AlfalfaGEDB | MsaG033878

M. sativa ssp. caerulea / MsaG033878

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF06217.15

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033878	XP_039682605.1	98.270	289	5	0	1	289	1	289	0.0	590

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033878	sp\|Q9SKD0\|BPC1_ARATH	51.163	301	117	10	1	289	1	283	1.08e-93	281

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033878	tr\|A0A396HIF8\|A0A396HIF8_MEDTR	98.270	289	5	0	1	289	1	289	0.0	590

TFs/TRs:

Gene ID	Type	Classification
MsaG033878	TF	BBR-BPC

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000863	MsaG033878	0.819069	2.462243e-52	5.284226e-50
MsaG002435	MsaG033878	0.831768	2.500027e-55	7.614455e-53
MsaG002477	MsaG033878	0.827850	2.226472e-54	6.062998e-52
MsaG002826	MsaG033878	0.871408	1.428824e-66	1.757731e-63
MsaG002888	MsaG033878	0.855974	8.532742e-62	5.710180e-59
MsaG005330	MsaG033878	0.804818	3.039485e-49	4.588671e-47
MsaG005434	MsaG033878	0.883412	9.807691e-71	2.080087e-67
MsaG005847	MsaG033878	0.839545	2.742623e-57	1.055419e-54
MsaG006759	MsaG033878	0.842689	4.130218e-58	1.755914e-55
MsaG007048	MsaG033878	0.814253	2.923548e-51	5.546161e-49
MsaG007372	MsaG033878	0.816881	7.647688e-52	1.550868e-49
MsaG007928	MsaG033878	0.801771	1.290645e-48	1.816295e-46
MsaG008470	MsaG033878	0.824677	1.256317e-53	3.132478e-51
MsaG008892	MsaG033878	0.899865	2.980422e-77	1.512693e-73
MsaG009484	MsaG033878	0.853850	3.503898e-61	2.172586e-58
MsaG009757	MsaG033878	0.827045	3.464091e-54	9.222655e-52
MsaG009922	MsaG033878	0.832324	1.824004e-55	5.645395e-53
MsaG010331	MsaG033878	0.814001	3.320774e-51	6.259987e-49
MsaG010332	MsaG033878	0.865051	1.561667e-64	1.478444e-61
MsaG010334	MsaG033878	0.860885	2.978256e-63	2.394946e-60
MsaG010573	MsaG033878	0.877112	1.702260e-68	2.690515e-65
MsaG011229	MsaG033878	0.834975	4.000471e-56	1.338991e-53
MsaG011413	MsaG033878	0.889432	5.341590e-73	1.528605e-69
MsaG012834	MsaG033878	0.804245	3.997706e-49	5.955604e-47
MsaG013093	MsaG033878	0.809296	3.463731e-50	5.815062e-48
MsaG013438	MsaG033878	0.801064	1.798319e-48	2.490444e-46
MsaG013453	MsaG033878	0.850041	4.176173e-60	2.266433e-57
MsaG013804	MsaG033878	0.801326	1.590714e-48	2.216114e-46
MsaG013851	MsaG033878	0.811662	1.074010e-50	1.910124e-48
MsaG013999	MsaG033878	0.808208	5.901812e-50	9.652564e-48
MsaG014000	MsaG033878	0.800862	1.976593e-48	2.724982e-46
MsaG014252	MsaG033878	0.809676	2.872305e-50	4.866867e-48
MsaG015363	MsaG033878	0.808340	5.533969e-50	9.079588e-48
MsaG015547	MsaG033878	0.804516	3.512457e-49	5.265541e-47
MsaG015621	MsaG033878	0.860824	3.107956e-63	2.493586e-60
MsaG015725	MsaG033878	0.802709	8.292744e-49	1.192285e-46
MsaG015733	MsaG033878	0.816664	8.548020e-52	1.723748e-49
MsaG015769	MsaG033878	0.822996	3.099833e-53	7.384259e-51
MsaG016112	MsaG033878	0.821226	7.936577e-53	1.803151e-50
MsaG016504	MsaG033878	0.830688	4.592680e-55	1.355520e-52
MsaG016714	MsaG033878	0.806478	1.367513e-49	2.146460e-47
MsaG016718	MsaG033878	0.820132	1.412242e-52	3.117037e-50
MsaG017789	MsaG033878	0.811433	1.203839e-50	2.129044e-48
MsaG018787	MsaG033878	0.803663	5.273393e-49	7.750804e-47
MsaG019455	MsaG033878	0.803580	5.485935e-49	8.047591e-47
MsaG020193	MsaG033878	0.853796	3.630506e-61	2.246878e-58
MsaG020221	MsaG033878	0.816434	9.620247e-52	1.928560e-49
MsaG021335	MsaG033878	0.801777	1.286951e-48	1.811353e-46
MsaG021799	MsaG033878	0.897520	2.951760e-76	1.309538e-72
MsaG022074	MsaG033878	0.819597	1.869369e-52	4.067555e-50
MsaG022388	MsaG033878	0.863700	4.105366e-64	3.683297e-61
MsaG024762	MsaG033878	0.834226	6.158948e-56	2.015741e-53
MsaG025770	MsaG033878	0.837460	9.412527e-57	3.395637e-54
MsaG028557	MsaG033878	0.882452	2.194483e-70	4.444022e-67
MsaG028740	MsaG033878	0.821240	7.877916e-53	1.790477e-50
