AlfalfaGEDB | MsaG033858

M. sativa ssp. caerulea / MsaG033858

KEGG: K20794
GO: GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031365 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0043998 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0051604 GO:0061733 GO:0071704 GO:0071840 GO:1901564 GO:1990189
PFAM: PF00583.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033858	AES76151.1	90.370	135	13	0	1	135	88	222	5.19e-84	256

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033858	sp\|Q568K5\|NAA40_DANRE	37.209	129	57	2	7	135	88	192	2.22e-17	78.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033858	tr\|G7KHW9\|G7KHW9_MEDTR	90.370	135	13	0	1	135	88	222	2.48e-84	256

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TFs/TRs:

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Gene ID	Type	Classification
MsaG033858	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000006	MsaG033858	0.802055	1.128707e-48	1.598741e-46
MsaG000015	MsaG033858	0.810627	1.796394e-50	3.114946e-48
MsaG000045	MsaG033858	0.810428	1.982021e-50	3.420359e-48
MsaG000083	MsaG033858	0.839378	3.028951e-57	1.159522e-54
MsaG000113	MsaG033858	0.805478	2.214148e-49	3.394256e-47
MsaG000115	MsaG033858	0.823923	1.886671e-53	4.608477e-51
MsaG000151	MsaG033858	0.802205	1.052101e-48	1.495291e-46
MsaG000235	MsaG033858	0.803978	4.539021e-49	6.720326e-47
MsaG000236	MsaG033858	0.862829	7.614320e-64	6.601060e-61
MsaG000242	MsaG033858	0.811850	9.779493e-51	1.747381e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033858	MtrunA17_Chr6g0479551	90.370	135	13	0	1	135	88	222	5.10e-88	256

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033858	AT1G18335.3	57.037	135	51	1	1	135	99	226	3.52e-45	148
MsaG033858	AT1G18335.2	57.037	135	51	1	1	135	99	226	3.52e-45	148
MsaG033858	AT1G18335.1	57.037	135	51	1	1	135	99	226	4.27e-45	148

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Find 33 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTGAAGCGTAGAGAAA+TGG	0.460189	6:-100836885	MsaT033858.1:CDS
AAGGGCCATATGGATCTGAG+TGG	0.737924	6:-100836919	MsaT033858.1:CDS
AATCCTTTCCCCTGGACACG+AGG	0.597062	6:+100836665	None:intergenic
AATCTACAGCTTAACATGGA+AGG	0.544882	6:-100836938	None:intergenic
ACAAATATATAGCGTGCTTC+AGG	0.453405	6:+100836857	None:intergenic
ACAGCTCGAGCCTCGTGTCC+AGG	0.444598	6:-100836675	MsaT033858.1:CDS
ACGCTATATATTTGTGCATG+AGG	0.569652	6:-100836849	MsaT033858.1:CDS
ACTAGTCGTCAAGAAGATAG+TGG	0.589965	6:-100836770	MsaT033858.1:CDS
AGCTCGAGCCTCGTGTCCAG+GGG	0.623716	6:-100836673	MsaT033858.1:CDS
AGGATTGGGAAAGCTTCTAA+TGG	0.474839	6:-100836648	MsaT033858.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	100836099	100836945	100836099	ID=MsaG033858
Chr6	mRNA	100836099	100836945	100836099	ID=MsaT033858.1;Parent=MsaG033858
Chr6	exon	100836099	100836108	100836099	ID=MsaT033858.1.exon3;Parent=MsaT033858.1
Chr6	CDS	100836099	100836108	100836099	ID=cds.MsaT033858.1;Parent=MsaT033858.1
Chr6	exon	100836297	100836373	100836297	ID=MsaT033858.1.exon2;Parent=MsaT033858.1
Chr6	CDS	100836297	100836373	100836297	ID=cds.MsaT033858.1;Parent=MsaT033858.1
Chr6	exon	100836622	100836945	100836622	ID=MsaT033858.1.exon1;Parent=MsaT033858.1
Chr6	CDS	100836622	100836945	100836622	ID=cds.MsaT033858.1;Parent=MsaT033858.1

Gene Sequence

>MsaT033858.1

ATGGAAGGGCCATATGGATCTGAGTGGCAAGAGGAAGAAAAGGTGAAGCGTAGAGAAATGGTTGATCCTGAAGCACGCTATATATTTGTGCATGAGGTTACTAATGCAAATGCTGACGAGATGACAACAGTGTTGGCTGAGGAAGATCCTTCAACTAGTCGTCAAGAAGATAGTGGTCCCTTGGTTGGATTTGTACATTACCGCTTTGTTTTGGAAGAAGAGGTACCAGTACTTTATGTGTATGAACTACAGCTCGAGCCTCGTGTCCAGGGGAAAGGATTGGGAAAGCTTCTAATGGAACTTATTGAGCTTATCGCCCAAAAGAACTGCATGGGTGCTGTCGTGCTAACTGTTCAAAGGGCGAACATATCAGCTATGAATTTTTACACTAGTAAACTAAGGTATTCCTGA

Protein sequence

>MsaT033858.1

MEGPYGSEWQEEEKVKRREMVDPEARYIFVHEVTNANADEMTTVLAEEDPSTSRQEDSGPLVGFVHYRFVLEEEVPVLYVYELQLEPRVQGKGLGKLLMELIELIAQKNCMGAVVLTVQRANISAMNFYTSKLRYS*