AlfalfaGEDB | MsaG033883

M. sativa ssp. caerulea / MsaG033883

KEGG: K20794
GO: GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031365 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0043998 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0051604 GO:0061733 GO:0071704 GO:0071840 GO:1901564 GO:1990189
PFAM: PF00583.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033883	XP_024642081.1	87.732	269	27	1	1	269	1	263	9.85e-173	487

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033883	sp\|Q568K5\|NAA40_DANRE	34.199	231	126	4	23	251	10	216	1.62e-28	112

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033883	tr\|A0A396HG85\|A0A396HG85_MEDTR	87.732	269	27	1	1	269	1	263	4.71e-173	487

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TFs/TRs:

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Gene ID	Type	Classification
MsaG033883	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033883	MtrunA17_Chr6g0479551	87.732	269	27	1	1	269	1	263	9.06e-177	487

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG033883	AT1G18335.3	50.566	265	119	4	3	263	6	262	2.12e-77	236
MsaG033883	AT1G18335.2	50.566	265	119	4	3	263	6	262	2.12e-77	236
MsaG033883	AT1G18335.1	50.379	264	119	4	3	262	6	261	4.33e-77	235

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Find 52 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTGAAGCGTATAGAAA+TGG	0.455948	6:+101387854	MsaT033883.1:CDS
AAGGGCCATATGGATCTGAG+TGG	0.737924	6:+101387820	MsaT033883.1:CDS
AATCCTTTCCCCTGGACACG+AGG	0.597062	6:-101388074	None:intergenic
AATCTACAGCTTAACATGGA+AGG	0.544882	6:+101387801	MsaT033883.1:intron
ACAAATATATAGCATGCTTC+AGG	0.475325	6:-101387882	None:intergenic
ACAGCTCGAGCCTCGTGTCC+AGG	0.444598	6:+101388064	MsaT033883.1:CDS
ACCAAGGGACCACTATCTTC+TGG	0.440378	6:-101387978	None:intergenic
ACCATTGGATAAACTTTAGA+AGG	0.346375	6:-101389198	None:intergenic
ACCTTCTAAAGTTTATCCAA+TGG	0.547249	6:+101389197	MsaT033883.1:CDS
ACGCCGTCGTAACTGAGAGA+AGG	0.663934	6:+101385350	MsaT033883.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	101385298	101389379	101385298	ID=MsaG033883
Chr6	mRNA	101385298	101389379	101385298	ID=MsaT033883.1;Parent=MsaG033883
Chr6	exon	101385298	101385387	101385298	ID=MsaT033883.1.exon1;Parent=MsaT033883.1
Chr6	CDS	101385298	101385387	101385298	ID=cds.MsaT033883.1;Parent=MsaT033883.1
Chr6	exon	101385465	101385567	101385465	ID=MsaT033883.1.exon2;Parent=MsaT033883.1
Chr6	CDS	101385465	101385567	101385465	ID=cds.MsaT033883.1;Parent=MsaT033883.1
Chr6	exon	101386892	101386971	101386892	ID=MsaT033883.1.exon3;Parent=MsaT033883.1
Chr6	CDS	101386892	101386971	101386892	ID=cds.MsaT033883.1;Parent=MsaT033883.1
Chr6	exon	101387810	101388139	101387810	ID=MsaT033883.1.exon4;Parent=MsaT033883.1
Chr6	CDS	101387810	101388139	101387810	ID=cds.MsaT033883.1;Parent=MsaT033883.1
Chr6	exon	101388392	101388468	101388392	ID=MsaT033883.1.exon5;Parent=MsaT033883.1
Chr6	CDS	101388392	101388468	101388392	ID=cds.MsaT033883.1;Parent=MsaT033883.1
Chr6	exon	101389176	101389218	101389176	ID=MsaT033883.1.exon6;Parent=MsaT033883.1
Chr6	CDS	101389176	101389218	101389176	ID=cds.MsaT033883.1;Parent=MsaT033883.1
Chr6	exon	101389293	101389379	101389293	ID=MsaT033883.1.exon7;Parent=MsaT033883.1
Chr6	CDS	101389293	101389379	101389293	ID=cds.MsaT033883.1;Parent=MsaT033883.1

Gene Sequence

>MsaT033883.1

ATGAACTCGGAGACGCTCCAACGTGACCGTGGAACCAATGCAACTCACAACAACGCCGTCGTAACTGAGAGAAGGTTAACACGCAGCGAACTTCTCGCAAAGAAGAACGCAAATGAACAACTCATCAAAGCAGCATATAGCATAAAGGATCACCTCGCTTCTTTTCCCGTTTATCGCTGCTTCGAAATCAACAGTCTCTCAGTGTGTTTAACGTCAGGACATGGCACTAAACTTTCCTCTCCTATTAAACAATATATACAAAGACTTCTTAAGCTTAACATGGAAGGGCCATATGGATCTGAGTGGCAAGAGGAAGAAAAGGTGAAGCGTATAGAAATGGTTGATCCTGAAGCATGCTATATATTTGTGCATGAGGTTACTAATGCAAATGCTGACGAGACGACAACAGTGTTGACTGAGGAAGATCCTTCAACTAGTCTTCCAGAAGATAGTGGTCCCTTGGTTGGATTTGTACATTACCGATTTGTTTTGGAAGAAGAGGTACCGGTACTTTATGTGTATGAACTACAGCTCGAGCCTCGTGTCCAGGGGAAAGGATTGGGAAAGCTTCTAATGGAACTTATTGAGCTTATCGCCCAAAATAACTGCATGGGTGCTGTCGTGCTAACTATTCAAAAGGCGAACATATCAGCTATGAATTTTTACACTAGTAAACTAAGATATATCATATCAGCCACGTCACCTTCTAAAGTTTATCCAATGATGGAGAAGAGTTATGAAATTCTTTGCAGAATATTTAATGATGAAGCTAAAACTATTTTTGAGGTAAACCACTCGGTGCACCATTAG

Protein sequence

>MsaT033883.1

MNSETLQRDRGTNATHNNAVVTERRLTRSELLAKKNANEQLIKAAYSIKDHLASFPVYRCFEINSLSVCLTSGHGTKLSSPIKQYIQRLLKLNMEGPYGSEWQEEEKVKRIEMVDPEACYIFVHEVTNANADETTTVLTEEDPSTSLPEDSGPLVGFVHYRFVLEEEVPVLYVYELQLEPRVQGKGLGKLLMELIELIAQNNCMGAVVLTIQKANISAMNFYTSKLRYIISATSPSKVYPMMEKSYEILCRIFNDEAKTIFEVNHSVHH*