MsaG030244	MsaG033878	0.807010	1.056943e-49	1.679844e-47
MsaG030382	MsaG033878	0.840183	1.873991e-57	7.357625e-55
MsaG030657	MsaG033878	0.872644	5.569784e-67	7.225452e-64
MsaG030768	MsaG033878	0.806315	1.480095e-49	2.314177e-47
MsaG030833	MsaG033878	0.847929	1.602113e-59	8.094264e-57
MsaG031347	MsaG033878	0.802272	1.019135e-48	1.450709e-46
MsaG031419	MsaG033878	0.822872	3.311660e-53	7.862646e-51
MsaG032531	MsaG033878	0.891867	5.948071e-74	1.934188e-70
MsaG032896	MsaG033878	0.807250	9.409371e-50	1.503930e-47
MsaG033732	MsaG033878	0.808434	5.283873e-50	8.689080e-48
MsaG033878	MsaG034933	0.917534	1.190911e-85	1.879239e-81
MsaG033878	MsaG036271	0.839696	2.506532e-57	9.692199e-55
MsaG033878	MsaG036689	0.829756	7.737390e-55	2.223619e-52
MsaG033878	MsaG037276	0.809149	3.723713e-50	6.229766e-48
MsaG033878	MsaG037332	0.893880	9.306726e-75	3.373226e-71
MsaG033878	MsaG037333	0.837557	8.889794e-57	3.216486e-54
MsaG033878	MsaG037736	0.813305	4.717617e-51	8.739025e-49
MsaG033878	MsaG038298	0.805029	2.747145e-49	4.167799e-47
MsaG033878	MsaG039182	0.832412	1.735872e-55	5.386242e-53
MsaG033878	MsaG039274	0.836172	1.998054e-56	6.932301e-54
MsaG033878	MsaG039394	0.813557	4.154311e-51	7.744853e-49
MsaG033878	MsaG040039	0.863928	3.491400e-64	3.160220e-61
MsaG033878	MsaG040742	0.851746	1.389262e-60	7.998038e-58
MsaG033878	MsaG040955	0.832694	1.478176e-55	4.624527e-53
MsaG033878	MsaG041114	0.835148	3.620087e-56	1.217954e-53
MsaG033878	MsaG041557	0.873708	2.456745e-67	3.338620e-64
MsaG033878	MsaG041550	0.860403	4.161772e-63	3.286600e-60
MsaG033878	MsaG041563	0.861271	2.274765e-63	1.856374e-60
MsaG033878	MsaG041623	0.834592	4.989956e-56	1.651211e-53
MsaG033878	MsaG041624	0.837907	7.236230e-57	2.646355e-54
MsaG033878	MsaG041862	0.826378	4.989500e-54	1.303962e-51
MsaG033878	MsaG042827	0.806212	1.555559e-49	2.426271e-47
MsaG033878	MsaG042841	0.809954	2.504466e-50	4.272202e-48
MsaG033878	MsaG044568	0.854044	3.082078e-61	1.924352e-58
MsaG033878	MsaG044703	0.909135	1.914576e-81	1.711072e-77
MsaG033878	MsaG045139	0.820161	1.390769e-52	3.072004e-50
MsaG033878	MsaG045121	0.806276	1.507737e-49	2.355281e-47
MsaG033878	MsaG045122	0.823324	2.601475e-53	6.252413e-51
MsaG033878	MsaG045152	0.837453	9.448127e-57	3.407775e-54
MsaG033878	MsaG045295	0.815486	1.562309e-51	3.057351e-49
MsaG033878	MsaG045314	0.800512	2.328368e-48	3.184683e-46
MsaG033878	MsaG045333	0.804545	3.463727e-49	5.196062e-47
MsaG033878	MsaG045348	0.869949	4.289585e-66	4.960692e-63
MsaG033878	MsaG046304	0.846095	5.065437e-59	2.406689e-56
MsaG033878	MsaG046347	0.817137	6.702218e-52	1.368196e-49
MsaG033878	MsaG046348	0.841791	7.121893e-58	2.941876e-55
MsaG033878	MsaG002656	0.825833	6.717491e-54	1.729140e-51
MsaG033878	MsaG000781	0.846698	3.474085e-59	1.684037e-56
MsaG033878	MsaG013963	0.837430	9.580248e-57	3.452893e-54
MsaG033878	MsaG020089	0.857590	2.868777e-62	2.037203e-59
MsaG033878	MsaG018616	0.931511	9.341033e-94	4.303971e-89
MsaG033878	MsaG018883	0.813862	3.561537e-51	6.690762e-49
MsaG033878	MsaG020276	0.834722	4.629139e-56	1.537824e-53
MsaG033878	MsaG026757	0.888768	9.633113e-73	2.662832e-69
MsaG033878	MsaG029709	0.872093	8.487303e-67	1.075207e-63
MsaG033878	MsaG027799	0.841830	6.957051e-58	2.877372e-55
MsaG033878	MsaG031442	0.811231	1.330729e-50	2.341851e-48
MsaG033878	MsaG033152	0.830541	4.988386e-55	1.466090e-52
MsaG033878	MsaG033431	0.809031	3.945457e-50	6.582018e-48
MsaG033878	MsaG045464	0.803385	6.017509e-49	8.787925e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033878	MtrunA17_Chr6g0479911	98.270	289	5	0	1	289	1	289	0.0	590
MsaG033878	MtrunA17_Chr8g0375531	52.577	291	120	10	4	289	3	280	2.88e-82	249
MsaG033878	MtrunA17_Chr1g0156031	55.263	114	51	0	176	289	227	340	1.30e-45	157
MsaG033878	MtrunA17_Chr8g0385961	32.806	253	163	4	40	289	64	312	1.38e-44	153

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033878	AT2G01930.2	51.163	301	117	10	1	289	1	283	1.09e-94	281
MsaG033878	AT2G01930.1	51.163	301	117	10	1	289	1	283	1.09e-94	281
MsaG033878	AT1G14685.1	50.847	295	123	8	1	289	1	279	3.67e-88	264
MsaG033878	AT1G14685.4	50.847	295	123	8	1	289	1	279	3.67e-88	264
MsaG033878	AT1G14685.3	50.847	295	123	8	1	289	1	279	3.67e-88	264
MsaG033878	AT1G14685.2	50.847	295	123	8	1	289	1	279	3.67e-88	264
MsaG033878	AT1G68120.1	46.780	295	120	10	4	289	3	269	7.89e-77	235
MsaG033878	AT2G35550.2	54.422	147	65	2	143	289	82	226	6.32e-50	165
MsaG033878	AT2G35550.4	54.422	147	65	2	143	289	82	226	6.32e-50	165
MsaG033878	AT2G35550.3	54.422	147	65	2	143	289	82	226	6.32e-50	165
MsaG033878	AT2G35550.1	54.422	147	65	2	143	289	127	271	8.75e-50	166
MsaG033878	AT2G21240.1	32.830	265	163	5	28	289	44	296	4.99e-44	152
MsaG033878	AT2G21240.2	32.830	265	163	5	28	289	44	296	4.99e-44	152
MsaG033878	AT5G42520.3	56.075	107	46	1	184	289	176	282	5.52e-42	146
MsaG033878	AT5G42520.2	56.075	107	46	1	184	289	232	338	8.08e-42	147
MsaG033878	AT5G42520.1	56.075	107	46	1	184	289	236	342	1.09e-41	147
MsaG033878	AT4G38910.1	43.478	138	77	1	152	289	122	258	1.24e-41	144
MsaG033878	AT4G38910.2	43.478	138	77	1	152	289	147	283	1.75e-41	145

Find 97 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCATATCACCATCGGGAAAT+TGG	0.178341	6:+101335807	MsaT033878.1:CDS
CGATAGATTTGAGGACTTAT+TGG	0.234611	6:+101336456	MsaT033878.1:CDS
TGCAATTAACGGGATTGATT+TGG	0.279573	6:+101336199	MsaT033878.1:CDS
GATAGATTTGAGGACTTATT+GGG	0.312732	6:+101336457	MsaT033878.1:CDS
CCAACAAGTTTGTTACTATC+AGG	0.343708	6:+101336492	MsaT033878.1:CDS
GCCTCAAACTACTTACCCTT+TGG	0.344791	6:+101335833	MsaT033878.1:CDS
ATTCCTGTTTGTTCTTGCAC+TGG	0.347046	6:+101336239	MsaT033878.1:CDS
CTTACCCTTTGGATTATATG+AGG	0.349085	6:+101335844	MsaT033878.1:CDS
CACCTCAACAATGTTATAGA+TGG	0.355446	6:+101336264	MsaT033878.1:CDS
ATGGACTTAACATAAGCAAT+TGG	0.360767	6:+101335661	MsaT033878.1:CDS
TTTCTAATCCGATAGATTTG+AGG	0.399273	6:+101336447	MsaT033878.1:CDS
AATGATTCGACCATGTGAAT+TGG	0.408906	6:+101335983	MsaT033878.1:CDS
CATATCACCATCGGGAAATT+GGG	0.409037	6:+101335808	MsaT033878.1:CDS
CCGGAAAAGCCGCCTCTGAT+TGG	0.413055	6:+101335747	MsaT033878.1:CDS
TGGACTTAACATAAGCAATT+GGG	0.420997	6:+101335662	MsaT033878.1:CDS
CTACGGAAATTGCAATTAAC+GGG	0.422090	6:+101336189	MsaT033878.1:CDS
TTAGGAGACTTCGGCACCTT+CGG	0.426454	6:-101336080	None:intergenic
TCGACCATGTGAATTGGTTA+AGG	0.427145	6:+101335989	MsaT033878.1:CDS
ACTACGGAAATTGCAATTAA+CGG	0.434305	6:+101336188	MsaT033878.1:CDS
CCTGATAGTAACAAACTTGT+TGG	0.444146	6:-101336492	None:intergenic
CTATAACCTGGAGGGTTAGT+AGG	0.446214	6:-101335921	None:intergenic
CGAAATGCCGCGGTTATGTC+GGG	0.452368	6:+101335774	MsaT033878.1:CDS
CTCTTCGGCTTCTTTGCCTT+AGG	0.455380	6:-101336098	None:intergenic
ACCACAGGTGCTTCCTCCAT+TGG	0.459398	6:-101336020	None:intergenic
TAATTTAGTGTTGTAATGGA+TGG	0.462352	6:+101335633	None:intergenic
ATAGATGGGGCTCGGGTGGA+TGG	0.464652	6:+101336279	MsaT033878.1:CDS
TTCCTGTTTGTTCTTGCACT+GGG	0.468493	6:+101336240	MsaT033878.1:CDS
TGATTCTTAAAAGATGAAAC+AGG	0.473276	6:-101335696	None:intergenic
AGGTTATAGTACTAGTATTC+CGG	0.475931	6:+101335935	MsaT033878.1:CDS
GTTGTAATGGATGGAGATAA+TGG	0.478647	6:+101335642	None:intergenic
ACAATGTTATAGATGGGGCT+CGG	0.487220	6:+101336271	MsaT033878.1:CDS
GGCACACGAGGTCCTCTCTT+CGG	0.493154	6:-101336113	None:intergenic
CCATTCACCTTCTCGACCAC+AGG	0.494618	6:-101336035	None:intergenic
ACAACTGATGCCATCGATGC+CGG	0.499881	6:+101335728	MsaT033878.1:CDS
TTCTTTGCCTTAGGAGACTT+CGG	0.501514	6:-101336089	None:intergenic
GTCCCAGTGCAAGAACAAAC+AGG	0.501675	6:-101336242	None:intergenic
TCGAAATGCCGCGGTTATGT+CGG	0.501909	6:+101335773	MsaT033878.1:CDS
GTGCAAGAACAAACAGGAAT+CGG	0.503075	6:-101336236	None:intergenic
GAAGGAGAATTCTCGTCCTT+CGG	0.503811	6:-101336134	None:intergenic
CAATGTTATAGATGGGGCTC+GGG	0.507375	6:+101336272	MsaT033878.1:CDS
CCTGTGGTCGAGAAGGTGAA+TGG	0.509475	6:+101336035	MsaT033878.1:CDS
ACCTCAACAATGTTATAGAT+GGG	0.523017	6:+101336265	MsaT033878.1:CDS
CCGCGTCGTTTAGTACTCAT+AGG	0.528654	6:-101336344	None:intergenic
CAATAAGTCCTCAAATCTAT+CGG	0.528692	6:-101336455	None:intergenic
GTCGAGAAGGTGAATGGAAC+TGG	0.530658	6:+101336041	MsaT033878.1:CDS
TCCAAAGGGTAAGTAGTTTG+AGG	0.531276	6:-101335834	None:intergenic
GAAGGACGAGAATTCTCCTT+CGG	0.531353	6:+101336136	MsaT033878.1:CDS
CTTGGTGTTCGTTGAACCGA+AGG	0.532361	6:-101336152	None:intergenic
TTACCCTTTGGATTATATGA+GGG	0.536203	6:+101335845	MsaT033878.1:CDS
CATCCCTCATATAATCCAAA+GGG	0.541845	6:-101335848	None:intergenic
TGTTATAGATGGGGCTCGGG+TGG	0.542239	6:+101336275	MsaT033878.1:CDS
TGGATTATATGAGGGATGCA+TGG	0.548813	6:+101335853	MsaT033878.1:CDS
TTCTCGTCCTTCGGCACACG+AGG	0.552572	6:-101336125	None:intergenic
TAACGGTGCATATCACCATC+GGG	0.558932	6:+101335800	MsaT033878.1:CDS
ATTAGAGAAACTTGCAGCCG+AGG	0.559521	6:+101336415	MsaT033878.1:CDS
ATTAGAAAAGTTATAACCCT+CGG	0.560267	6:-101336432	None:intergenic
AGGACTTATTGGGCAAAACA+TGG	0.561945	6:+101336467	MsaT033878.1:CDS
ATGATACCTACTAACCCTCC+AGG	0.562585	6:+101335915	MsaT033878.1:CDS
GAGAGGACCTCGTGTGCCGA+AGG	0.571472	6:+101336118	MsaT033878.1:CDS
GCCGGAAGGAAAATGAGTAT+AGG	0.573233	6:+101336377	MsaT033878.1:CDS
TTAGAGAAACTTGCAGCCGA+GGG	0.574547	6:+101336416	MsaT033878.1:CDS
CGACGCGGTGCTAGAATAGC+CGG	0.576753	6:+101336359	MsaT033878.1:CDS
TGATGAGCTGAAGATGTCTC+CGG	0.579222	6:-101335954	None:intergenic
GCGGTTATGTCGGGAACTAA+CGG	0.579757	6:+101335783	MsaT033878.1:CDS
GGAAGCACCTGTGGTCGAGA+AGG	0.588134	6:+101336028	MsaT033878.1:CDS
GAAGGTGCCGAAGTCTCCTA+AGG	0.590939	6:+101336082	MsaT033878.1:CDS
GCATCCCTCATATAATCCAA+AGG	0.600896	6:-101335849	None:intergenic
GGACTTAACATAAGCAATTG+GGG	0.601047	6:+101335663	MsaT033878.1:CDS
TTCGGTTCAACGAACACCAA+GGG	0.601561	6:+101336154	MsaT033878.1:CDS
GCATTTCGACTTCCAATCAG+AGG	0.603067	6:-101335759	None:intergenic
CAAGTTTGTTACTATCAGGT+AGG	0.604667	6:+101336496	MsaT033878.1:CDS
GCCAATGGAGGAAGCACCTG+TGG	0.607095	6:+101336019	MsaT033878.1:CDS
CTAACGGTGCATATCACCAT+CGG	0.608113	6:+101335799	MsaT033878.1:CDS
AAGGGCACAAAAGAAAACTA+CGG	0.609634	6:+101336172	MsaT033878.1:CDS
CGTTTAGTACTCATAGGCAA+AGG	0.610952	6:-101336338	None:intergenic
ATGCATGGATTAGTAGTCAG+AGG	0.611474	6:+101335868	MsaT033878.1:CDS
GAGGCATCCCAATTTCCCGA+TGG	0.615246	6:-101335815	None:intergenic
AAGGCAAAGAAGCCGAAGAG+AGG	0.622231	6:+101336101	MsaT033878.1:CDS
CCCCATCTATAACATTGTTG+AGG	0.623582	6:-101336266	None:intergenic
TAAGAAGAGGCAAGGACCGA+AGG	0.629324	6:+101336064	MsaT033878.1:CDS
TACTAGTACTATAACCTGGA+GGG	0.630649	6:-101335929	None:intergenic
TCTTCCTTAACCAATTCACA+TGG	0.638004	6:-101335993	None:intergenic
GGAATACTAGTACTATAACC+TGG	0.638956	6:-101335933	None:intergenic
GGTTAAGGAAGAAATGCCAA+TGG	0.642003	6:+101336004	MsaT033878.1:CDS
TGCATGGATTAGTAGTCAGA+GGG	0.642777	6:+101335869	MsaT033878.1:CDS
TGAATGGAACTGGTAAGAAG+AGG	0.650068	6:+101336051	MsaT033878.1:CDS
GGAACTGGTAAGAAGAGGCA+AGG	0.651851	6:+101336056	MsaT033878.1:CDS
TTTCGACTTCCAATCAGAGG+CGG	0.656585	6:-101335756	None:intergenic
CCTCAACAATGTTATAGATG+GGG	0.670226	6:+101336266	MsaT033878.1:CDS
TAAGGAAGAAATGCCAATGG+AGG	0.676077	6:+101336007	MsaT033878.1:CDS
CTTCGGTTCAACGAACACCA+AGG	0.677515	6:+101336153	MsaT033878.1:CDS
GATTGGAAGTCGAAATGCCG+CGG	0.697890	6:+101335764	MsaT033878.1:CDS
ATACTAGTACTATAACCTGG+AGG	0.700408	6:-101335930	None:intergenic
GCAGTCTGCATGCTGCACAA+CGG	0.723033	6:+101336301	MsaT033878.1:CDS
GCGGTGCTAGAATAGCCGGA+AGG	0.737428	6:+101336363	MsaT033878.1:CDS
GTTAGTTCCCGACATAACCG+CGG	0.737494	6:-101335781	None:intergenic
CCTATGAGTACTAAACGACG+CGG	0.777544	6:+101336344	MsaT033878.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	101335648	101336517	101335648	ID=MsaG033878
Chr6	mRNA	101335648	101336517	101335648	ID=MsaT033878.1;Parent=MsaG033878
Chr6	exon	101335648	101336517	101335648	ID=MsaT033878.1.exon1;Parent=MsaT033878.1
Chr6	CDS	101335648	101336517	101335648	ID=cds.MsaT033878.1;Parent=MsaT033878.1

Gene Sequence

>MsaT033878.1

ATGGATGGAGATAATGGACTTAACATAAGCAATTGGGGATACTATGAACCTGTTTCATCTTTTAAGAATCATCTTGGTTTACAACTGATGCCATCGATGCCGGAAAAGCCGCCTCTGATTGGAAGTCGAAATGCCGCGGTTATGTCGGGAACTAACGGTGCATATCACCATCGGGAAATTGGGATGCCTCAAACTACTTACCCTTTGGATTATATGAGGGATGCATGGATTAGTAGTCAGAGGGATAATAAGTATATGAATATGAATATGATACCTACTAACCCTCCAGGTTATAGTACTAGTATTCCGGAGACATCTTCAGCTCATCATATTCAAATGATTCGACCATGTGAATTGGTTAAGGAAGAAATGCCAATGGAGGAAGCACCTGTGGTCGAGAAGGTGAATGGAACTGGTAAGAAGAGGCAAGGACCGAAGGTGCCGAAGTCTCCTAAGGCAAAGAAGCCGAAGAGAGGACCTCGTGTGCCGAAGGACGAGAATTCTCCTTCGGTTCAACGAACACCAAGGGCACAAAAGAAAACTACGGAAATTGCAATTAACGGGATTGATTTGGATATTTCAAGTATTCCGATTCCTGTTTGTTCTTGCACTGGGACACCTCAACAATGTTATAGATGGGGCTCGGGTGGATGGCAGTCTGCATGCTGCACAACGGCTATATCGATATATCCTTTGCCTATGAGTACTAAACGACGCGGTGCTAGAATAGCCGGAAGGAAAATGAGTATAGGAGCTTTTAAGAAAGTATTAGAGAAACTTGCAGCCGAGGGTTATAACTTTTCTAATCCGATAGATTTGAGGACTTATTGGGCAAAACATGGCACCAACAAGTTTGTTACTATCAGGTAG

Protein sequence

>MsaT033878.1

MDGDNGLNISNWGYYEPVSSFKNHLGLQLMPSMPEKPPLIGSRNAAVMSGTNGAYHHREIGMPQTTYPLDYMRDAWISSQRDNKYMNMNMIPTNPPGYSTSIPETSSAHHIQMIRPCELVKEEMPMEEAPVVEKVNGTGKKRQGPKVPKSPKAKKPKRGPRVPKDENSPSVQRTPRAQKKTTEIAINGIDLDISSIPIPVCSCTGTPQQCYRWGSGGWQSACCTTAISIYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIR*