Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG033878 | XP_039682605.1 | 98.270 | 289 | 5 | 0 | 1 | 289 | 1 | 289 | 0.0 | 590 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG033878 | sp|Q9SKD0|BPC1_ARATH | 51.163 | 301 | 117 | 10 | 1 | 289 | 1 | 283 | 1.08e-93 | 281 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG033878 | tr|A0A396HIF8|A0A396HIF8_MEDTR | 98.270 | 289 | 5 | 0 | 1 | 289 | 1 | 289 | 0.0 | 590 |
Gene ID | Type | Classification |
---|---|---|
MsaG033878 | TF | BBR-BPC |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG000863 | MsaG033878 | 0.819069 | 2.462243e-52 | 5.284226e-50 |
MsaG002435 | MsaG033878 | 0.831768 | 2.500027e-55 | 7.614455e-53 |
MsaG002477 | MsaG033878 | 0.827850 | 2.226472e-54 | 6.062998e-52 |
MsaG002826 | MsaG033878 | 0.871408 | 1.428824e-66 | 1.757731e-63 |
MsaG002888 | MsaG033878 | 0.855974 | 8.532742e-62 | 5.710180e-59 |
MsaG005330 | MsaG033878 | 0.804818 | 3.039485e-49 | 4.588671e-47 |
MsaG005434 | MsaG033878 | 0.883412 | 9.807691e-71 | 2.080087e-67 |
MsaG005847 | MsaG033878 | 0.839545 | 2.742623e-57 | 1.055419e-54 |
MsaG006759 | MsaG033878 | 0.842689 | 4.130218e-58 | 1.755914e-55 |
MsaG007048 | MsaG033878 | 0.814253 | 2.923548e-51 | 5.546161e-49 |
MsaG007372 | MsaG033878 | 0.816881 | 7.647688e-52 | 1.550868e-49 |
MsaG007928 | MsaG033878 | 0.801771 | 1.290645e-48 | 1.816295e-46 |
MsaG008470 | MsaG033878 | 0.824677 | 1.256317e-53 | 3.132478e-51 |
MsaG008892 | MsaG033878 | 0.899865 | 2.980422e-77 | 1.512693e-73 |
MsaG009484 | MsaG033878 | 0.853850 | 3.503898e-61 | 2.172586e-58 |
MsaG009757 | MsaG033878 | 0.827045 | 3.464091e-54 | 9.222655e-52 |
MsaG009922 | MsaG033878 | 0.832324 | 1.824004e-55 | 5.645395e-53 |
MsaG010331 | MsaG033878 | 0.814001 | 3.320774e-51 | 6.259987e-49 |
MsaG010332 | MsaG033878 | 0.865051 | 1.561667e-64 | 1.478444e-61 |
MsaG010334 | MsaG033878 | 0.860885 | 2.978256e-63 | 2.394946e-60 |
MsaG010573 | MsaG033878 | 0.877112 | 1.702260e-68 | 2.690515e-65 |
MsaG011229 | MsaG033878 | 0.834975 | 4.000471e-56 | 1.338991e-53 |
MsaG011413 | MsaG033878 | 0.889432 | 5.341590e-73 | 1.528605e-69 |
MsaG012834 | MsaG033878 | 0.804245 | 3.997706e-49 | 5.955604e-47 |
MsaG013093 | MsaG033878 | 0.809296 | 3.463731e-50 | 5.815062e-48 |
MsaG013438 | MsaG033878 | 0.801064 | 1.798319e-48 | 2.490444e-46 |
MsaG013453 | MsaG033878 | 0.850041 | 4.176173e-60 | 2.266433e-57 |
MsaG013804 | MsaG033878 | 0.801326 | 1.590714e-48 | 2.216114e-46 |
MsaG013851 | MsaG033878 | 0.811662 | 1.074010e-50 | 1.910124e-48 |
MsaG013999 | MsaG033878 | 0.808208 | 5.901812e-50 | 9.652564e-48 |
MsaG014000 | MsaG033878 | 0.800862 | 1.976593e-48 | 2.724982e-46 |
MsaG014252 | MsaG033878 | 0.809676 | 2.872305e-50 | 4.866867e-48 |
MsaG015363 | MsaG033878 | 0.808340 | 5.533969e-50 | 9.079588e-48 |
MsaG015547 | MsaG033878 | 0.804516 | 3.512457e-49 | 5.265541e-47 |
MsaG015621 | MsaG033878 | 0.860824 | 3.107956e-63 | 2.493586e-60 |
MsaG015725 | MsaG033878 | 0.802709 | 8.292744e-49 | 1.192285e-46 |
MsaG015733 | MsaG033878 | 0.816664 | 8.548020e-52 | 1.723748e-49 |
MsaG015769 | MsaG033878 | 0.822996 | 3.099833e-53 | 7.384259e-51 |
MsaG016112 | MsaG033878 | 0.821226 | 7.936577e-53 | 1.803151e-50 |
MsaG016504 | MsaG033878 | 0.830688 | 4.592680e-55 | 1.355520e-52 |
MsaG016714 | MsaG033878 | 0.806478 | 1.367513e-49 | 2.146460e-47 |
MsaG016718 | MsaG033878 | 0.820132 | 1.412242e-52 | 3.117037e-50 |
MsaG017789 | MsaG033878 | 0.811433 | 1.203839e-50 | 2.129044e-48 |
MsaG018787 | MsaG033878 | 0.803663 | 5.273393e-49 | 7.750804e-47 |
MsaG019455 | MsaG033878 | 0.803580 | 5.485935e-49 | 8.047591e-47 |
MsaG020193 | MsaG033878 | 0.853796 | 3.630506e-61 | 2.246878e-58 |
MsaG020221 | MsaG033878 | 0.816434 | 9.620247e-52 | 1.928560e-49 |
MsaG021335 | MsaG033878 | 0.801777 | 1.286951e-48 | 1.811353e-46 |
MsaG021799 | MsaG033878 | 0.897520 | 2.951760e-76 | 1.309538e-72 |
MsaG022074 | MsaG033878 | 0.819597 | 1.869369e-52 | 4.067555e-50 |
MsaG022388 | MsaG033878 | 0.863700 | 4.105366e-64 | 3.683297e-61 |
MsaG024762 | MsaG033878 | 0.834226 | 6.158948e-56 | 2.015741e-53 |
MsaG025770 | MsaG033878 | 0.837460 | 9.412527e-57 | 3.395637e-54 |
MsaG028557 | MsaG033878 | 0.882452 | 2.194483e-70 | 4.444022e-67 |
MsaG028740 | MsaG033878 | 0.821240 | 7.877916e-53 | 1.790477e-50 |
MsaG030244 | MsaG033878 | 0.807010 | 1.056943e-49 | 1.679844e-47 |
MsaG030382 | MsaG033878 | 0.840183 | 1.873991e-57 | 7.357625e-55 |
MsaG030657 | MsaG033878 | 0.872644 | 5.569784e-67 | 7.225452e-64 |
MsaG030768 | MsaG033878 | 0.806315 | 1.480095e-49 | 2.314177e-47 |
MsaG030833 | MsaG033878 | 0.847929 | 1.602113e-59 | 8.094264e-57 |
MsaG031347 | MsaG033878 | 0.802272 | 1.019135e-48 | 1.450709e-46 |
MsaG031419 | MsaG033878 | 0.822872 | 3.311660e-53 | 7.862646e-51 |
MsaG032531 | MsaG033878 | 0.891867 | 5.948071e-74 | 1.934188e-70 |
MsaG032896 | MsaG033878 | 0.807250 | 9.409371e-50 | 1.503930e-47 |
MsaG033732 | MsaG033878 | 0.808434 | 5.283873e-50 | 8.689080e-48 |
MsaG033878 | MsaG034933 | 0.917534 | 1.190911e-85 | 1.879239e-81 |
MsaG033878 | MsaG036271 | 0.839696 | 2.506532e-57 | 9.692199e-55 |
MsaG033878 | MsaG036689 | 0.829756 | 7.737390e-55 | 2.223619e-52 |
MsaG033878 | MsaG037276 | 0.809149 | 3.723713e-50 | 6.229766e-48 |
MsaG033878 | MsaG037332 | 0.893880 | 9.306726e-75 | 3.373226e-71 |
MsaG033878 | MsaG037333 | 0.837557 | 8.889794e-57 | 3.216486e-54 |
MsaG033878 | MsaG037736 | 0.813305 | 4.717617e-51 | 8.739025e-49 |
MsaG033878 | MsaG038298 | 0.805029 | 2.747145e-49 | 4.167799e-47 |
MsaG033878 | MsaG039182 | 0.832412 | 1.735872e-55 | 5.386242e-53 |
MsaG033878 | MsaG039274 | 0.836172 | 1.998054e-56 | 6.932301e-54 |
MsaG033878 | MsaG039394 | 0.813557 | 4.154311e-51 | 7.744853e-49 |
MsaG033878 | MsaG040039 | 0.863928 | 3.491400e-64 | 3.160220e-61 |
MsaG033878 | MsaG040742 | 0.851746 | 1.389262e-60 | 7.998038e-58 |
MsaG033878 | MsaG040955 | 0.832694 | 1.478176e-55 | 4.624527e-53 |
MsaG033878 | MsaG041114 | 0.835148 | 3.620087e-56 | 1.217954e-53 |
MsaG033878 | MsaG041557 | 0.873708 | 2.456745e-67 | 3.338620e-64 |
MsaG033878 | MsaG041550 | 0.860403 | 4.161772e-63 | 3.286600e-60 |
MsaG033878 | MsaG041563 | 0.861271 | 2.274765e-63 | 1.856374e-60 |
MsaG033878 | MsaG041623 | 0.834592 | 4.989956e-56 | 1.651211e-53 |
MsaG033878 | MsaG041624 | 0.837907 | 7.236230e-57 | 2.646355e-54 |
MsaG033878 | MsaG041862 | 0.826378 | 4.989500e-54 | 1.303962e-51 |
MsaG033878 | MsaG042827 | 0.806212 | 1.555559e-49 | 2.426271e-47 |
MsaG033878 | MsaG042841 | 0.809954 | 2.504466e-50 | 4.272202e-48 |
MsaG033878 | MsaG044568 | 0.854044 | 3.082078e-61 | 1.924352e-58 |
MsaG033878 | MsaG044703 | 0.909135 | 1.914576e-81 | 1.711072e-77 |
MsaG033878 | MsaG045139 | 0.820161 | 1.390769e-52 | 3.072004e-50 |
MsaG033878 | MsaG045121 | 0.806276 | 1.507737e-49 | 2.355281e-47 |
MsaG033878 | MsaG045122 | 0.823324 | 2.601475e-53 | 6.252413e-51 |
MsaG033878 | MsaG045152 | 0.837453 | 9.448127e-57 | 3.407775e-54 |
MsaG033878 | MsaG045295 | 0.815486 | 1.562309e-51 | 3.057351e-49 |
MsaG033878 | MsaG045314 | 0.800512 | 2.328368e-48 | 3.184683e-46 |
MsaG033878 | MsaG045333 | 0.804545 | 3.463727e-49 | 5.196062e-47 |
MsaG033878 | MsaG045348 | 0.869949 | 4.289585e-66 | 4.960692e-63 |
MsaG033878 | MsaG046304 | 0.846095 | 5.065437e-59 | 2.406689e-56 |
MsaG033878 | MsaG046347 | 0.817137 | 6.702218e-52 | 1.368196e-49 |
MsaG033878 | MsaG046348 | 0.841791 | 7.121893e-58 | 2.941876e-55 |
MsaG033878 | MsaG002656 | 0.825833 | 6.717491e-54 | 1.729140e-51 |
MsaG033878 | MsaG000781 | 0.846698 | 3.474085e-59 | 1.684037e-56 |
MsaG033878 | MsaG013963 | 0.837430 | 9.580248e-57 | 3.452893e-54 |
MsaG033878 | MsaG020089 | 0.857590 | 2.868777e-62 | 2.037203e-59 |
MsaG033878 | MsaG018616 | 0.931511 | 9.341033e-94 | 4.303971e-89 |
