AlfalfaGEDB | MsaG033878

M. sativa ssp. caerulea / MsaG033878

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF06217.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033878	XP_039682605.1	98.270	289	5	0	1	289	1	289	0.0	590

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033878	sp\|Q9SKD0\|BPC1_ARATH	51.163	301	117	10	1	289	1	283	1.08e-93	281

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033878	tr\|A0A396HIF8\|A0A396HIF8_MEDTR	98.270	289	5	0	1	289	1	289	0.0	590

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TFs/TRs:

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Gene ID	Type	Classification
MsaG033878	TF	BBR-BPC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000863	MsaG033878	0.819069	2.462243e-52	5.284226e-50
MsaG002435	MsaG033878	0.831768	2.500027e-55	7.614455e-53
MsaG002477	MsaG033878	0.827850	2.226472e-54	6.062998e-52
MsaG002826	MsaG033878	0.871408	1.428824e-66	1.757731e-63
MsaG002888	MsaG033878	0.855974	8.532742e-62	5.710180e-59
MsaG005330	MsaG033878	0.804818	3.039485e-49	4.588671e-47
MsaG005434	MsaG033878	0.883412	9.807691e-71	2.080087e-67
MsaG005847	MsaG033878	0.839545	2.742623e-57	1.055419e-54
MsaG006759	MsaG033878	0.842689	4.130218e-58	1.755914e-55
MsaG007048	MsaG033878	0.814253	2.923548e-51	5.546161e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033878	MtrunA17_Chr6g0479911	98.270	289	5	0	1	289	1	289	0.0	590
MsaG033878	MtrunA17_Chr8g0375531	52.577	291	120	10	4	289	3	280	2.88e-82	249
MsaG033878	MtrunA17_Chr1g0156031	55.263	114	51	0	176	289	227	340	1.30e-45	157
MsaG033878	MtrunA17_Chr8g0385961	32.806	253	163	4	40	289	64	312	1.38e-44	153

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033878	AT2G01930.2	51.163	301	117	10	1	289	1	283	1.09e-94	281
MsaG033878	AT2G01930.1	51.163	301	117	10	1	289	1	283	1.09e-94	281
MsaG033878	AT1G14685.1	50.847	295	123	8	1	289	1	279	3.67e-88	264
MsaG033878	AT1G14685.4	50.847	295	123	8	1	289	1	279	3.67e-88	264
MsaG033878	AT1G14685.3	50.847	295	123	8	1	289	1	279	3.67e-88	264
MsaG033878	AT1G14685.2	50.847	295	123	8	1	289	1	279	3.67e-88	264
MsaG033878	AT1G68120.1	46.780	295	120	10	4	289	3	269	7.89e-77	235
MsaG033878	AT2G35550.2	54.422	147	65	2	143	289	82	226	6.32e-50	165
MsaG033878	AT2G35550.4	54.422	147	65	2	143	289	82	226	6.32e-50	165
MsaG033878	AT2G35550.3	54.422	147	65	2	143	289	82	226	6.32e-50	165

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Find 97 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGCAAAGAAGCCGAAGAG+AGG	0.622231	6:+101336101	MsaT033878.1:CDS
AAGGGCACAAAAGAAAACTA+CGG	0.609634	6:+101336172	MsaT033878.1:CDS
AATGATTCGACCATGTGAAT+TGG	0.408906	6:+101335983	MsaT033878.1:CDS
ACAACTGATGCCATCGATGC+CGG	0.499881	6:+101335728	MsaT033878.1:CDS
ACAATGTTATAGATGGGGCT+CGG	0.487220	6:+101336271	MsaT033878.1:CDS
ACCACAGGTGCTTCCTCCAT+TGG	0.459398	6:-101336020	None:intergenic
ACCTCAACAATGTTATAGAT+GGG	0.523017	6:+101336265	MsaT033878.1:CDS
ACTACGGAAATTGCAATTAA+CGG	0.434305	6:+101336188	MsaT033878.1:CDS
AGGACTTATTGGGCAAAACA+TGG	0.561945	6:+101336467	MsaT033878.1:CDS
AGGTTATAGTACTAGTATTC+CGG	0.475931	6:+101335935	MsaT033878.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	101335648	101336517	101335648	ID=MsaG033878
Chr6	mRNA	101335648	101336517	101335648	ID=MsaT033878.1;Parent=MsaG033878
Chr6	exon	101335648	101336517	101335648	ID=MsaT033878.1.exon1;Parent=MsaT033878.1
Chr6	CDS	101335648	101336517	101335648	ID=cds.MsaT033878.1;Parent=MsaT033878.1

Gene Sequence

>MsaT033878.1

ATGGATGGAGATAATGGACTTAACATAAGCAATTGGGGATACTATGAACCTGTTTCATCTTTTAAGAATCATCTTGGTTTACAACTGATGCCATCGATGCCGGAAAAGCCGCCTCTGATTGGAAGTCGAAATGCCGCGGTTATGTCGGGAACTAACGGTGCATATCACCATCGGGAAATTGGGATGCCTCAAACTACTTACCCTTTGGATTATATGAGGGATGCATGGATTAGTAGTCAGAGGGATAATAAGTATATGAATATGAATATGATACCTACTAACCCTCCAGGTTATAGTACTAGTATTCCGGAGACATCTTCAGCTCATCATATTCAAATGATTCGACCATGTGAATTGGTTAAGGAAGAAATGCCAATGGAGGAAGCACCTGTGGTCGAGAAGGTGAATGGAACTGGTAAGAAGAGGCAAGGACCGAAGGTGCCGAAGTCTCCTAAGGCAAAGAAGCCGAAGAGAGGACCTCGTGTGCCGAAGGACGAGAATTCTCCTTCGGTTCAACGAACACCAAGGGCACAAAAGAAAACTACGGAAATTGCAATTAACGGGATTGATTTGGATATTTCAAGTATTCCGATTCCTGTTTGTTCTTGCACTGGGACACCTCAACAATGTTATAGATGGGGCTCGGGTGGATGGCAGTCTGCATGCTGCACAACGGCTATATCGATATATCCTTTGCCTATGAGTACTAAACGACGCGGTGCTAGAATAGCCGGAAGGAAAATGAGTATAGGAGCTTTTAAGAAAGTATTAGAGAAACTTGCAGCCGAGGGTTATAACTTTTCTAATCCGATAGATTTGAGGACTTATTGGGCAAAACATGGCACCAACAAGTTTGTTACTATCAGGTAG

Protein sequence

>MsaT033878.1

MDGDNGLNISNWGYYEPVSSFKNHLGLQLMPSMPEKPPLIGSRNAAVMSGTNGAYHHREIGMPQTTYPLDYMRDAWISSQRDNKYMNMNMIPTNPPGYSTSIPETSSAHHIQMIRPCELVKEEMPMEEAPVVEKVNGTGKKRQGPKVPKSPKAKKPKRGPRVPKDENSPSVQRTPRAQKKTTEIAINGIDLDISSIPIPVCSCTGTPQQCYRWGSGGWQSACCTTAISIYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIR*