AlfalfaGEDB | MsaG033793

M. sativa ssp. caerulea / MsaG033793

KEGG: K13464
GO: GO:0001101 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141
PFAM: PF06200.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033793	XP_003619851.3	96.970	429	13	0	1	429	1	429	0.0	846

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033793	sp\|Q9LVI4\|TIF6B_ARATH	39.706	408	153	19	1	391	1	332	8.57e-54	186

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033793	tr\|A0A396HFY8\|A0A396HFY8_MEDTR	96.970	429	13	0	1	429	1	429	0.0	846

TFs/TRs:

Gene ID	Type	Classification
MsaG033793	TF	Tify

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000210	MsaG033793	0.832314	1.835039e-55	5.677831e-53
MsaG000225	MsaG033793	0.804697	3.220196e-49	4.847702e-47
MsaG004353	MsaG033793	0.808030	6.435801e-50	1.048136e-47
MsaG006267	MsaG033793	0.807943	6.715427e-50	1.091375e-47
MsaG007238	MsaG033793	0.819529	1.937133e-52	4.207557e-50
MsaG011082	MsaG033793	0.810142	2.283231e-50	3.912525e-48
MsaG011659	MsaG033793	0.812785	6.125697e-51	1.120140e-48
MsaG012500	MsaG033793	0.879547	2.401762e-69	4.245961e-66
MsaG014130	MsaG033793	0.802322	9.951963e-49	1.418309e-46
MsaG016424	MsaG033793	0.914204	6.236652e-84	7.799494e-80
MsaG017095	MsaG033793	0.808406	5.358298e-50	8.805158e-48
MsaG017966	MsaG033793	0.801349	1.573425e-48	2.193163e-46
MsaG021523	MsaG033793	0.830126	6.290595e-55	1.827143e-52
MsaG023778	MsaG033793	0.804456	3.614175e-49	5.410471e-47
MsaG023930	MsaG033793	0.816627	8.714149e-52	1.755566e-49
MsaG025467	MsaG033793	0.812796	6.090548e-51	1.114026e-48
MsaG027491	MsaG033793	0.801357	1.567776e-48	2.185659e-46
MsaG029951	MsaG033793	0.844177	1.661018e-58	7.408189e-56
MsaG033793	MsaG040670	0.810296	2.115750e-50	3.639246e-48
MsaG033793	MsaG044336	0.818582	3.172762e-52	6.722703e-50
MsaG033793	MsaG044888	0.812992	5.520897e-51	1.014780e-48
MsaG033793	MsaG046029	0.832290	1.859296e-55	5.749012e-53
MsaG033793	MsaG047053	0.800701	2.131707e-48	2.928257e-46
MsaG033793	MsaG031338	0.816751	8.172685e-52	1.651841e-49
MsaG033793	MsaG033321	0.829410	9.383127e-55	2.669931e-52

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033793	MtrunA17_Chr6g0478581	96.970	429	13	0	1	429	1	429	0.0	846
MsaG033793	MtrunA17_Chr1g0161031	30.714	420	181	15	1	394	1	336	4.65e-32	125

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033793	AT3G17860.1	39.706	408	153	19	1	391	1	332	8.71e-55	186
MsaG033793	AT3G17860.2	38.978	372	141	17	34	391	20	319	1.87e-44	158
MsaG033793	AT3G17860.3	38.770	374	137	18	35	391	1	299	6.11e-44	156
MsaG033793	AT3G17860.4	38.770	374	137	18	35	391	1	299	6.11e-44	156
MsaG033793	AT1G48500.1	33.732	418	132	18	1	396	1	295	6.55e-38	140
MsaG033793	AT1G48500.2	33.333	399	122	17	1	378	1	276	3.50e-33	126
MsaG033793	AT1G48500.3	32.143	364	108	14	35	378	2	246	2.22e-27	109
MsaG033793	AT1G70700.2	41.593	113	58	4	125	237	58	162	1.21e-12	67.8
MsaG033793	AT1G70700.1	41.593	113	58	4	125	237	58	162	1.96e-12	67.8
MsaG033793	AT1G70700.3	41.593	113	58	4	125	237	58	162	2.72e-12	67.4

Find 98 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCCATACATGTTCTTCTTAA+AGG	0.090775	6:+99357491	None:intergenic
CTTGTTTCCTACTTGCTTTA+TGG	0.147271	6:+99359391	None:intergenic
TGTTCTTCTTAAAGGCAAAT+TGG	0.268291	6:+99357499	None:intergenic
GTCTAATCATAAATCATTCT+TGG	0.289760	6:-99361261	MsaT033793.1:CDS
TTTGATGCAGTTAGGAGTTC+AGG	0.316880	6:-99361434	MsaT033793.1:intron
GTTACAAACTCACAAACTTT+TGG	0.317063	6:-99359242	MsaT033793.1:CDS
AAATGCTTCTACTAACCATT+TGG	0.323976	6:-99358298	MsaT033793.1:CDS
AATCTCTATTCCTTCCAAAA+AGG	0.344054	6:-99358601	MsaT033793.1:CDS
AACTGTACCACCATAAAATA+TGG	0.350649	6:+99358864	None:intergenic
AAAACGATACCTTGGTCCTT+TGG	0.357357	6:+99365313	None:intergenic
GTTGGAAGCATCTTCTTTCA+TGG	0.359919	6:+99365339	None:intergenic
AGTTTCTCCATTGATTTCTC+TGG	0.361158	6:-99357542	MsaT033793.1:CDS
ACCTTGGTCCTTTGGTTTGT+TGG	0.375341	6:+99365321	None:intergenic
CCTGGTTGAATCACATTTGT+AGG	0.375793	6:+99358240	None:intergenic
CGGTGTAGTACCATTGGATT+TGG	0.378173	6:+99358897	None:intergenic
TTTGAGGGAAGAACAGATAA+AGG	0.390189	6:+99359200	None:intergenic
GTCACAATAATAAGATCTTT+AGG	0.396082	6:-99358327	MsaT033793.1:CDS
TCTGATCCAGTGCTGCATTC+AGG	0.408286	6:+99357572	None:intergenic
CAATCTAATCATGTTACTAC+TGG	0.412033	6:-99359284	MsaT033793.1:CDS
TGAGAGGACTTTGCAATTGA+AGG	0.412113	6:+99358447	None:intergenic
TAAGTCAGTAGAGCCAACTA+TGG	0.416073	6:+99359172	None:intergenic
GTTGCTACTTGAACCTCCCT+TGG	0.419319	6:+99358356	None:intergenic
TAGTTGGCTCTACTGACTTA+AGG	0.429024	6:-99359169	MsaT033793.1:intron
CAGTAGTAACATGATTAGAT+TGG	0.431253	6:+99359285	None:intergenic
TTATCTGTTCTTCCCTCAAA+AGG	0.432397	6:-99359197	MsaT033793.1:CDS
CCTATTGTTGCTACTTCTGT+AGG	0.433479	6:-99358270	MsaT033793.1:CDS
CTGATTGTGCATCAGAACTT+TGG	0.440135	6:+99359345	None:intergenic
CCTACAGAAGTAGCAACAAT+AGG	0.446555	6:+99358270	None:intergenic
GAAGTCATTGGGAGAGAACT+TGG	0.446941	6:+99358396	None:intergenic
GAACTTGCATGAGAAGTCAT+TGG	0.447319	6:+99358384	None:intergenic
TTGCTACTTGATCCTCCCCT+TGG	0.449675	6:+99358501	None:intergenic
GCCTTTAAGAAGAACATGTA+TGG	0.452229	6:-99357492	MsaT033793.1:CDS
GCTTGGCAATGGTGAGGGAT+AGG	0.455476	6:+99358557	None:intergenic
TTGCTACTTGAACCTCCCTT+GGG	0.466052	6:+99358357	None:intergenic
GAGGTCATTGGAAGAGGGCT+TGG	0.466655	6:+99358540	None:intergenic
GTACTTGCATGAGAGGTCAT+TGG	0.470357	6:+99358528	None:intergenic
TCTAATCATAAATCATTCTT+GGG	0.475638	6:-99361260	MsaT033793.1:CDS
GTTTCCAGTTGGACTGCCTC+AGG	0.477866	6:-99358001	MsaT033793.1:intron
AGAATAACACTCATGAAGAT+AGG	0.479954	6:-99361355	MsaT033793.1:CDS
CCCTCAAAAGGTCCCATAGT+TGG	0.482615	6:-99359185	MsaT033793.1:CDS
AACTTGCATGAGAAGTCATT+GGG	0.486290	6:+99358385	None:intergenic
ATATATCCTGATGAAGCTAC+TGG	0.487462	6:+99361311	None:intergenic
TAAAATATGGTCAACTGAGC+CGG	0.491802	6:+99358877	None:intergenic
CTTGGCAATGGTGAGGGATA+GGG	0.492080	6:+99358558	None:intergenic
GCATGAGAGGTCATTGGAAG+AGG	0.495990	6:+99358534	None:intergenic
ATGGATCCAGTAGCTTCATC+AGG	0.498303	6:-99361317	MsaT033793.1:CDS
ATCATGTTACTAGCTGGAAA+TGG	0.499618	6:-99358642	MsaT033793.1:CDS
CTGAGCCGGTGTAGTACCAT+TGG	0.502183	6:+99358891	None:intergenic
GTCACAATAATAAGATCCTT+AGG	0.503685	6:-99358471	MsaT033793.1:CDS
AACTTGGCAAAGGTGAGAGA+TGG	0.504464	6:+99358412	None:intergenic
TTCTTGAATGACATGAATTG+AGG	0.505348	6:+99361374	None:intergenic
ATCATTCTTGGGTGTGACAC+AGG	0.505809	6:-99361249	MsaT033793.1:intron
CAACAATAGGAGATTCCAAA+TGG	0.511822	6:+99358283	None:intergenic
CTTTGCAATTGAAGGTCCTA+AGG	0.512362	6:+99358455	None:intergenic
TAGGTCAAGAAACAGTGTTA+TGG	0.516069	6:-99361336	MsaT033793.1:CDS
AACAGATAAAGGTGTGGCAG+AGG	0.516274	6:+99359211	None:intergenic
AAGGCAATCATGTTACTAGC+TGG	0.519440	6:-99358648	MsaT033793.1:CDS
TCATGCAAGTTCTTATCCCA+AGG	0.526316	6:-99358373	MsaT033793.1:CDS
CTTCTTAAAGGCAAATTGGT+GGG	0.529876	6:+99357503	None:intergenic
TCTTCTTTCATGGTAGTCCA+TGG	0.530904	6:+99365349	None:intergenic
AAATCACCTGAATGCAGCAC+TGG	0.539481	6:-99357578	MsaT033793.1:CDS
ACTTGGCAAAGGTGAGAGAT+GGG	0.542203	6:+99358413	None:intergenic
ACTTGAACCAGAGAAATCAA+TGG	0.546674	6:+99357535	None:intergenic
AGAGGGCTTGGCAATGGTGA+GGG	0.558559	6:+99358552	None:intergenic
TGGTTGAGTACTTGCATGAG+AGG	0.558968	6:+99358521	None:intergenic
TCTTCTTAAAGGCAAATTGG+TGG	0.560082	6:+99357502	None:intergenic
TGGTTAGTAGAAGCATTTGA+AGG	0.561148	6:+99358303	None:intergenic
CATATGGAAAGAGAATTCCT+TGG	0.576225	6:-99365391	MsaT033793.1:CDS
CATGAGAGGTCATTGGAAGA+GGG	0.576369	6:+99358535	None:intergenic
TGAATGACATGAATTGAGGA+AGG	0.578633	6:+99361378	None:intergenic
ATTGGAAGAGGGCTTGGCAA+TGG	0.579330	6:+99358546	None:intergenic
TTGTGCATCAGAACTTTGGA+TGG	0.580883	6:+99359349	None:intergenic
AAGAGGGCTTGGCAATGGTG+AGG	0.587772	6:+99358551	None:intergenic
CTTAAAGGCAAATTGGTGGG+TGG	0.595542	6:+99357506	None:intergenic
CGCGAAAAGCATCGTTAACG+CGG	0.596341	6:-99357978	MsaT033793.1:CDS
CCTACAAATGTGATTCAACC+AGG	0.596560	6:-99358240	MsaT033793.1:intron
TCATGCAAGTACTCAACCAA+GGG	0.597542	6:-99358517	MsaT033793.1:CDS
AAGTCAGTAGAGCCAACTAT+GGG	0.597778	6:+99359173	None:intergenic
CATGCAAGTTCTTATCCCAA+GGG	0.608931	6:-99358372	MsaT033793.1:CDS
TGATGACATCTCTCCTGAGA+AGG	0.609439	6:-99358833	MsaT033793.1:intron
CTCATGCAAGTACTCAACCA+AGG	0.611643	6:-99358518	MsaT033793.1:CDS
AGGAATTGTTCCAAATCCAA+TGG	0.614409	6:-99358907	MsaT033793.1:CDS
ATGGGATAGGTCATTGTGAG+AGG	0.619583	6:+99358431	None:intergenic
GCAAAGGTGAGAGATGGGAT+AGG	0.630123	6:+99358418	None:intergenic
AATTTGGCCATAAAGCAAGT+AGG	0.634556	6:-99359398	MsaT033793.1:CDS
GCAATGGTGAGGGATAGGGT+TGG	0.638300	6:+99358562	None:intergenic
AAGCAAGTAGGAAACAAGCA+TGG	0.639462	6:-99359386	MsaT033793.1:CDS
GCAAGTTCTTATCCCAAGGG+AGG	0.641995	6:-99358369	MsaT033793.1:CDS
TGTGCATCAGAACTTTGGAT+GGG	0.644773	6:+99359350	None:intergenic
ATTGGGAGAGAACTTGGCAA+AGG	0.651165	6:+99358402	None:intergenic
CAAATCCAATGGTACTACAC+CGG	0.651773	6:-99358896	MsaT033793.1:CDS
AGATGCTTCCAACAAACCAA+AGG	0.662188	6:-99365329	MsaT033793.1:CDS
TCCAACAAACCAAAGGACCA+AGG	0.670257	6:-99365322	MsaT033793.1:intron
GCAAGTACTCAACCAAGGGG+AGG	0.678862	6:-99358513	MsaT033793.1:CDS
TTAGGAGTTCAGGAATGCAG+TGG	0.686957	6:-99361424	MsaT033793.1:CDS
TGTTACTACTGGAATCAACA+TGG	0.687462	6:-99359273	MsaT033793.1:CDS
GGGAAGAACAGATAAAGGTG+TGG	0.711636	6:+99359205	None:intergenic
CATGCAAGTACTCAACCAAG+GGG	0.756359	6:-99358516	MsaT033793.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	99357478	99365410	99357478	ID=MsaG033793
Chr6	mRNA	99357478	99365410	99357478	ID=MsaT033793.1;Parent=MsaG033793
Chr6	exon	99357478	99357634	99357478	ID=MsaT033793.1.exon7;Parent=MsaT033793.1
Chr6	CDS	99357478	99357634	99357478	ID=cds.MsaT033793.1;Parent=MsaT033793.1
Chr6	exon	99357955	99358015	99357955	ID=MsaT033793.1.exon6;Parent=MsaT033793.1
Chr6	CDS	99357955	99358015	99357955	ID=cds.MsaT033793.1;Parent=MsaT033793.1
Chr6	exon	99358241	99358673	99358241	ID=MsaT033793.1.exon5;Parent=MsaT033793.1
Chr6	CDS	99358241	99358673	99358241	ID=cds.MsaT033793.1;Parent=MsaT033793.1
Chr6	exon	99358834	99358933	99358834	ID=MsaT033793.1.exon4;Parent=MsaT033793.1
Chr6	CDS	99358834	99358933	99358834	ID=cds.MsaT033793.1;Parent=MsaT033793.1
Chr6	exon	99359170	99359423	99359170	ID=MsaT033793.1.exon3;Parent=MsaT033793.1
Chr6	CDS	99359170	99359423	99359170	ID=cds.MsaT033793.1;Parent=MsaT033793.1
Chr6	exon	99361250	99361446	99361250	ID=MsaT033793.1.exon2;Parent=MsaT033793.1
Chr6	CDS	99361250	99361446	99361250	ID=cds.MsaT033793.1;Parent=MsaT033793.1
Chr6	exon	99365323	99365410	99365323	ID=MsaT033793.1.exon1;Parent=MsaT033793.1
Chr6	CDS	99365323	99365410	99365323	ID=cds.MsaT033793.1;Parent=MsaT033793.1

Gene Sequence

>MsaT033793.1

ATGGAAAGAGAATTCCTTGGCTTCAGTTCCAAAAATAGTCCATGGACTACCATGAAAGAAGATGCTTCCAACAAACCAAAGGACCAAGTTAGGAGTTCAGGAATGCAGTGGTCATTTTCAAATAAGGTTTCAAACCTTCCTCAATTCATGTCATTCAAGAATAACACTCATGAAGATAGGTCAAGAAACAGTGTTATGGATCCAGTAGCTTCATCAGGATATATGACTATTTCAACTAAAGATGCTTTTGAGTCTAATCATAAATCATTCTTGGGTGTGACACAGGAAAATTTGGCCATAAAGCAAGTAGGAAACAAGCATGGAATTACAATTTATCCCATCCAAAGTTCTGATGCACAATCAGTTTGCAATCAAGAAGCAAGAACATTTTCAGTTTCAAACCAATCTAATCATGTTACTACTGGAATCAACATGGTTAATTCAGTTACAAACTCACAAACTTTTGGTTCAAAATCCTCTGCCACACCTTTATCTGTTCTTCCCTCAAAAGGTCCCATAGTTGGCTCTACTGACTTAAGGAGTAGGAATTGTTCCAAATCCAATGGTACTACACCGGCTCAGTTGACCATATTTTATGGTGGTACAGTTTGTGTGTATGATGACATCTCTCCTGAGAAGGCTAAGGCAATCATGTTACTAGCTGGAAATGGCACTAAAATGCAGCAAGAAATCTCTATTCCTTCCAAAAAGGATAATTTCATTATAAGCCAACCCTATCCCTCACCATTGCCAAGCCCTCTTCCAATGACCTCTCATGCAAGTACTCAACCAAGGGGAGGATCAAGTAGCAACAATGAAGTCACAATAATAAGATCCTTAGGACCTTCAATTGCAAAGTCCTCTCACAATGACCTATCCCATCTCTCACCTTTGCCAAGTTCTCTCCCAATGACTTCTCATGCAAGTTCTTATCCCAAGGGAGGTTCAAGTAGCAACAATGAAGTCACAATAATAAGATCTTTAGGACCTTCAAATGCTTCTACTAACCATTTGGAATCTCCTATTGTTGCTACTTCTGTAGGATCAACACCTACAAATGTGATTCAACCAGTTGGACTGCCTCAGGCGCGAAAAGCATCGTTAACGCGGTTTTTGGAGAAGCGAAAGGAAAGGGCAATGAGCACATCACCATACTATATGAGCAAAAAATCACCTGAATGCAGCACTGGATCAGACAATGCTAGTTTCTCCATTGATTTCTCTGGTTCAAGTACTCAACCACCCACCAATTTGCCTTTAAGAAGAACATGTATGGAAGTGATTAGATAA

Protein sequence

>MsaT033793.1

MEREFLGFSSKNSPWTTMKEDASNKPKDQVRSSGMQWSFSNKVSNLPQFMSFKNNTHEDRSRNSVMDPVASSGYMTISTKDAFESNHKSFLGVTQENLAIKQVGNKHGITIYPIQSSDAQSVCNQEARTFSVSNQSNHVTTGINMVNSVTNSQTFGSKSSATPLSVLPSKGPIVGSTDLRSRNCSKSNGTTPAQLTIFYGGTVCVYDDISPEKAKAIMLLAGNGTKMQQEISIPSKKDNFIISQPYPSPLPSPLPMTSHASTQPRGGSSSNNEVTIIRSLGPSIAKSSHNDLSHLSPLPSSLPMTSHASSYPKGGSSSNNEVTIIRSLGPSNASTNHLESPIVATSVGSTPTNVIQPVGLPQARKASLTRFLEKRKERAMSTSPYYMSKKSPECSTGSDNASFSIDFSGSSTQPPTNLPLRRTCMEVIR*