MsaG033878 | MsaG018883 | 0.813862 | 3.561537e-51 | 6.690762e-49 |
MsaG033878 | MsaG020276 | 0.834722 | 4.629139e-56 | 1.537824e-53 |
MsaG033878 | MsaG026757 | 0.888768 | 9.633113e-73 | 2.662832e-69 |
MsaG033878 | MsaG029709 | 0.872093 | 8.487303e-67 | 1.075207e-63 |
MsaG033878 | MsaG027799 | 0.841830 | 6.957051e-58 | 2.877372e-55 |
MsaG033878 | MsaG031442 | 0.811231 | 1.330729e-50 | 2.341851e-48 |
MsaG033878 | MsaG033152 | 0.830541 | 4.988386e-55 | 1.466090e-52 |
MsaG033878 | MsaG033431 | 0.809031 | 3.945457e-50 | 6.582018e-48 |
MsaG033878 | MsaG045464 | 0.803385 | 6.017509e-49 | 8.787925e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG033878 | MtrunA17_Chr6g0479911 | 98.270 | 289 | 5 | 0 | 1 | 289 | 1 | 289 | 0.0 | 590 |
MsaG033878 | MtrunA17_Chr8g0375531 | 52.577 | 291 | 120 | 10 | 4 | 289 | 3 | 280 | 2.88e-82 | 249 |
MsaG033878 | MtrunA17_Chr1g0156031 | 55.263 | 114 | 51 | 0 | 176 | 289 | 227 | 340 | 1.30e-45 | 157 |
MsaG033878 | MtrunA17_Chr8g0385961 | 32.806 | 253 | 163 | 4 | 40 | 289 | 64 | 312 | 1.38e-44 | 153 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG033878 | AT2G01930.2 | 51.163 | 301 | 117 | 10 | 1 | 289 | 1 | 283 | 1.09e-94 | 281 |
MsaG033878 | AT2G01930.1 | 51.163 | 301 | 117 | 10 | 1 | 289 | 1 | 283 | 1.09e-94 | 281 |
MsaG033878 | AT1G14685.1 | 50.847 | 295 | 123 | 8 | 1 | 289 | 1 | 279 | 3.67e-88 | 264 |
MsaG033878 | AT1G14685.4 | 50.847 | 295 | 123 | 8 | 1 | 289 | 1 | 279 | 3.67e-88 | 264 |
MsaG033878 | AT1G14685.3 | 50.847 | 295 | 123 | 8 | 1 | 289 | 1 | 279 | 3.67e-88 | 264 |
MsaG033878 | AT1G14685.2 | 50.847 | 295 | 123 | 8 | 1 | 289 | 1 | 279 | 3.67e-88 | 264 |
MsaG033878 | AT1G68120.1 | 46.780 | 295 | 120 | 10 | 4 | 289 | 3 | 269 | 7.89e-77 | 235 |
MsaG033878 | AT2G35550.2 | 54.422 | 147 | 65 | 2 | 143 | 289 | 82 | 226 | 6.32e-50 | 165 |
MsaG033878 | AT2G35550.4 | 54.422 | 147 | 65 | 2 | 143 | 289 | 82 | 226 | 6.32e-50 | 165 |
MsaG033878 | AT2G35550.3 | 54.422 | 147 | 65 | 2 | 143 | 289 | 82 | 226 | 6.32e-50 | 165 |
MsaG033878 | AT2G35550.1 | 54.422 | 147 | 65 | 2 | 143 | 289 | 127 | 271 | 8.75e-50 | 166 |
MsaG033878 | AT2G21240.1 | 32.830 | 265 | 163 | 5 | 28 | 289 | 44 | 296 | 4.99e-44 | 152 |
MsaG033878 | AT2G21240.2 | 32.830 | 265 | 163 | 5 | 28 | 289 | 44 | 296 | 4.99e-44 | 152 |
MsaG033878 | AT5G42520.3 | 56.075 | 107 | 46 | 1 | 184 | 289 | 176 | 282 | 5.52e-42 | 146 |
MsaG033878 | AT5G42520.2 | 56.075 | 107 | 46 | 1 | 184 | 289 | 232 | 338 | 8.08e-42 | 147 |
MsaG033878 | AT5G42520.1 | 56.075 | 107 | 46 | 1 | 184 | 289 | 236 | 342 | 1.09e-41 | 147 |
