGATCAATAGGCAAGTAACATTCTCAAAGAGAAGAAGTGGATTGTTGAAGAAAGCCTTTGAGCTTTGTGTACTATGTGATGCTGAAGTAGCACTTATCATTTTTTCAAGCCGTGGCAAGCTTTTTCAATATAGTAGCACTGATATAAACAAAATCATTGAAAAGTATCGGCAATGTCGTTACAACAAGCCACAAGCTGGCAATTCATTAGGACATAATGAATCTCAGAATTTATACCAGGACTATTTAAAATTAAAGGCAAAATATGAGTCTCTCGACCGCAAGCAGAGGCATTTTCATGGGGAAGAACTTGAGCAACTTAGCATGAAAGAATTGCAAAGACTCGAGGAACAACTAGACTTAACCCTCACACAAGCTCGTCAGCAACAAATGAAGAAGCTCATGGCACGAGCTGAGGAATTACGTGAAAAAGTGCATCACTTGGAGGAGGTTAACAAAACATTGGATCCCAAGGCAATAGATGAAACCTCAAACCTCGTTGTTGACAAAACAATTCATATTCAATTGCAGGATATACATTAA
Protein sequence

>MsaT033375.1

MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELCVLCDAEVALIIFSSRGKLFQYSSTDINKIIEKYRQCRYNKPQAGNSLGHNESQNLYQDYLKLKAKYESLDRKQRHFHGEELEQLSMKELQRLEEQLDLTLTQARQQQMKKLMARAEELREKVHHLEEVNKTLDPKAIDETSNLVVDKTIHIQLQDIH*