AlfalfaGEDB | MsaG033883

M. sativa ssp. caerulea / MsaG033883

KEGG: K20794
GO: GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031365 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0043998 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0051604 GO:0061733 GO:0071704 GO:0071840 GO:1901564 GO:1990189
PFAM: PF00583.28

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033883	XP_024642081.1	87.732	269	27	1	1	269	1	263	9.85e-173	487

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033883	sp\|Q568K5\|NAA40_DANRE	34.199	231	126	4	23	251	10	216	1.62e-28	112

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033883	tr\|A0A396HG85\|A0A396HG85_MEDTR	87.732	269	27	1	1	269	1	263	4.71e-173	487

TFs/TRs:

Gene ID	Type	Classification
MsaG033883	TR	GNAT

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033883	MtrunA17_Chr6g0479551	87.732	269	27	1	1	269	1	263	9.06e-177	487

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033883	AT1G18335.3	50.566	265	119	4	3	263	6	262	2.12e-77	236
MsaG033883	AT1G18335.2	50.566	265	119	4	3	263	6	262	2.12e-77	236
MsaG033883	AT1G18335.1	50.379	264	119	4	3	262	6	261	4.33e-77	235

Find 52 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTTGTATATATTGTTTAAT+AGG	0.217352	6:-101386939	None:intergenic
TGTACATTACCGATTTGTTT+TGG	0.337734	6:+101388007	MsaT033883.1:CDS
ACCATTGGATAAACTTTAGA+AGG	0.346375	6:-101389198	None:intergenic
ATTTCGAAGCAGCGATAAAC+GGG	0.378315	6:-101385540	None:intergenic
GATTTCGAAGCAGCGATAAA+CGG	0.401891	6:-101385541	None:intergenic
CGTGTCCAGGGGAAAGGATT+GGG	0.426522	6:+101388077	MsaT033883.1:CDS
CAAAGCAGCATATAGCATAA+AGG	0.436019	6:+101385500	MsaT033883.1:CDS
ACCAAGGGACCACTATCTTC+TGG	0.440378	6:-101387978	None:intergenic
ATATATACAAAGACTTCTTA+AGG	0.442688	6:+101386950	MsaT033883.1:CDS
ACAGCTCGAGCCTCGTGTCC+AGG	0.444598	6:+101388064	MsaT033883.1:CDS
TCCAGAAGATAGTGGTCCCT+TGG	0.454435	6:+101387977	MsaT033883.1:CDS
AAAGGTGAAGCGTATAGAAA+TGG	0.455948	6:+101387854	MsaT033883.1:CDS
CTTAACATGGAAGGGCCATA+TGG	0.467460	6:+101387810	MsaT033883.1:CDS
GCTTTCCCAATCCTTTCCCC+TGG	0.468580	6:-101388082	None:intergenic
CCTCTTCTTCCAAAACAAAT+CGG	0.471830	6:-101388016	None:intergenic
AGGATTGGGAAAGCTTCTAA+TGG	0.474839	6:+101388091	MsaT033883.1:CDS
ACAAATATATAGCATGCTTC+AGG	0.475325	6:-101387882	None:intergenic
GGCGTTGTTGTGAGTTGCAT+TGG	0.483691	6:-101385332	None:intergenic
CTCTCAGTGTGTTTAACGTC+AGG	0.484898	6:+101386894	MsaT033883.1:CDS
CAGCTCGAGCCTCGTGTCCA+GGG	0.491833	6:+101388065	MsaT033883.1:CDS
GAAGATAGTGGTCCCTTGGT+TGG	0.495248	6:+101387981	MsaT033883.1:CDS
TCTTGCCACTCAGATCCATA+TGG	0.513626	6:-101387825	None:intergenic
TATATATTGTTTAATAGGAG+AGG	0.517646	6:-101386934	None:intergenic
TCGTGTCCAGGGGAAAGGAT+TGG	0.525244	6:+101388076	MsaT033883.1:CDS
TGAGTGGCAAGAGGAAGAAA+AGG	0.525897	6:+101387836	MsaT033883.1:CDS
ATCTACAGCTTAACATGGAA+GGG	0.529467	6:+101387802	MsaT033883.1:intron
TCTTCTGGAAGACTAGTTGA+AGG	0.533222	6:-101387963	None:intergenic
GAGCCTCGTGTCCAGGGGAA+AGG	0.535185	6:+101388071	MsaT033883.1:CDS
ATGCTATATATTTGTGCATG+AGG	0.542195	6:+101387890	MsaT033883.1:CDS
AATCTACAGCTTAACATGGA+AGG	0.544882	6:+101387801	MsaT033883.1:intron
ACCTTCTAAAGTTTATCCAA+TGG	0.547249	6:+101389197	MsaT033883.1:CDS
TGTCGTGCTAACTATTCAAA+AGG	0.560643	6:+101388406	MsaT033883.1:CDS
TGTGAGTTGCATTGGTTCCA+CGG	0.567819	6:-101385324	None:intergenic
ACTAGTCTTCCAGAAGATAG+TGG	0.569548	6:+101387969	MsaT033883.1:CDS
TGTAAAACCAGCAATGAACT+CGG	0.592834	6:+101385285	None:intergenic
AATCCTTTCCCCTGGACACG+AGG	0.597062	6:-101388074	None:intergenic
CATTGGTTCCACGGTCACGT+TGG	0.600954	6:-101385315	None:intergenic
GTGTGTTTAACGTCAGGACA+TGG	0.610060	6:+101386900	MsaT033883.1:CDS
AGCTCGAGCCTCGTGTCCAG+GGG	0.623716	6:+101388066	MsaT033883.1:CDS
AGTTCATACACATAAAGTAC+CGG	0.630714	6:-101388041	None:intergenic
CAATCTAATGGTGCACCGAG+TGG	0.640629	6:-101389361	None:intergenic
GAGACGCTCCAACGTGACCG+TGG	0.649093	6:+101385307	MsaT033883.1:CDS
ATATGGATCTGAGTGGCAAG+AGG	0.653218	6:+101387827	MsaT033883.1:CDS
TCTAAATCTACAGCTTAACA+TGG	0.653637	6:+101387797	MsaT033883.1:intron
TAATGTACAAATCCAACCAA+GGG	0.659606	6:-101387993	None:intergenic
ACGCCGTCGTAACTGAGAGA+AGG	0.663934	6:+101385350	MsaT033883.1:CDS
GTAATGTACAAATCCAACCA+AGG	0.665929	6:-101387994	None:intergenic
GACGACAACAGTGTTGACTG+AGG	0.677893	6:+101387935	MsaT033883.1:CDS
TAACCTTCTCTCAGTTACGA+CGG	0.694983	6:-101385353	None:intergenic
ATAAACTTTAGAAGGTGACG+TGG	0.706293	6:-101389190	None:intergenic
GATAAACGGGAAAAGAAGCG+AGG	0.710792	6:-101385527	None:intergenic
AAGGGCCATATGGATCTGAG+TGG	0.737924	6:+101387820	MsaT033883.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	101385298	101389379	101385298	ID=MsaG033883
Chr6	mRNA	101385298	101389379	101385298	ID=MsaT033883.1;Parent=MsaG033883
Chr6	exon	101385298	101385387	101385298	ID=MsaT033883.1.exon1;Parent=MsaT033883.1
Chr6	CDS	101385298	101385387	101385298	ID=cds.MsaT033883.1;Parent=MsaT033883.1
Chr6	exon	101385465	101385567	101385465	ID=MsaT033883.1.exon2;Parent=MsaT033883.1
Chr6	CDS	101385465	101385567	101385465	ID=cds.MsaT033883.1;Parent=MsaT033883.1
Chr6	exon	101386892	101386971	101386892	ID=MsaT033883.1.exon3;Parent=MsaT033883.1
Chr6	CDS	101386892	101386971	101386892	ID=cds.MsaT033883.1;Parent=MsaT033883.1
Chr6	exon	101387810	101388139	101387810	ID=MsaT033883.1.exon4;Parent=MsaT033883.1
Chr6	CDS	101387810	101388139	101387810	ID=cds.MsaT033883.1;Parent=MsaT033883.1
Chr6	exon	101388392	101388468	101388392	ID=MsaT033883.1.exon5;Parent=MsaT033883.1
Chr6	CDS	101388392	101388468	101388392	ID=cds.MsaT033883.1;Parent=MsaT033883.1
Chr6	exon	101389176	101389218	101389176	ID=MsaT033883.1.exon6;Parent=MsaT033883.1
Chr6	CDS	101389176	101389218	101389176	ID=cds.MsaT033883.1;Parent=MsaT033883.1
Chr6	exon	101389293	101389379	101389293	ID=MsaT033883.1.exon7;Parent=MsaT033883.1
Chr6	CDS	101389293	101389379	101389293	ID=cds.MsaT033883.1;Parent=MsaT033883.1

