AlfalfaGEDB | MsaG033633

M. sativa ssp. caerulea / MsaG033633

KEGG: K11423
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009506 GO:0009987 GO:0012505 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0030054 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00856.31

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033633	XP_024641127.1	96.850	254	8	0	25	278	86	339	0.0	519

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033633	sp\|Q945S8\|ASHH3_ARATH	63.475	282	68	6	30	276	82	363	5.90e-117	343

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033633	tr\|G7KMG0\|G7KMG0_MEDTR	96.850	254	8	0	25	278	86	339	0.0	519

TFs/TRs:

Gene ID	Type	Classification
MsaG033633	TR	SET

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001046	MsaG033633	0.824635	1.285492e-53	3.201508e-51
MsaG001403	MsaG033633	0.808354	5.496722e-50	9.021433e-48
MsaG002201	MsaG033633	0.834332	5.794002e-56	1.902477e-53
MsaG002563	MsaG033633	0.801201	1.686428e-48	2.342774e-46
MsaG003188	MsaG033633	0.860251	4.624290e-63	3.630594e-60
MsaG004094	MsaG033633	0.804084	4.315538e-49	6.405422e-47
MsaG004769	MsaG033633	0.836679	1.486887e-56	5.237873e-54
MsaG004806	MsaG033633	0.818665	3.038606e-52	6.452459e-50
MsaG004859	MsaG033633	0.853859	3.483296e-61	2.160472e-58
MsaG005201	MsaG033633	0.800772	2.061674e-48	2.836605e-46
MsaG005533	MsaG033633	0.808158	6.046870e-50	9.878008e-48
MsaG006048	MsaG033633	0.819131	2.384240e-52	5.125227e-50
MsaG006124	MsaG033633	0.831399	3.078202e-55	9.274248e-53
MsaG006307	MsaG033633	0.820384	1.236849e-52	2.748122e-50
MsaG007206	MsaG033633	0.815052	1.948386e-51	3.771262e-49
MsaG007357	MsaG033633	0.808466	5.202156e-50	8.561367e-48
MsaG007364	MsaG033633	0.802996	7.238935e-49	1.047689e-46
MsaG007407	MsaG033633	0.816632	8.688842e-52	1.750729e-49
MsaG007602	MsaG033633	0.834703	4.680816e-56	1.554068e-53
MsaG009073	MsaG033633	0.813879	3.530430e-51	6.635174e-49
MsaG009196	MsaG033633	0.809047	3.914048e-50	6.532265e-48
MsaG009174	MsaG033633	0.878232	6.952822e-69	1.156720e-65
MsaG009230	MsaG033633	0.816050	1.170992e-51	2.324665e-49
MsaG009357	MsaG033633	0.819573	1.892323e-52	4.115006e-50
MsaG010098	MsaG033633	0.829481	9.019219e-55	2.571741e-52
MsaG010466	MsaG033633	0.802535	8.999989e-49	1.288904e-46
MsaG010678	MsaG033633	0.818860	2.745906e-52	5.860573e-50
MsaG011226	MsaG033633	0.822911	3.244132e-53	7.710080e-51
MsaG011443	MsaG033633	0.829947	6.954308e-55	2.009637e-52
MsaG012348	MsaG033633	0.812288	7.858214e-51	1.419248e-48
MsaG012736	MsaG033633	0.832317	1.831377e-55	5.667047e-53
MsaG013413	MsaG033633	0.800926	1.918050e-48	2.648080e-46
MsaG016540	MsaG033633	0.840209	1.844313e-57	7.246940e-55
MsaG016835	MsaG033633	0.838415	5.363040e-57	1.992279e-54
MsaG017355	MsaG033633	0.877982	8.495062e-69	1.396986e-65
MsaG017356	MsaG033633	0.837633	8.498835e-57	3.082113e-54
MsaG019191	MsaG033633	0.834261	6.036143e-56	1.977640e-53
MsaG019467	MsaG033633	0.807198	9.651272e-50	1.540712e-47
MsaG019571	MsaG033633	0.806062	1.672067e-49	2.598653e-47
MsaG019820	MsaG033633	0.810974	1.512407e-50	2.644829e-48
MsaG020220	MsaG033633	0.802452	9.360065e-49	1.337909e-46
MsaG020658	MsaG033633	0.817557	5.395145e-52	1.113329e-49
MsaG020694	MsaG033633	0.822489	4.063157e-53	9.547254e-51
MsaG020907	MsaG033633	0.815587	1.483372e-51	2.910443e-49
MsaG021667	MsaG033633	0.805285	2.429629e-49	3.707851e-47
MsaG022979	MsaG033633	0.801240	1.655754e-48	2.302176e-46
MsaG024130	MsaG033633	0.802537	8.992618e-49	1.287909e-46
MsaG024223	MsaG033633	0.832004	2.187338e-55	6.707798e-53
MsaG025475	MsaG033633	0.808304	5.632658e-50	9.233530e-48
MsaG025742	MsaG033633	0.802091	1.109802e-48	1.573241e-46
MsaG026479	MsaG033633	0.806508	1.347938e-49	2.117208e-47
MsaG026734	MsaG033633	0.803690	5.206244e-49	7.656856e-47
MsaG027172	MsaG033633	0.818936	2.638864e-52	5.643631e-50
MsaG027177	MsaG033633	0.804667	3.266859e-49	4.914561e-47
MsaG027359	MsaG033633	0.827275	3.053879e-54	8.183119e-52
MsaG028043	MsaG033633	0.802212	1.048314e-48	1.490180e-46
MsaG029084	MsaG033633	0.808926	4.153032e-50	6.911012e-48
MsaG029366	MsaG033633	0.803300	6.267605e-49	9.134824e-47
MsaG029680	MsaG033633	0.804368	3.769069e-49	5.631075e-47
MsaG029922	MsaG033633	0.812757	6.210129e-51	1.134810e-48
MsaG030592	MsaG033633	0.842148	5.736831e-58	2.396818e-55
MsaG030774	MsaG033633	0.802223	1.043103e-48	1.483123e-46
MsaG031057	MsaG033633	0.822151	4.862538e-53	1.132241e-50
MsaG031420	MsaG033633	0.804674	3.256033e-49	4.899070e-47
MsaG031645	MsaG033633	0.823341	2.576729e-53	6.196005e-51
MsaG032106	MsaG033633	0.806706	1.224874e-49	1.932877e-47
MsaG032321	MsaG033633	0.813761	3.748683e-51	7.024351e-49
MsaG032815	MsaG033633	0.816183	1.093912e-51	2.179036e-49
MsaG033410	MsaG033633	0.801846	1.245750e-48	1.756142e-46
MsaG033451	MsaG033633	0.850320	3.490393e-60	1.912361e-57
MsaG033632	MsaG033633	0.811463	1.185911e-50	2.098918e-48
MsaG033633	MsaG033776	0.828313	1.724167e-54	4.756508e-52
MsaG033633	MsaG034248	0.831568	2.798983e-55	8.474624e-53
MsaG033633	MsaG034252	0.819307	2.175128e-52	4.697320e-50
MsaG033633	MsaG034328	0.842154	5.714357e-58	2.387980e-55
MsaG033633	MsaG034398	0.817171	6.584724e-52	1.345400e-49
MsaG033633	MsaG034605	0.807041	1.041455e-49	1.656419e-47
MsaG033633	MsaG035699	0.822887	3.285984e-53	7.804544e-51
MsaG033633	MsaG036577	0.813839	3.602532e-51	6.764025e-49
MsaG033633	MsaG039918	0.831747	2.528987e-55	7.697915e-53
MsaG033633	MsaG039930	0.820613	1.096808e-52	2.451616e-50
MsaG033633	MsaG039843	0.814728	2.297477e-51	4.410707e-49
MsaG033633	MsaG040365	0.813987	3.343675e-51	6.301136e-49
MsaG033633	MsaG041769	0.806752	1.198065e-49	1.892625e-47
MsaG033633	MsaG042101	0.828757	1.348214e-54	3.765895e-52
MsaG033633	MsaG042546	0.806011	1.713700e-49	2.660024e-47
MsaG033633	MsaG043756	0.810734	1.703424e-50	2.961471e-48
MsaG033633	MsaG044621	0.820869	9.584477e-53	2.156963e-50
MsaG033633	MsaG045612	0.836869	1.330354e-56	4.713526e-54
MsaG033633	MsaG045695	0.812902	5.774677e-51	1.059049e-48
MsaG033633	MsaG045904	0.812352	7.610440e-51	1.376738e-48
MsaG033633	MsaG045922	0.827870	2.201067e-54	5.997220e-52
MsaG033633	MsaG046240	0.813196	4.983352e-51	9.206530e-49
MsaG033633	MsaG046214	0.825939	6.340995e-54	1.637115e-51
MsaG033633	MsaG046264	0.806977	1.073963e-49	1.705544e-47
MsaG033633	MsaG046403	0.818280	3.712170e-52	7.804147e-50
MsaG033633	MsaG046360	0.805302	2.409549e-49	3.678731e-47
MsaG033633	MsaG046456	0.818558	3.213009e-52	6.803531e-50
MsaG033633	MsaG046562	0.840401	1.644169e-57	6.499910e-55
MsaG033633	MsaG047118	0.804082	4.320069e-49	6.411805e-47
MsaG033633	MsaG008820	0.807378	8.843990e-50	1.417901e-47
MsaG033633	MsaG011837	0.815558	1.506012e-51	2.952610e-49
MsaG033633	MsaG013062	0.808737	4.556254e-50	7.547767e-48
MsaG033633	MsaG014404	0.852961	6.284595e-61	3.776179e-58
MsaG033633	MsaG011535	0.823615	2.225556e-53	5.391475e-51
MsaG033633	MsaG012697	0.812566	6.837509e-51	1.243534e-48
MsaG033633	MsaG024279	0.800862	1.976996e-48	2.725520e-46
MsaG033633	MsaG022314	0.801275	1.628887e-48	2.266633e-46
MsaG033633	MsaG023050	0.803408	5.952151e-49	8.696993e-47
MsaG033633	MsaG028385	0.820144	1.403028e-52	3.097734e-50
MsaG033633	MsaG027227	0.833708	8.290755e-56	2.672277e-53
MsaG033633	MsaG026444	0.828685	1.403371e-54	3.912114e-52
MsaG033633	MsaG026746	0.807910	6.826033e-50	1.108475e-47
MsaG033633	MsaG034616	0.829473	9.057510e-55	2.582048e-52
MsaG033633	MsaG032967	0.806050	1.681280e-49	2.612258e-47
MsaG033633	MsaG031512	0.810521	1.892877e-50	3.273837e-48
MsaG033633	MsaG031473	0.819530	1.935519e-52	4.204264e-50
MsaG033633	MsaG031225	0.812022	8.974504e-51	1.610304e-48
MsaG033633	MsaG033085	0.813470	4.339761e-51	8.072854e-49
MsaG033633	MsaG033440	0.810360	2.049546e-50	3.531049e-48
MsaG033633	MsaG032081	0.806184	1.576278e-49	2.456910e-47
MsaG033633	MsaG031621	0.812771	6.168674e-51	1.127608e-48
MsaG033633	MsaG031718	0.829478	9.035315e-55	2.576099e-52
MsaG033633	MsaG031279	0.810173	2.247981e-50	3.855084e-48
MsaG033633	MsaG037361	0.869442	6.264770e-66	7.092025e-63
MsaG033633	MsaG037217	0.810414	1.995739e-50	3.442873e-48
MsaG033633	MsaG042078	0.811087	1.429649e-50	2.507083e-48
MsaG033633	MsaG046894	0.807385	8.810741e-50	1.412846e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033633	MtrunA17_Chr6g0477001	96.850	254	8	0	25	278	86	339	0.0	519
MsaG033633	MtrunA17_Chr2g0305371	56.707	164	69	1	29	192	313	474	2.66e-61	201
MsaG033633	MtrunA17_Chr3g0125251	44.186	172	93	3	22	190	1294	1465	3.27e-40	148
MsaG033633	MtrunA17_Chr1g0201311	45.882	170	90	2	25	192	57	226	3.81e-39	142
MsaG033633	MtrunA17_Chr1g0201621	45.294	170	91	2	25	192	57	226	1.59e-38	140
MsaG033633	MtrunA17_Chr4g0075321	34.444	180	102	3	26	189	884	1063	3.92e-25	104
MsaG033633	MtrunA17_Chr8g0373821	34.682	173	100	2	26	185	361	533	6.70e-25	103
MsaG033633	MtrunA17_Chr5g0403241	35.000	180	101	3	26	189	1327	1506	1.02e-24	103
MsaG033633	MtrunA17_Chr7g0221611	38.129	139	81	2	51	186	905	1041	1.68e-20	91.3
MsaG033633	MtrunA17_Chr2g0297191	35.294	136	88	0	51	186	1032	1167	2.92e-20	90.5
MsaG033633	MtrunA17_Chr1g0149611	34.483	145	89	2	51	189	363	507	1.16e-19	88.6
MsaG033633	MtrunA17_Chr7g0275611	38.776	147	75	4	55	187	816	961	2.02e-19	88.2
MsaG033633	MtrunA17_Chr4g0003511	30.000	200	106	6	24	189	852	1051	1.03e-18	85.9
MsaG033633	MtrunA17_Chr5g0399801	29.949	197	104	6	23	185	888	1084	1.12e-18	85.9
MsaG033633	MtrunA17_Chr7g0255181	29.189	185	109	4	24	186	517	701	3.00e-18	84.3
MsaG033633	MtrunA17_Chr1g0149581	32.414	145	92	2	51	189	1521	1665	3.33e-18	84.7
MsaG033633	MtrunA17_Chr3g0126701	37.692	130	76	3	62	187	932	1060	4.32e-18	84.3
MsaG033633	MtrunA17_Chr4g0003501	29.703	202	102	6	24	189	757	954	1.03e-17	83.2
MsaG033633	MtrunA17_Chr3g0080761	27.778	198	100	4	24	187	459	647	2.96e-16	78.6
MsaG033633	MtrunA17_Chr1g0147121	36.923	130	77	3	62	187	903	1031	3.23e-16	78.6
MsaG033633	MtrunA17_Chr8g0347071	35.385	130	79	3	62	187	818	946	6.14e-16	77.8
MsaG033633	MtrunA17_Chr8g0354821	27.317	205	111	5	24	190	484	688	1.13e-14	73.9
MsaG033633	MtrunA17_Chr5g0401921	33.077	130	85	2	40	169	703	830	1.81e-14	73.6
MsaG033633	MtrunA17_Chr1g0194631	32.847	137	87	3	40	176	599	730	3.21e-14	72.4
MsaG033633	MtrunA17_Chr7g0235081	30.579	121	84	0	51	171	194	314	2.65e-12	66.2
MsaG033633	MtrunA17_Chr6g0460921	26.882	186	110	7	30	195	243	422	7.18e-12	65.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033633	AT2G44150.1	63.475	282	68	6	30	276	82	363	6.00e-118	343
MsaG033633	AT3G59960.1	58.103	253	74	5	30	250	77	329	1.33e-90	272
MsaG033633	AT3G59960.3	71.823	181	38	1	30	197	77	257	1.69e-87	263
MsaG033633	AT3G59960.2	71.823	181	38	1	30	197	77	257	1.69e-87	263
MsaG033633	AT3G59960.4	71.823	181	38	1	30	197	77	257	1.69e-87	263
MsaG033633	AT4G30860.1	54.167	168	75	1	29	196	306	471	1.88e-60	199
MsaG033633	AT1G77300.2	42.286	175	98	3	22	193	996	1170	2.79e-37	140
MsaG033633	AT1G77300.1	42.286	175	98	3	22	193	996	1170	2.89e-37	140
MsaG033633	AT1G76710.4	44.910	167	90	2	28	192	65	231	8.93e-37	136
MsaG033633	AT1G76710.2	44.910	167	90	2	28	192	65	231	9.14e-37	136
MsaG033633	AT1G76710.1	44.910	167	90	2	28	192	65	231	9.14e-37	136
MsaG033633	AT1G76710.3	44.910	167	90	2	28	192	65	231	1.13e-36	136
MsaG033633	AT2G23740.1	35.593	177	93	4	30	186	1196	1371	3.97e-23	99.4
MsaG033633	AT2G23740.3	35.593	177	93	4	30	186	1203	1378	4.01e-23	99.4
MsaG033633	AT2G23740.6	35.593	177	93	4	30	186	1203	1378	4.01e-23	99.4
MsaG033633	AT2G23740.2	35.593	177	93	4	30	186	1203	1378	4.01e-23	99.4
MsaG033633	AT5G42400.7	39.683	126	76	0	64	189	1262	1387	1.12e-20	92.4
MsaG033633	AT5G42400.2	39.683	126	76	0	64	189	1262	1387	1.12e-20	92.4
MsaG033633	AT5G42400.8	39.683	126	76	0	64	189	1262	1387	1.12e-20	92.4
MsaG033633	AT5G42400.5	39.683	126	76	0	64	189	1262	1387	1.12e-20	92.4
MsaG033633	AT5G42400.4	39.683	126	76	0	64	189	1262	1387	1.12e-20	92.4
MsaG033633	AT5G42400.1	39.683	126	76	0	64	189	1262	1387	1.12e-20	92.4
MsaG033633	AT5G42400.3	39.683	126	76	0	64	189	1262	1387	1.12e-20	92.4
MsaG033633	AT5G42400.6	39.683	126	76	0	64	189	1262	1387	1.12e-20	92.4
MsaG033633	AT2G35160.5	33.871	186	103	5	16	189	580	757	1.16e-20	92.0
MsaG033633	AT2G35160.2	33.871	186	103	5	16	189	616	793	1.29e-20	92.0
MsaG033633	AT2G35160.3	33.871	186	103	5	16	189	616	793	1.29e-20	92.0
MsaG033633	AT2G35160.1	33.871	186	103	5	16	189	616	793	1.29e-20	92.0
MsaG033633	AT2G35160.4	33.871	186	103	5	16	189	616	793	1.29e-20	92.0
MsaG033633	AT1G05830.2	36.691	139	83	2	51	186	919	1055	1.54e-18	85.9
MsaG033633	AT1G05830.4	36.691	139	83	2	51	186	919	1055	1.54e-18	85.9
MsaG033633	AT1G05830.1	36.691	139	83	2	51	186	919	1055	1.54e-18	85.9
MsaG033633	AT1G05830.3	36.691	139	83	2	51	186	919	1055	1.54e-18	85.9
MsaG033633	AT2G22740.2	31.944	216	105	8	13	189	577	789	2.04e-18	85.5
MsaG033633	AT2G22740.1	31.944	216	105	8	13	189	577	789	2.04e-18	85.5
MsaG033633	AT2G31650.1	36.691	139	83	2	51	186	898	1034	2.92e-18	85.1
MsaG033633	AT4G27910.1	38.462	130	75	3	62	187	896	1024	1.52e-17	82.8
MsaG033633	AT5G53430.1	36.923	130	77	3	62	187	912	1040	7.40e-16	77.8
MsaG033633	AT3G61740.1	38.168	131	75	4	62	187	886	1015	7.43e-16	77.8
MsaG033633	AT1G02580.1	34.177	158	94	3	26	175	511	666	8.35e-16	77.8
MsaG033633	AT3G61740.2	38.168	131	75	4	62	187	850	979	1.04e-15	77.4
MsaG033633	AT1G17770.1	28.774	212	112	6	12	186	480	689	1.38e-15	77.0
MsaG033633	AT3G03750.2	29.189	185	106	6	30	193	170	350	1.83e-14	72.8
MsaG033633	AT4G02020.1	32.847	137	87	3	40	176	696	827	2.29e-14	73.6
MsaG033633	AT5G04940.2	27.586	203	110	5	24	190	469	670	2.81e-14	73.2
MsaG033633	AT5G04940.1	27.586	203	110	5	24	190	469	670	2.81e-14	73.2
MsaG033633	AT5G13960.2	28.141	199	104	5	30	189	291	489	6.45e-14	72.0
MsaG033633	AT5G13960.1	28.141	199	104	5	30	189	425	623	1.21e-13	71.2
MsaG033633	AT2G23380.1	36.111	108	67	2	62	169	763	868	7.59e-12	65.9
MsaG033633	AT2G23380.2	36.111	108	67	2	62	169	536	641	8.60e-12	65.9
MsaG033633	AT2G24740.1	27.551	196	97	6	35	190	565	755	5.41e-11	63.2
MsaG033633	AT2G23740.4	35.398	113	60	2	30	130	1203	1314	7.34e-11	63.2
MsaG033633	AT2G23740.5	35.398	113	60	2	30	130	1203	1314	7.34e-11	63.2

Find 53 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACCTGATATGCCACTAATTT+AGG	0.249497	6:-95850699	None:intergenic
GCAGATTTGGGATTATTAAA+TGG	0.252262	6:+95855154	MsaT033633.1:intron
CATAGCAGGTTTGTTCAATT+TGG	0.254145	6:+95850609	MsaT033633.1:intron
CATTTCTGCATCTCAGTATT+CGG	0.269242	6:-95849975	None:intergenic
GCCTAAATTAGTGGCATATC+AGG	0.297012	6:+95850698	MsaT033633.1:CDS
CTTCTGTCTAGCTGTTCTTC+AGG	0.341155	6:+95849286	MsaT033633.1:CDS
CAGTATTCGGGCAGCAACTA+TGG	0.356191	6:-95849962	None:intergenic
GTGATAGATGCGACAAATAA+AGG	0.361111	6:+95849918	MsaT033633.1:CDS
AAACAAGCTTACCAGTTTGC+AGG	0.361797	6:-95854806	None:intergenic
TCCATCTTTAGGATAATAGA+TGG	0.401604	6:+95850132	MsaT033633.1:intron
TGTTCAATGTAGGCGTAAGC+TGG	0.427738	6:+95850659	MsaT033633.1:CDS
ATGTGAAATCAATCGAGATA+TGG	0.429587	6:+95849896	MsaT033633.1:CDS
AAACATGCGAACAGAGGCTT+TGG	0.435383	6:+95849838	MsaT033633.1:CDS
CAGAATGGAGGCCTGCAAAC+TGG	0.440962	6:+95854795	MsaT033633.1:CDS
ATGACATGTCAAAAGAAGAA+TGG	0.445126	6:+95855534	MsaT033633.1:CDS
CGAATACTGAGATGCAGAAA+TGG	0.448001	6:+95849976	MsaT033633.1:CDS
ACCTACCAAGCCTAAATTAG+TGG	0.455934	6:+95850689	MsaT033633.1:CDS
GTTCTTCAGGCTGCAAATGC+GGG	0.457663	6:+95849299	MsaT033633.1:CDS
TGACATGTCAAAAGAAGAAT+GGG	0.471345	6:+95855535	MsaT033633.1:CDS
TAGACTGAGAAATGTGGATC+TGG	0.471672	6:+95849643	MsaT033633.1:intron
ATTTCTGCATCTCAGTATTC+GGG	0.478549	6:-95849974	None:intergenic
TCTGGACAGGTTTATCAGAA+TGG	0.486271	6:+95854780	MsaT033633.1:intron
TGCAAGTCGTGATATAAAGA+AGG	0.505376	6:+95850176	MsaT033633.1:CDS
ATATGCCACTAATTTAGGCT+TGG	0.510433	6:-95850694	None:intergenic
AATTGAGTAAGCAATTTGAA+TGG	0.521092	6:-95854963	None:intergenic
TTTCAGATCATGTTTGAGGA+TGG	0.537141	6:+95855497	MsaT033633.1:intron
GTAATTGAATATGTCGGAGA+AGG	0.545438	6:+95849703	MsaT033633.1:CDS
TGTTCTTCAGGCTGCAAATG+CGG	0.552563	6:+95849298	MsaT033633.1:CDS
GCAGATGAAGATATAAAGCA+TGG	0.559769	6:+95849673	MsaT033633.1:CDS
ATAGATGGTGAAACTAGAAT+CGG	0.561402	6:+95850147	MsaT033633.1:CDS
GCCACTAATTTAGGCTTGGT+AGG	0.568833	6:-95850690	None:intergenic
GTTATTATGATAAAACAACT+TGG	0.570866	6:+95854997	MsaT033633.1:CDS
ACTGTGGTGCTGTTCAATGT+AGG	0.576878	6:+95850649	MsaT033633.1:CDS
TCTGATTCTACTGCTGTATG+TGG	0.586087	6:+95849100	MsaT033633.1:CDS
GAGTTTGTAATTGAATATGT+CGG	0.587237	6:+95849697	MsaT033633.1:CDS
CAGATGAAGATATAAAGCAT+GGG	0.595965	6:+95849674	MsaT033633.1:CDS
GTTCAATGTAGGCGTAAGCT+GGG	0.608277	6:+95850660	MsaT033633.1:CDS
CTTTGGAATATGAAAGATCG+TGG	0.610205	6:+95849855	MsaT033633.1:CDS
GCAAGTCGTGATATAAAGAA+GGG	0.610253	6:+95850177	MsaT033633.1:CDS
TTTGGAATATGAAAGATCGT+GGG	0.627929	6:+95849856	MsaT033633.1:CDS
ATGATAAAACATGCGAACAG+AGG	0.637191	6:+95849832	MsaT033633.1:CDS
TAAAACAACTTGGAAATGTG+AGG	0.644254	6:+95855007	MsaT033633.1:CDS
GTGGTAGAGATTGCCACTGT+GGG	0.651295	6:+95849119	MsaT033633.1:CDS
GGACAGGTTTATCAGAATGG+AGG	0.664470	6:+95854783	MsaT033633.1:intron
TGAATATTCTCGAAAACACA+AGG	0.669513	6:+95855182	MsaT033633.1:CDS
GAAATGTGGATCTGGAATTG+TGG	0.670067	6:+95849651	MsaT033633.1:CDS
AGATGAAGATATAAAGCATG+GGG	0.676792	6:+95849675	MsaT033633.1:CDS
TGTGGTAGAGATTGCCACTG+TGG	0.693149	6:+95849118	MsaT033633.1:CDS
TTGGAATATGAAAGATCGTG+GGG	0.693630	6:+95849857	MsaT033633.1:CDS
GCAGATCAAGATTGCCACTG+TGG	0.694777	6:+95850633	MsaT033633.1:CDS
TACATTGAACAGCACCACAG+TGG	0.726690	6:-95850647	None:intergenic
ACTTAGTTACTTACCCACAG+TGG	0.732787	6:-95849132	None:intergenic
TGCTTGTAGACTGAGAAATG+TGG	0.734376	6:+95849637	MsaT033633.1:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	95849074	95855574	95849074	ID=MsaG033633
Chr6	mRNA	95849074	95855574	95849074	ID=MsaT033633.1;Parent=MsaG033633
Chr6	exon	95849074	95849144	95849074	ID=MsaT033633.1.exon1;Parent=MsaT033633.1
Chr6	CDS	95849074	95849144	95849074	ID=cds.MsaT033633.1;Parent=MsaT033633.1
Chr6	exon	95849282	95849381	95849282	ID=MsaT033633.1.exon2;Parent=MsaT033633.1
Chr6	CDS	95849282	95849381	95849282	ID=cds.MsaT033633.1;Parent=MsaT033633.1
Chr6	exon	95849646	95849724	95849646	ID=MsaT033633.1.exon3;Parent=MsaT033633.1
Chr6	CDS	95849646	95849724	95849646	ID=cds.MsaT033633.1;Parent=MsaT033633.1
Chr6	exon	95849826	95849997	95849826	ID=MsaT033633.1.exon4;Parent=MsaT033633.1
Chr6	CDS	95849826	95849997	95849826	ID=cds.MsaT033633.1;Parent=MsaT033633.1
Chr6	exon	95850143	95850223	95850143	ID=MsaT033633.1.exon5;Parent=MsaT033633.1
Chr6	CDS	95850143	95850223	95850143	ID=cds.MsaT033633.1;Parent=MsaT033633.1
Chr6	exon	95850617	95850719	95850617	ID=MsaT033633.1.exon6;Parent=MsaT033633.1
Chr6	CDS	95850617	95850719	95850617	ID=cds.MsaT033633.1;Parent=MsaT033633.1
Chr6	exon	95854789	95854816	95854789	ID=MsaT033633.1.exon7;Parent=MsaT033633.1
Chr6	CDS	95854789	95854816	95854789	ID=cds.MsaT033633.1;Parent=MsaT033633.1
Chr6	exon	95854944	95855028	95854944	ID=MsaT033633.1.exon8;Parent=MsaT033633.1
Chr6	CDS	95854944	95855028	95854944	ID=cds.MsaT033633.1;Parent=MsaT033633.1
Chr6	exon	95855158	95855203	95855158	ID=MsaT033633.1.exon9;Parent=MsaT033633.1
Chr6	CDS	95855158	95855203	95855158	ID=cds.MsaT033633.1;Parent=MsaT033633.1
Chr6	exon	95855503	95855574	95855503	ID=MsaT033633.1.exon10;Parent=MsaT033633.1
Chr6	CDS	95855503	95855574	95855503	ID=cds.MsaT033633.1;Parent=MsaT033633.1

Gene Sequence

>MsaT033633.1

ATGGTATATTCTGTTCTTGCGCATCTTCTGATTCTACTGCTGTATGTGGTAGAGATTGCCACTGTGGGTAAGATGCTTCTGTCTAGCTGTTCTTCAGGCTGCAAATGCGGGATCTCATGTCTCAACAAAGCTTTTCAGCACCGTCCTATTAAAAAGATGAAATTAATCAAGACTGAGAAATGTGGATCTGGAATTGTGGCAGATGAAGATATAAAGCATGGGGAGTTTGTAATTGAATATGTCGGAGAAGTTATCGATGATAAAACATGCGAACAGAGGCTTTGGAATATGAAAGATCGTGGGGAAACAAACTTCTACTTATGTGAAATCAATCGAGATATGGTGATAGATGCGACAAATAAAGGAAACAAGTCAAGATACATCAACCATAGTTGCTGCCCGAATACTGAGATGCAGAAATGGATAATAGATGGTGAAACTAGAATCGGCATATTTGCAAGTCGTGATATAAAGAAGGGCGAACATCTGACTTACGACTACCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGTGCTGTTCAATGTAGGCGTAAGCTGGGTGTGCGACCTACCAAGCCTAAATTAGTGGCATATCAGGTTTATCAGAATGGAGGCCTGCAAACTGGTGGTTCTCGTGTTGTTGACCATTCAAATTGCTTACTCAATTGCATCGATGAAGTTATTATGATAAAACAACTTGGAAATGTGAGATTTGGGATTATTAAATGGTTCGATGAATATTCTCGAAAACACAAGATCATGTTTGAGGATGGTTGTGTTGAAATCTATGACATGTCAAAAGAAGAATGGGAATTAGTGAGATTGTGA

Protein sequence

>MsaT033633.1

MVYSVLAHLLILLLYVVEIATVGKMLLSSCSSGCKCGISCLNKAFQHRPIKKMKLIKTEKCGSGIVADEDIKHGEFVIEYVGEVIDDKTCEQRLWNMKDRGETNFYLCEINRDMVIDATNKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFASRDIKKGEHLTYDYQFVQFGADQDCHCGAVQCRRKLGVRPTKPKLVAYQVYQNGGLQTGGSRVVDHSNCLLNCIDEVIMIKQLGNVRFGIIKWFDEYSRKHKIMFEDGCVEIYDMSKEEWELVRL*