AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG033858


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG033858 MtrunA17_Chr6g0479551 90.370 135 13 0 1 135 88 222 5.10e-88 256
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG033858 AT1G18335.3 57.037 135 51 1 1 135 99 226 3.52e-45 148
MsaG033858 AT1G18335.2 57.037 135 51 1 1 135 99 226 3.52e-45 148
MsaG033858 AT1G18335.1 57.037 135 51 1 1 135 99 226 4.27e-45 148

Find 33 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTACATTACCGCTTTGTTT+TGG 0.388601 6:-100836732 MsaT033858.1:CDS
CGTGTCCAGGGGAAAGGATT+GGG 0.426522 6:-100836662 MsaT033858.1:CDS
ACAGCTCGAGCCTCGTGTCC+AGG 0.444598 6:-100836675 MsaT033858.1:CDS
ACAAATATATAGCGTGCTTC+AGG 0.453405 6:+100836857 None:intergenic
TCTTCTTGACGACTAGTTGA+AGG 0.460099 6:+100836776 None:intergenic
AAAGGTGAAGCGTAGAGAAA+TGG 0.460189 6:-100836885 MsaT033858.1:CDS
CTTAACATGGAAGGGCCATA+TGG 0.467460 6:-100836929 None:intergenic
GCTTTCCCAATCCTTTCCCC+TGG 0.468580 6:+100836657 None:intergenic
AGGATTGGGAAAGCTTCTAA+TGG 0.474839 6:-100836648 MsaT033858.1:CDS
CTGTCGTGCTAACTGTTCAA+AGG 0.475803 6:-100836338 MsaT033858.1:CDS
CAGCTCGAGCCTCGTGTCCA+GGG 0.491833 6:-100836674 MsaT033858.1:CDS
GAAGATAGTGGTCCCTTGGT+TGG 0.492453 6:-100836758 MsaT033858.1:CDS
TATTGAGCTTATCGCCCAAA+AGG 0.500241 6:-100836621 MsaT033858.1:intron
TCTTGCCACTCAGATCCATA+TGG 0.513626 6:+100836914 None:intergenic
TCGTGTCCAGGGGAAAGGAT+TGG 0.525244 6:-100836663 MsaT033858.1:CDS
TGAGTGGCAAGAGGAAGAAA+AGG 0.525897 6:-100836903 MsaT033858.1:CDS
ATCTACAGCTTAACATGGAA+GGG 0.529467 6:-100836937 None:intergenic
GAGCCTCGTGTCCAGGGGAA+AGG 0.535185 6:-100836668 MsaT033858.1:CDS
AATCTACAGCTTAACATGGA+AGG 0.544882 6:-100836938 None:intergenic
TCAAGAAGATAGTGGTCCCT+TGG 0.557490 6:-100836762 MsaT033858.1:CDS
ACGCTATATATTTGTGCATG+AGG 0.569652 6:-100836849 MsaT033858.1:CDS
AGTTCATACACATAAAGTAC+TGG 0.583472 6:+100836698 None:intergenic
TGTCGTGCTAACTGTTCAAA+GGG 0.585683 6:-100836337 MsaT033858.1:CDS
ACTAGTCGTCAAGAAGATAG+TGG 0.589965 6:-100836770 MsaT033858.1:CDS
AATCCTTTCCCCTGGACACG+AGG 0.597062 6:+100836665 None:intergenic
GATGACAACAGTGTTGGCTG+AGG 0.613629 6:-100836804 MsaT033858.1:CDS
AGCTCGAGCCTCGTGTCCAG+GGG 0.623716 6:-100836673 MsaT033858.1:CDS
ATATGGATCTGAGTGGCAAG+AGG 0.653218 6:-100836912 MsaT033858.1:CDS
TGACGAGATGACAACAGTGT+TGG 0.659639 6:-100836810 MsaT033858.1:CDS
TAATGTACAAATCCAACCAA+GGG 0.669573 6:+100836746 None:intergenic
GTAATGTACAAATCCAACCA+AGG 0.669580 6:+100836745 None:intergenic
CCTCTTCTTCCAAAACAAAG+CGG 0.723548 6:+100836723 None:intergenic
AAGGGCCATATGGATCTGAG+TGG 0.737924 6:-100836919 MsaT033858.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr6 gene 100836099 100836945 100836099 ID=MsaG033858
Chr6 mRNA 100836099 100836945 100836099 ID=MsaT033858.1;Parent=MsaG033858
Chr6 exon 100836099 100836108 100836099 ID=MsaT033858.1.exon3;Parent=MsaT033858.1
Chr6 CDS 100836099 100836108 100836099 ID=cds.MsaT033858.1;Parent=MsaT033858.1
Chr6 exon 100836297 100836373 100836297 ID=MsaT033858.1.exon2;Parent=MsaT033858.1
Chr6 CDS 100836297 100836373 100836297 ID=cds.MsaT033858.1;Parent=MsaT033858.1
Chr6 exon 100836622 100836945 100836622 ID=MsaT033858.1.exon1;Parent=MsaT033858.1
Chr6 CDS 100836622 100836945 100836622 ID=cds.MsaT033858.1;Parent=MsaT033858.1
Gene Sequence

>MsaT033858.1

ATGGAAGGGCCATATGGATCTGAGTGGCAAGAGGAAGAAAAGGTGAAGCGTAGAGAAATGGTTGATCCTGAAGCACGCTATATATTTGTGCATGAGGTTACTAATGCAAATGCTGACGAGATGACAACAGTGTTGGCTGAGGAAGATCCTTCAACTAGTCGTCAAGAAGATAGTGGTCCCTTGGTTGGATTTGTACATTACCGCTTTGTTTTGGAAGAAGAGGTACCAGTACTTTATGTGTATGAACTACAGCTCGAGCCTCGTGTCCAGGGGAAAGGATTGGGAAAGCTTCTAATGGAACTTATTGAGCTTATCGCCCAAAAGAACTGCATGGGTGCTGTCGTGCTAACTGTTCAAAGGGCGAACATATCAGCTATGAATTTTTACACTAGTAAACTAAGGTATTCCTGA

Protein sequence

>MsaT033858.1

MEGPYGSEWQEEEKVKRREMVDPEARYIFVHEVTNANADEMTTVLAEEDPSTSRQEDSGPLVGFVHYRFVLEEEVPVLYVYELQLEPRVQGKGLGKLLMELIELIAQKNCMGAVVLTVQRANISAMNFYTSKLRYS*