Gene Sequence

>MsaT033883.1

ATGAACTCGGAGACGCTCCAACGTGACCGTGGAACCAATGCAACTCACAACAACGCCGTCGTAACTGAGAGAAGGTTAACACGCAGCGAACTTCTCGCAAAGAAGAACGCAAATGAACAACTCATCAAAGCAGCATATAGCATAAAGGATCACCTCGCTTCTTTTCCCGTTTATCGCTGCTTCGAAATCAACAGTCTCTCAGTGTGTTTAACGTCAGGACATGGCACTAAACTTTCCTCTCCTATTAAACAATATATACAAAGACTTCTTAAGCTTAACATGGAAGGGCCATATGGATCTGAGTGGCAAGAGGAAGAAAAGGTGAAGCGTATAGAAATGGTTGATCCTGAAGCATGCTATATATTTGTGCATGAGGTTACTAATGCAAATGCTGACGAGACGACAACAGTGTTGACTGAGGAAGATCCTTCAACTAGTCTTCCAGAAGATAGTGGTCCCTTGGTTGGATTTGTACATTACCGATTTGTTTTGGAAGAAGAGGTACCGGTACTTTATGTGTATGAACTACAGCTCGAGCCTCGTGTCCAGGGGAAAGGATTGGGAAAGCTTCTAATGGAACTTATTGAGCTTATCGCCCAAAATAACTGCATGGGTGCTGTCGTGCTAACTATTCAAAAGGCGAACATATCAGCTATGAATTTTTACACTAGTAAACTAAGATATATCATATCAGCCACGTCACCTTCTAAAGTTTATCCAATGATGGAGAAGAGTTATGAAATTCTTTGCAGAATATTTAATGATGAAGCTAAAACTATTTTTGAGGTAAACCACTCGGTGCACCATTAG

Protein sequence

>MsaT033883.1

MNSETLQRDRGTNATHNNAVVTERRLTRSELLAKKNANEQLIKAAYSIKDHLASFPVYRCFEINSLSVCLTSGHGTKLSSPIKQYIQRLLKLNMEGPYGSEWQEEEKVKRIEMVDPEACYIFVHEVTNANADETTTVLTEEDPSTSLPEDSGPLVGFVHYRFVLEEEVPVLYVYELQLEPRVQGKGLGKLLMELIELIAQNNCMGAVVLTIQKANISAMNFYTSKLRYIISATSPSKVYPMMEKSYEILCRIFNDEAKTIFEVNHSVHH*