MsaG033878 | AT4G38910.1 | 43.478 | 138 | 77 | 1 | 152 | 289 | 122 | 258 | 1.24e-41 | 144 |
MsaG033878 | AT4G38910.2 | 43.478 | 138 | 77 | 1 | 152 | 289 | 147 | 283 | 1.75e-41 | 145 |
Find 97 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCATATCACCATCGGGAAAT+TGG | 0.178341 | 6:+101335807 | MsaT033878.1:CDS |
CGATAGATTTGAGGACTTAT+TGG | 0.234611 | 6:+101336456 | MsaT033878.1:CDS |
TGCAATTAACGGGATTGATT+TGG | 0.279573 | 6:+101336199 | MsaT033878.1:CDS |
GATAGATTTGAGGACTTATT+GGG | 0.312732 | 6:+101336457 | MsaT033878.1:CDS |
CCAACAAGTTTGTTACTATC+AGG | 0.343708 | 6:+101336492 | MsaT033878.1:CDS |
GCCTCAAACTACTTACCCTT+TGG | 0.344791 | 6:+101335833 | MsaT033878.1:CDS |
ATTCCTGTTTGTTCTTGCAC+TGG | 0.347046 | 6:+101336239 | MsaT033878.1:CDS |
CTTACCCTTTGGATTATATG+AGG | 0.349085 | 6:+101335844 | MsaT033878.1:CDS |
CACCTCAACAATGTTATAGA+TGG | 0.355446 | 6:+101336264 | MsaT033878.1:CDS |
ATGGACTTAACATAAGCAAT+TGG | 0.360767 | 6:+101335661 | MsaT033878.1:CDS |
TTTCTAATCCGATAGATTTG+AGG | 0.399273 | 6:+101336447 | MsaT033878.1:CDS |
AATGATTCGACCATGTGAAT+TGG | 0.408906 | 6:+101335983 | MsaT033878.1:CDS |
CATATCACCATCGGGAAATT+GGG | 0.409037 | 6:+101335808 | MsaT033878.1:CDS |
CCGGAAAAGCCGCCTCTGAT+TGG | 0.413055 | 6:+101335747 | MsaT033878.1:CDS |
TGGACTTAACATAAGCAATT+GGG | 0.420997 | 6:+101335662 | MsaT033878.1:CDS |
CTACGGAAATTGCAATTAAC+GGG | 0.422090 | 6:+101336189 | MsaT033878.1:CDS |
TTAGGAGACTTCGGCACCTT+CGG | 0.426454 | 6:-101336080 | None:intergenic |
TCGACCATGTGAATTGGTTA+AGG | 0.427145 | 6:+101335989 | MsaT033878.1:CDS |
ACTACGGAAATTGCAATTAA+CGG | 0.434305 | 6:+101336188 | MsaT033878.1:CDS |
CCTGATAGTAACAAACTTGT+TGG | 0.444146 | 6:-101336492 | None:intergenic |
CTATAACCTGGAGGGTTAGT+AGG | 0.446214 | 6:-101335921 | None:intergenic |
CGAAATGCCGCGGTTATGTC+GGG | 0.452368 | 6:+101335774 | MsaT033878.1:CDS |
CTCTTCGGCTTCTTTGCCTT+AGG | 0.455380 | 6:-101336098 | None:intergenic |
ACCACAGGTGCTTCCTCCAT+TGG | 0.459398 | 6:-101336020 | None:intergenic |
TAATTTAGTGTTGTAATGGA+TGG | 0.462352 | 6:+101335633 | None:intergenic |
ATAGATGGGGCTCGGGTGGA+TGG | 0.464652 | 6:+101336279 | MsaT033878.1:CDS |
TTCCTGTTTGTTCTTGCACT+GGG | 0.468493 | 6:+101336240 | MsaT033878.1:CDS |
TGATTCTTAAAAGATGAAAC+AGG | 0.473276 | 6:-101335696 | None:intergenic |
AGGTTATAGTACTAGTATTC+CGG | 0.475931 | 6:+101335935 | MsaT033878.1:CDS |
GTTGTAATGGATGGAGATAA+TGG | 0.478647 | 6:+101335642 | None:intergenic |
ACAATGTTATAGATGGGGCT+CGG | 0.487220 | 6:+101336271 | MsaT033878.1:CDS |
GGCACACGAGGTCCTCTCTT+CGG | 0.493154 | 6:-101336113 | None:intergenic |
CCATTCACCTTCTCGACCAC+AGG | 0.494618 | 6:-101336035 | None:intergenic |
ACAACTGATGCCATCGATGC+CGG | 0.499881 | 6:+101335728 | MsaT033878.1:CDS |
TTCTTTGCCTTAGGAGACTT+CGG | 0.501514 | 6:-101336089 | None:intergenic |
GTCCCAGTGCAAGAACAAAC+AGG | 0.501675 | 6:-101336242 | None:intergenic |
TCGAAATGCCGCGGTTATGT+CGG | 0.501909 | 6:+101335773 | MsaT033878.1:CDS |
GTGCAAGAACAAACAGGAAT+CGG | 0.503075 | 6:-101336236 | None:intergenic |
GAAGGAGAATTCTCGTCCTT+CGG | 0.503811 | 6:-101336134 | None:intergenic |
CAATGTTATAGATGGGGCTC+GGG | 0.507375 | 6:+101336272 | MsaT033878.1:CDS |
CCTGTGGTCGAGAAGGTGAA+TGG | 0.509475 | 6:+101336035 | MsaT033878.1:CDS |
ACCTCAACAATGTTATAGAT+GGG | 0.523017 | 6:+101336265 | MsaT033878.1:CDS |
CCGCGTCGTTTAGTACTCAT+AGG | 0.528654 | 6:-101336344 | None:intergenic |
CAATAAGTCCTCAAATCTAT+CGG | 0.528692 | 6:-101336455 | None:intergenic |
GTCGAGAAGGTGAATGGAAC+TGG | 0.530658 | 6:+101336041 | MsaT033878.1:CDS |
TCCAAAGGGTAAGTAGTTTG+AGG | 0.531276 | 6:-101335834 | None:intergenic |
GAAGGACGAGAATTCTCCTT+CGG | 0.531353 | 6:+101336136 | MsaT033878.1:CDS |
CTTGGTGTTCGTTGAACCGA+AGG | 0.532361 | 6:-101336152 | None:intergenic |
TTACCCTTTGGATTATATGA+GGG | 0.536203 | 6:+101335845 | MsaT033878.1:CDS |
CATCCCTCATATAATCCAAA+GGG | 0.541845 | 6:-101335848 | None:intergenic |
TGTTATAGATGGGGCTCGGG+TGG | 0.542239 | 6:+101336275 | MsaT033878.1:CDS |
TGGATTATATGAGGGATGCA+TGG | 0.548813 | 6:+101335853 | MsaT033878.1:CDS |
TTCTCGTCCTTCGGCACACG+AGG | 0.552572 | 6:-101336125 | None:intergenic |
TAACGGTGCATATCACCATC+GGG | 0.558932 | 6:+101335800 | MsaT033878.1:CDS |
ATTAGAGAAACTTGCAGCCG+AGG | 0.559521 | 6:+101336415 | MsaT033878.1:CDS |
ATTAGAAAAGTTATAACCCT+CGG | 0.560267 | 6:-101336432 | None:intergenic |
AGGACTTATTGGGCAAAACA+TGG | 0.561945 | 6:+101336467 | MsaT033878.1:CDS |
ATGATACCTACTAACCCTCC+AGG | 0.562585 | 6:+101335915 | MsaT033878.1:CDS |
GAGAGGACCTCGTGTGCCGA+AGG | 0.571472 | 6:+101336118 | MsaT033878.1:CDS |
GCCGGAAGGAAAATGAGTAT+AGG | 0.573233 | 6:+101336377 | MsaT033878.1:CDS |
TTAGAGAAACTTGCAGCCGA+GGG | 0.574547 | 6:+101336416 | MsaT033878.1:CDS |
CGACGCGGTGCTAGAATAGC+CGG | 0.576753 | 6:+101336359 | MsaT033878.1:CDS |
TGATGAGCTGAAGATGTCTC+CGG | 0.579222 | 6:-101335954 | None:intergenic |
GCGGTTATGTCGGGAACTAA+CGG | 0.579757 | 6:+101335783 | MsaT033878.1:CDS |
GGAAGCACCTGTGGTCGAGA+AGG | 0.588134 | 6:+101336028 | MsaT033878.1:CDS |
GAAGGTGCCGAAGTCTCCTA+AGG | 0.590939 | 6:+101336082 | MsaT033878.1:CDS |
GCATCCCTCATATAATCCAA+AGG | 0.600896 | 6:-101335849 | None:intergenic |
GGACTTAACATAAGCAATTG+GGG | 0.601047 | 6:+101335663 | MsaT033878.1:CDS |
TTCGGTTCAACGAACACCAA+GGG | 0.601561 | 6:+101336154 | MsaT033878.1:CDS |
GCATTTCGACTTCCAATCAG+AGG | 0.603067 | 6:-101335759 | None:intergenic |
CAAGTTTGTTACTATCAGGT+AGG | 0.604667 | 6:+101336496 | MsaT033878.1:CDS |
GCCAATGGAGGAAGCACCTG+TGG | 0.607095 | 6:+101336019 | MsaT033878.1:CDS |
CTAACGGTGCATATCACCAT+CGG | 0.608113 | 6:+101335799 | MsaT033878.1:CDS |
AAGGGCACAAAAGAAAACTA+CGG | 0.609634 | 6:+101336172 | MsaT033878.1:CDS |
CGTTTAGTACTCATAGGCAA+AGG | 0.610952 | 6:-101336338 | None:intergenic |
ATGCATGGATTAGTAGTCAG+AGG | 0.611474 | 6:+101335868 | MsaT033878.1:CDS |
GAGGCATCCCAATTTCCCGA+TGG | 0.615246 | 6:-101335815 | None:intergenic |
AAGGCAAAGAAGCCGAAGAG+AGG | 0.622231 | 6:+101336101 | MsaT033878.1:CDS |
CCCCATCTATAACATTGTTG+AGG | 0.623582 | 6:-101336266 | None:intergenic |
TAAGAAGAGGCAAGGACCGA+AGG | 0.629324 | 6:+101336064 | MsaT033878.1:CDS |
TACTAGTACTATAACCTGGA+GGG | 0.630649 | 6:-101335929 | None:intergenic |
TCTTCCTTAACCAATTCACA+TGG | 0.638004 | 6:-101335993 | None:intergenic |
GGAATACTAGTACTATAACC+TGG | 0.638956 | 6:-101335933 | None:intergenic |
GGTTAAGGAAGAAATGCCAA+TGG | 0.642003 | 6:+101336004 | MsaT033878.1:CDS |
TGCATGGATTAGTAGTCAGA+GGG | 0.642777 | 6:+101335869 | MsaT033878.1:CDS |
TGAATGGAACTGGTAAGAAG+AGG | 0.650068 | 6:+101336051 | MsaT033878.1:CDS |
GGAACTGGTAAGAAGAGGCA+AGG | 0.651851 | 6:+101336056 | MsaT033878.1:CDS |
TTTCGACTTCCAATCAGAGG+CGG | 0.656585 | 6:-101335756 | None:intergenic |
CCTCAACAATGTTATAGATG+GGG | 0.670226 | 6:+101336266 | MsaT033878.1:CDS |
TAAGGAAGAAATGCCAATGG+AGG | 0.676077 | 6:+101336007 | MsaT033878.1:CDS |
CTTCGGTTCAACGAACACCA+AGG | 0.677515 | 6:+101336153 | MsaT033878.1:CDS |
GATTGGAAGTCGAAATGCCG+CGG | 0.697890 | 6:+101335764 | MsaT033878.1:CDS |
ATACTAGTACTATAACCTGG+AGG | 0.700408 | 6:-101335930 | None:intergenic |
GCAGTCTGCATGCTGCACAA+CGG | 0.723033 | 6:+101336301 | MsaT033878.1:CDS |
GCGGTGCTAGAATAGCCGGA+AGG | 0.737428 | 6:+101336363 | MsaT033878.1:CDS |
GTTAGTTCCCGACATAACCG+CGG | 0.737494 | 6:-101335781 | None:intergenic |
CCTATGAGTACTAAACGACG+CGG | 0.777544 | 6:+101336344 | MsaT033878.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr6 | gene | 101335648 | 101336517 | 101335648 | ID=MsaG033878 |
Chr6 | mRNA | 101335648 | 101336517 | 101335648 | ID=MsaT033878.1;Parent=MsaG033878 |
Chr6 | exon | 101335648 | 101336517 | 101335648 | ID=MsaT033878.1.exon1;Parent=MsaT033878.1 |
Chr6 | CDS | 101335648 | 101336517 | 101335648 | ID=cds.MsaT033878.1;Parent=MsaT033878.1 |
Gene Sequence |
Protein sequence |