Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG033913 | XP_039682598.1 | 83.024 | 377 | 35 | 2 | 1 | 348 | 774 | 1150 | 0.0 | 600 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG033913 | sp|Q09690|POM1_SCHPO | 40.500 | 200 | 108 | 4 | 106 | 300 | 679 | 872 | 9.02e-36 | 141 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG033913 | tr|A0A396HGR0|A0A396HGR0_MEDTR | 83.024 | 377 | 35 | 2 | 1 | 348 | 774 | 1150 | 0.0 | 600 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG000744 | MsaG033913 | 0.874902 | 9.718130e-68 | 1.391677e-64 |
MsaG001397 | MsaG033913 | 0.853989 | 3.196217e-61 | 1.991783e-58 |
MsaG001934 | MsaG033913 | 0.829309 | 9.922056e-55 | 2.815159e-52 |
MsaG002269 | MsaG033913 | 0.808787 | 4.447130e-50 | 7.375486e-48 |
MsaG003403 | MsaG033913 | 0.828260 | 1.775733e-54 | 4.891381e-52 |
MsaG007821 | MsaG033913 | 0.832117 | 2.051495e-55 | 6.312032e-53 |
MsaG010484 | MsaG033913 | 0.857753 | 2.566892e-62 | 1.834045e-59 |
MsaG011006 | MsaG033913 | 0.828289 | 1.746951e-54 | 4.816081e-52 |
MsaG011194 | MsaG033913 | 0.814525 | 2.546239e-51 | 4.863516e-49 |
MsaG014248 | MsaG033913 | 0.845166 | 9.023272e-59 | 4.156988e-56 |
MsaG015591 | MsaG033913 | 0.870840 | 2.195415e-66 | 2.636171e-63 |
MsaG018344 | MsaG033913 | 0.889484 | 5.098405e-73 | 1.462935e-69 |
MsaG018345 | MsaG033913 | 0.825368 | 8.644567e-54 | 2.196708e-51 |
MsaG018459 | MsaG033913 | 0.827715 | 2.397583e-54 | 6.504362e-52 |
MsaG019897 | MsaG033913 | 0.809303 | 3.452396e-50 | 5.797006e-48 |
MsaG020225 | MsaG033913 | 0.806899 | 1.115553e-49 | 1.768334e-47 |
MsaG021342 | MsaG033913 | 0.849710 | 5.161157e-60 | 2.769871e-57 |
MsaG021976 | MsaG033913 | 0.803779 | 4.989531e-49 | 7.353266e-47 |
MsaG023256 | MsaG033913 | 0.830019 | 6.679471e-55 | 1.934202e-52 |
MsaG028201 | MsaG033913 | 0.811232 | 1.330618e-50 | 2.341677e-48 |
MsaG028395 | MsaG033913 | 0.862420 | 1.016607e-63 | 8.673173e-61 |
MsaG030761 | MsaG033913 | 0.804190 | 4.103958e-49 | 6.106079e-47 |
MsaG031679 | MsaG033913 | 0.828691 | 1.398813e-54 | 3.900070e-52 |
MsaG033913 | MsaG033925 | 0.874634 | 1.198406e-67 | 1.696144e-64 |
MsaG033913 | MsaG035638 | 0.805150 | 2.592872e-49 | 3.944694e-47 |
MsaG033913 | MsaG035645 | 0.837041 | 1.203245e-56 | 4.285412e-54 |
MsaG033913 | MsaG036560 | 0.809650 | 2.910289e-50 | 4.928114e-48 |
MsaG033913 | MsaG037742 | 0.811756 | 1.024594e-50 | 1.826465e-48 |
MsaG033913 | MsaG038768 | 0.838266 | 5.854875e-57 | 2.165022e-54 |
MsaG033913 | MsaG039958 | 0.824401 | 1.458474e-53 | 3.609265e-51 |
MsaG033913 | MsaG040352 | 0.844741 | 1.173834e-58 | 5.333045e-56 |
MsaG033913 | MsaG041483 | 0.837237 | 1.072773e-56 | 3.843475e-54 |
MsaG033913 | MsaG045866 | 0.832621 | 1.540723e-55 | 4.810038e-53 |
MsaG033913 | MsaG046424 | 0.831389 | 3.095526e-55 | 9.323355e-53 |
MsaG033913 | MsaG046580 | 0.866882 | 4.140679e-65 | 4.220890e-62 |
MsaG033913 | MsaG046781 | 0.833308 | 1.042117e-55 | 3.319566e-53 |
MsaG033913 | MsaG002388 | 0.852127 | 1.083982e-60 | 6.325380e-58 |
MsaG033913 | MsaG001839 | 0.848651 | 1.014242e-59 | 5.250036e-57 |
MsaG033913 | MsaG002751 | 0.814130 | 3.110753e-51 | 5.883087e-49 |
MsaG033913 | MsaG006966 | 0.812535 | 6.942357e-51 | 1.261642e-48 |
MsaG033913 | MsaG012223 | 0.825386 | 8.563065e-54 | 2.176964e-51 |
MsaG033913 | MsaG027700 | 0.807971 | 6.624826e-50 | 1.077355e-47 |
MsaG033913 | MsaG024919 | 0.814261 | 2.911140e-51 | 5.523836e-49 |
MsaG033913 | MsaG031792 | 0.801580 | 1.411698e-48 | 1.978043e-46 |
MsaG033913 | MsaG045530 | 0.809053 | 3.903377e-50 | 6.515383e-48 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG033913 | MtrunA17_Chr6g0480541 | 83.024 | 377 | 35 | 2 | 1 | 348 | 774 | 1150 | 0.0 | 600 |
MsaG033913 | MtrunA17_Chr5g0437131 | 63.043 | 276 | 67 | 3 | 105 | 348 | 383 | 655 | 1.17e-116 | 353 |
MsaG033913 | MtrunA17_Chr6g0480481 | 78.061 | 196 | 9 | 2 | 105 | 300 | 14 | 175 | 1.58e-101 | 298 |
MsaG033913 | MtrunA17_Chr6g0480491 | 96.250 | 80 | 3 | 0 | 1 | 80 | 83 | 162 | 7.82e-47 | 157 |
MsaG033913 | MtrunA17_Chr8g0369241 | 37.805 | 246 | 110 | 8 | 125 | 334 | 139 | 377 | 6.94e-35 | 135 |
MsaG033913 | MtrunA17_Chr6g0480471 | 96.078 | 51 | 2 | 0 | 298 | 348 | 25 | 75 | 3.09e-28 | 105 |
MsaG033913 | MtrunA17_Chr1g0210061 | 33.659 | 205 | 119 | 8 | 117 | 310 | 602 | 800 | 3.85e-24 | 103 |
MsaG033913 | MtrunA17_Chr3g0139371 | 28.179 | 291 | 149 | 9 | 104 | 340 | 51 | 335 | 1.16e-22 | 97.8 |
MsaG033913 | MtrunA17_Chr3g0116701 | 29.333 | 225 | 125 | 7 | 104 | 300 | 71 | 289 | 2.26e-19 | 88.6 |
MsaG033913 | MtrunA17_Chr4g0058241 | 28.889 | 225 | 126 | 7 | 104 | 300 | 75 | 293 | 7.44e-19 | 87.0 |
MsaG033913 | MtrunA17_Chr3g0123491 | 26.335 | 281 | 144 | 8 | 104 | 327 | 70 | 344 | 5.87e-18 | 84.3 |
MsaG033913 | MtrunA17_Chr5g0443351 | 31.606 | 193 | 102 | 7 | 122 | 298 | 19 | 197 | 1.23e-14 | 74.7 |
MsaG033913 | MtrunA17_Chr2g0287271 | 30.622 | 209 | 102 | 9 | 122 | 306 | 22 | 211 | 2.84e-14 | 73.9 |
MsaG033913 | MtrunA17_Chr1g0197721 | 29.902 | 204 | 107 | 8 | 125 | 308 | 51 | 238 | 1.66e-13 | 71.2 |
MsaG033913 | MtrunA17_Chr4g0027671 | 34.868 | 152 | 84 | 5 | 123 | 265 | 37 | 182 | 2.19e-13 | 71.2 |
MsaG033913 | MtrunA17_Chr4g0045841 | 29.670 | 182 | 106 | 6 | 131 | 302 | 61 | 230 | 5.54e-13 | 69.3 |
MsaG033913 | MtrunA17_Chr6g0482681 | 30.622 | 209 | 102 | 9 | 122 | 306 | 86 | 275 | 8.58e-13 | 69.3 |
MsaG033913 | MtrunA17_Chr1g0179611 | 32.335 | 167 | 92 | 6 | 112 | 265 | 29 | 187 | 2.62e-12 | 67.8 |
MsaG033913 | MtrunA17_Chr2g0320631 | 33.553 | 152 | 86 | 4 | 123 | 265 | 38 | 183 | 2.64e-12 | 67.8 |
MsaG033913 | MtrunA17_Chr5g0407121 | 31.210 | 157 | 97 | 3 | 116 | 265 | 29 | 181 | 5.16e-12 | 66.6 |
MsaG033913 | MtrunA17_Chr8g0348481 | 29.665 | 209 | 128 | 8 | 131 | 329 | 43 | 242 | 6.26e-12 | 66.2 |
MsaG033913 | MtrunA17_Chr4g0030151 | 29.508 | 183 | 101 | 7 | 131 | 300 | 45 | 212 | 6.38e-12 | 66.2 |
MsaG033913 | MtrunA17_Chr5g0397261 | 30.508 | 177 | 107 | 6 | 131 | 300 | 47 | 214 | 1.13e-11 | 65.5 |
MsaG033913 | MtrunA17_Chr7g0270371 | 27.624 | 181 | 119 | 5 | 125 | 300 | 75 | 248 | 2.14e-11 | 64.7 |
MsaG033913 | MtrunA17_Chr1g0193081 | 28.177 | 181 | 118 | 5 | 125 | 300 | 75 | 248 | 5.61e-11 | 63.5 |
MsaG033913 | MtrunA17_Chr7g0248461 | 28.333 | 180 | 107 | 6 | 131 | 300 | 44 | 211 | 7.56e-11 | 62.8 |
MsaG033913 | MtrunA17_Chr4g0030231 | 31.383 | 188 | 91 | 9 | 131 | 300 | 46 | 213 | 8.41e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG033913 | AT1G73450.1 | 65.714 | 385 | 83 | 5 | 1 | 348 | 721 | 1093 | 4.58e-156 | 468 |
MsaG033913 | AT1G73460.2 | 65.285 | 386 | 86 | 6 | 1 | 348 | 735 | 1110 | 1.22e-152 | 459 |
MsaG033913 | AT1G73460.1 | 65.285 | 386 | 86 | 6 | 1 | 348 | 735 | 1110 | 1.22e-152 | 459 |
MsaG033913 | AT3G17750.1 | 65.517 | 377 | 99 | 3 | 1 | 348 | 705 | 1079 | 1.52e-150 | 453 |
MsaG033913 | AT2G40120.1 | 52.809 | 356 | 121 | 6 | 28 | 348 | 170 | 513 | 1.24e-117 | 352 |
MsaG033913 | AT5G35980.1 | 41.989 | 181 | 95 | 5 | 125 | 300 | 122 | 297 | 4.46e-33 | 130 |
MsaG033913 | AT5G35980.2 | 41.989 | 181 | 95 | 5 | 125 | 300 | 122 | 297 | 5.15e-33 | 130 |
MsaG033913 | AT5G35980.3 | 41.989 | 181 | 95 | 5 | 125 | 300 | 87 | 262 | 5.94e-33 | 130 |
MsaG033913 | AT4G24740.1 | 27.397 | 292 | 150 | 9 | 104 | 339 | 75 | 360 | 2.39e-21 | 94.7 |
MsaG033913 | AT4G24740.7 | 27.397 | 292 | 150 | 9 | 104 | 339 | 37 | 322 | 2.56e-21 | 94.4 |
MsaG033913 | AT4G24740.3 | 27.698 | 278 | 140 | 8 | 104 | 326 | 75 | 346 | 5.37e-21 | 92.8 |
MsaG033913 | AT4G32660.2 | 27.027 | 296 | 153 | 9 | 101 | 340 | 45 | 333 | 1.21e-20 | 92.0 |
MsaG033913 | AT4G32660.1 | 27.027 | 296 | 153 | 9 | 101 | 340 | 45 | 333 | 1.36e-20 | 92.4 |
MsaG033913 | AT4G32660.3 | 26.962 | 293 | 151 | 9 | 101 | 337 | 37 | 322 | 1.59e-20 | 92.0 |
MsaG033913 | AT4G24740.4 | 29.333 | 225 | 125 | 7 | 104 | 300 | 75 | 293 | 1.83e-20 | 90.9 |
MsaG033913 | AT1G13350.1 | 32.292 | 192 | 117 | 6 | 117 | 300 | 434 | 620 | 4.19e-20 | 92.0 |
MsaG033913 | AT1G13350.2 | 32.292 | 192 | 117 | 6 | 117 | 300 | 461 | 647 | 4.85e-20 | 92.0 |
MsaG033913 | AT1G13350.3 | 29.630 | 189 | 126 | 4 | 117 | 300 | 507 | 693 | 6.74e-20 | 91.7 |
MsaG033913 | AT3G25840.1 | 31.606 | 193 | 117 | 7 | 117 | 300 | 609 | 795 | 8.41e-20 | 91.3 |
MsaG033913 | AT3G25840.2 | 31.606 | 193 | 117 | 7 | 117 | 300 | 347 | 533 | 1.10e-19 | 90.9 |
MsaG033913 | AT4G24740.6 | 27.757 | 263 | 130 | 8 | 131 | 339 | 1 | 257 | 4.28e-19 | 87.0 |
MsaG033913 | AT4G24740.9 | 27.757 | 263 | 130 | 8 | 131 | 339 | 1 | 257 | 4.28e-19 | 87.0 |
MsaG033913 | AT4G24740.2 | 27.757 | 263 | 130 | 8 | 131 | 339 | 1 | 257 | 4.28e-19 | 87.0 |
MsaG033913 | AT3G53570.1 | 26.780 | 295 | 152 | 9 | 104 | 340 | 92 | 380 | 8.18e-19 | 87.8 |
MsaG033913 | AT3G53570.4 | 26.780 | 295 | 152 | 9 | 104 | 340 | 92 | 380 | 8.18e-19 | 87.8 |
MsaG033913 | AT3G53570.2 | 26.780 | 295 | 152 | 9 | 104 | 340 | 92 | 380 | 8.18e-19 | 87.8 |
MsaG033913 | AT4G24740.5 | 28.112 | 249 | 120 | 7 | 131 | 326 | 1 | 243 | 9.80e-19 | 84.7 |
MsaG033913 | AT3G53570.3 | 26.780 | 295 | 152 | 9 | 104 | 340 | 78 | 366 | 1.25e-18 | 87.0 |
MsaG033913 | AT3G53570.5 | 26.780 | 295 | 152 | 9 | 104 | 340 | 78 | 366 | 1.25e-18 | 87.0 |
MsaG033913 | AT3G53640.1 | 25.475 | 263 | 162 | 5 | 117 | 347 | 315 | 575 | 2.25e-18 | 86.7 |
MsaG033913 | AT5G19010.1 | 30.622 | 209 | 102 | 9 | 122 | 306 | 22 | 211 | 3.66e-14 | 73.9 |
MsaG033913 | AT2G17530.2 | 36.424 | 151 | 85 | 4 | 122 | 265 | 35 | 181 | 6.91e-14 | 72.4 |
MsaG033913 | AT2G17530.1 | 36.424 | 151 | 85 | 4 | 122 | 265 | 35 | 181 | 1.18e-13 | 72.0 |
MsaG033913 | AT2G17530.3 | 36.424 | 151 | 85 | 4 | 122 | 265 | 35 | 181 | 1.18e-13 | 72.0 |
MsaG033913 | AT3G14720.1 | 30.244 | 205 | 89 | 8 | 122 | 298 | 22 | 200 | 2.78e-13 | 71.2 |
MsaG033913 | AT2G01450.3 | 30.542 | 203 | 110 | 8 | 122 | 306 | 13 | 202 | 1.01e-12 | 69.3 |
MsaG033913 | AT2G01450.1 | 30.542 | 203 | 110 | 8 | 122 | 306 | 13 | 202 | 1.01e-12 | 69.3 |
MsaG033913 | AT2G01450.2 | 30.542 | 203 | 110 | 8 | 122 | 306 | 13 | 202 | 1.01e-12 | 69.3 |
MsaG033913 | AT2G01450.4 | 30.542 | 203 | 110 | 8 | 122 | 306 | 13 | 202 | 1.01e-12 | 69.3 |
MsaG033913 | AT3G14720.2 | 30.244 | 205 | 89 | 8 | 122 | 298 | 22 | 200 | 1.02e-12 | 69.3 |
MsaG033913 | AT3G14720.3 | 30.244 | 205 | 89 | 8 | 122 | 298 | 22 | 200 | 1.02e-12 | 69.3 |
MsaG033913 | AT3G44850.1 | 31.579 | 152 | 89 | 4 | 123 | 265 | 43 | 188 | 1.44e-12 | 68.9 |
MsaG033913 | AT2G43790.1 | 30.168 | 179 | 109 | 6 | 131 | 302 | 69 | 238 | 3.87e-12 | 67.4 |
MsaG033913 | AT3G53030.1 | 29.697 | 165 | 99 | 5 | 112 | 265 | 27 | 185 | 5.71e-12 | 67.0 |
MsaG033913 | AT4G11330.1 | 27.957 | 186 | 104 | 6 | 131 | 302 | 49 | 218 | 6.23e-12 | 66.6 |
MsaG033913 | AT5G22840.1 | 32.051 | 156 | 91 | 4 | 123 | 269 | 43 | 192 | 7.99e-12 | 66.6 |
MsaG033913 | AT4G32660.4 | 27.803 | 223 | 100 | 8 | 169 | 337 | 3 | 218 | 1.03e-11 | 65.1 |
MsaG033913 | AT5G04510.1 | 30.198 | 202 | 95 | 10 | 132 | 308 | 51 | 231 | 1.25e-11 | 65.9 |
MsaG033913 | AT5G04510.2 | 29.592 | 196 | 104 | 8 | 132 | 308 | 51 | 231 | 1.44e-11 | 65.5 |
MsaG033913 | AT3G45640.1 | 30.000 | 200 | 111 | 8 | 131 | 316 | 44 | 228 | 1.60e-11 | 65.5 |
MsaG033913 | AT4G01370.1 | 29.524 | 210 | 127 | 8 | 131 | 329 | 49 | 248 | 1.73e-11 | 65.1 |
MsaG033913 | AT5G04510.3 | 29.592 | 196 | 104 | 8 | 132 | 308 | 51 | 231 | 2.55e-11 | 64.3 |
MsaG033913 | AT3G61160.6 | 27.624 | 181 | 119 | 5 | 125 | 300 | 109 | 282 | 4.53e-11 | 63.9 |
MsaG033913 | AT3G61160.3 | 27.624 | 181 | 119 | 5 | 125 | 300 | 102 | 275 | 5.28e-11 | 63.5 |
MsaG033913 | AT3G61160.5 | 27.624 | 181 | 119 | 5 | 125 | 300 | 102 | 275 | 5.65e-11 | 63.5 |
MsaG033913 | AT1G01560.4 | 30.047 | 213 | 122 | 9 | 131 | 329 | 46 | 245 | 7.31e-11 | 62.4 |
MsaG033913 | AT1G01560.1 | 30.047 | 213 | 122 | 9 | 131 | 329 | 46 | 245 | 7.31e-11 | 62.4 |
MsaG033913 | AT3G61160.2 | 27.624 | 181 | 119 | 5 | 125 | 300 | 109 | 282 | 7.41e-11 | 63.5 |
MsaG033913 | AT3G61160.1 | 27.624 | 181 | 119 | 5 | 125 | 300 | 102 | 275 | 8.50e-11 | 63.2 |
MsaG033913 | AT3G61160.4 | 27.624 | 181 | 119 | 5 | 125 | 300 | 102 | 275 | 9.96e-11 | 63.2 |
Find 69 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTATCATGTCACCGAGTATC+TGG | 0.223286 | 6:-102226884 | MsaT033913.1:CDS |
CTTGAAGCCGGAGAATATTT+TGG | 0.237591 | 6:-102225087 | MsaT033913.1:CDS |
CATAAATTTAACAGAGAATC+AGG | 0.249259 | 6:-102225973 | MsaT033913.1:CDS |
GTCAATTACCATTCAATGTT+TGG | 0.292705 | 6:-102225153 | MsaT033913.1:CDS |
CTTCACCCGAGAAAAGTTCT+AGG | 0.316441 | 6:-102227866 | MsaT033913.1:CDS |
ACATTACTTGCTAGGGTAAT+CGG | 0.321223 | 6:-102223978 | MsaT033913.1:CDS |
ATTGCAAAGGATGATGATTT+AGG | 0.349917 | 6:-102227726 | MsaT033913.1:CDS |
CCAACTACTGTAGATAATTA+CGG | 0.350202 | 6:-102227801 | MsaT033913.1:CDS |
ACAGCGCATTGGGTTAATAA+TGG | 0.352807 | 6:-102227385 | MsaT033913.1:intron |
CTTCACAATGCCAAGATTGC+AGG | 0.358829 | 6:-102225938 | MsaT033913.1:intron |
GCTAGCATACTTTGACCAAT+TGG | 0.379617 | 6:+102223945 | None:intergenic |
ACTCTACAAACCTGCAATCT+TGG | 0.406214 | 6:+102225928 | None:intergenic |
TCGGTTCATAACAGCGCATT+GGG | 0.422215 | 6:-102227395 | MsaT033913.1:intron |
GTGCAGGTCATGAGCTTGTA+TGG | 0.428039 | 6:+102226840 | None:intergenic |
ACCCTAGCAAGTAATGTTGC+CGG | 0.432217 | 6:+102223984 | None:intergenic |
CAACTACTGTAGATAATTAC+GGG | 0.435480 | 6:-102227800 | MsaT033913.1:CDS |
TTTATGAAACTCGTATAAGT+TGG | 0.437394 | 6:+102225990 | None:intergenic |
CTTCAGTATTTACATAACCT+TGG | 0.444556 | 6:-102225125 | MsaT033913.1:CDS |
CATTACTTGCTAGGGTAATC+GGG | 0.445037 | 6:-102223977 | MsaT033913.1:CDS |
ATCGGGATCATCGGTCCAAT+TGG | 0.470869 | 6:-102223960 | MsaT033913.1:CDS |
GTTGTTCAGAACTGGGTTTG+AGG | 0.474487 | 6:-102226953 | MsaT033913.1:intron |
CCCTAGCAAGTAATGTTGCC+GGG | 0.476537 | 6:+102223985 | None:intergenic |
ATCGGTTCATAACAGCGCAT+TGG | 0.477314 | 6:-102227396 | MsaT033913.1:intron |
TATGCTTTATGAGAGGAATC+AGG | 0.494533 | 6:-102223883 | MsaT033913.1:intron |
CCCGGCAACATTACTTGCTA+GGG | 0.494802 | 6:-102223985 | MsaT033913.1:CDS |
CCCCGGCAACATTACTTGCT+AGG | 0.495623 | 6:-102223986 | MsaT033913.1:CDS |
GGTCAAAGTATGCTAGCAAA+AGG | 0.496032 | 6:-102223939 | MsaT033913.1:CDS |
AAGTGCTTCCAAACATTGAA+TGG | 0.497818 | 6:+102225145 | None:intergenic |
CTGATGAAATGCTTTCTTCG+TGG | 0.513180 | 6:-102227908 | None:intergenic |
GATTGCTGCTGTGCAAGAGC+AGG | 0.514712 | 6:-102227682 | MsaT033913.1:intron |
TGAGAAGTTTGATTTCATCA+AGG | 0.517055 | 6:+102226758 | None:intergenic |
CTTATTTCAAAATGATTCCC+CGG | 0.520946 | 6:-102224003 | MsaT033913.1:CDS |
GAGGTGAAGGTCATTGATCT+TGG | 0.522315 | 6:-102225044 | MsaT033913.1:CDS |
TTTGCTCATATGTTCAGTCC+AGG | 0.529127 | 6:-102224995 | MsaT033913.1:CDS |
GATACTCGGTGACATGATAG+TGG | 0.533103 | 6:+102226887 | None:intergenic |
CCGTAATTATCTACAGTAGT+TGG | 0.536230 | 6:+102227801 | None:intergenic |
CTCAGGAGCACGATAGGACC+TGG | 0.537644 | 6:+102224977 | None:intergenic |
TATGTCAATAAGCATGATCC+TGG | 0.545673 | 6:-102226733 | MsaT033913.1:CDS |
AAAATAAGATGAAACTAAGA+TGG | 0.546372 | 6:-102227362 | MsaT033913.1:CDS |
TTCACCCGAGAAAAGTTCTA+GGG | 0.553463 | 6:-102227865 | MsaT033913.1:CDS |
TATCATGTCACCGAGTATCT+GGG | 0.561541 | 6:-102226883 | MsaT033913.1:CDS |
AAACATCCACACCTGTGTGC+AGG | 0.562424 | 6:+102226824 | None:intergenic |
AATACATTGCGACTTGAAGC+CGG | 0.562519 | 6:-102225099 | MsaT033913.1:CDS |
AGTCGCAATGTATTAGTCCA+AGG | 0.567368 | 6:+102225108 | None:intergenic |
ATTAACCTCAGGAGCACGAT+AGG | 0.571694 | 6:+102224971 | None:intergenic |
TGCAGCAGATCCCAGATACT+CGG | 0.574398 | 6:+102226873 | None:intergenic |
AAAATGTGATACTTGTCGCC+AGG | 0.577417 | 6:+102226715 | None:intergenic |
GCTAGGGTAATCGGGATCAT+CGG | 0.577471 | 6:-102223969 | MsaT033913.1:CDS |
TGATTTAGGTGTTTCACAAG+AGG | 0.578381 | 6:-102227712 | MsaT033913.1:CDS |
AAGTATGCTAGCAAAAGGAC+GGG | 0.589744 | 6:-102223934 | MsaT033913.1:CDS |
AAAGTATGCTAGCAAAAGGA+CGG | 0.592834 | 6:-102223935 | MsaT033913.1:CDS |
GTTCAGAACTGGGTTTGAGG+AGG | 0.612984 | 6:-102226950 | MsaT033913.1:intron |
CTACATCCGATGTGAGGTGA+AGG | 0.619012 | 6:-102225057 | MsaT033913.1:CDS |
AAAATCATATGCTTTATGAG+AGG | 0.623112 | 6:-102223890 | MsaT033913.1:CDS |
CAGGTCCTATCGTGCTCCTG+AGG | 0.625226 | 6:-102224976 | MsaT033913.1:intron |
ATGAAATGCTTTCTTCGTGG+AGG | 0.631843 | 6:-102227905 | None:intergenic |
AATTTAACAGAGAATCAGGA+GGG | 0.648186 | 6:-102225969 | MsaT033913.1:CDS |
GGATGAGAATAATGCTCATG+CGG | 0.652471 | 6:-102227844 | MsaT033913.1:CDS |
TGGACTGAACATATGAGCAA+AGG | 0.655558 | 6:+102224997 | None:intergenic |
CCTAGCAAGTAATGTTGCCG+GGG | 0.658672 | 6:+102223986 | None:intergenic |
TTACAGAATTTAAAACAACA+TGG | 0.659407 | 6:+102226917 | None:intergenic |
ATTTAACAGAGAATCAGGAG+GGG | 0.672016 | 6:-102225968 | MsaT033913.1:CDS |
TAAAATTATAAAGAACAACA+AGG | 0.674441 | 6:-102226797 | MsaT033913.1:CDS |
TAAAAGCTACATCCGATGTG+AGG | 0.675087 | 6:-102225063 | MsaT033913.1:CDS |
TGAAGAAGTTGACATTGCAA+AGG | 0.677003 | 6:-102227739 | MsaT033913.1:CDS |
AAATTTAACAGAGAATCAGG+AGG | 0.687710 | 6:-102225970 | MsaT033913.1:CDS |
CAAGCTCATGACCTGCACAC+AGG | 0.691098 | 6:-102226835 | MsaT033913.1:CDS |
TCATGACCTGCACACAGGTG+TGG | 0.696525 | 6:-102226830 | MsaT033913.1:CDS |
CAATGACCTTCACCTCACAT+CGG | 0.701300 | 6:+102225051 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr6 | gene | 102223454 | 102227922 | 102223454 | ID=MsaG033913 |
Chr6 | mRNA | 102223454 | 102227922 | 102223454 | ID=MsaT033913.1;Parent=MsaG033913 |
Chr6 | exon | 102223454 | 102223468 | 102223454 | ID=MsaT033913.1.exon7;Parent=MsaT033913.1 |
Chr6 | CDS | 102223454 | 102223468 | 102223454 | ID=cds.MsaT033913.1;Parent=MsaT033913.1 |
Chr6 | exon | 102223884 | 102224027 | 102223884 | ID=MsaT033913.1.exon6;Parent=MsaT033913.1 |
Chr6 | CDS | 102223884 | 102224027 | 102223884 | ID=cds.MsaT033913.1;Parent=MsaT033913.1 |
Chr6 | exon | 102224977 | 102225174 | 102224977 | ID=MsaT033913.1.exon5;Parent=MsaT033913.1 |
Chr6 | CDS | 102224977 | 102225174 | 102224977 | ID=cds.MsaT033913.1;Parent=MsaT033913.1 |
Chr6 | exon | 102225939 | 102226030 | 102225939 | ID=MsaT033913.1.exon4;Parent=MsaT033913.1 |
Chr6 | CDS | 102225939 | 102226030 | 102225939 | ID=cds.MsaT033913.1;Parent=MsaT033913.1 |
Chr6 | exon | 102226677 | 102226966 | 102226677 | ID=MsaT033913.1.exon3;Parent=MsaT033913.1 |
Chr6 | CDS | 102226677 | 102226966 | 102226677 | ID=cds.MsaT033913.1;Parent=MsaT033913.1 |
Chr6 | exon | 102227333 | 102227403 | 102227333 | ID=MsaT033913.1.exon2;Parent=MsaT033913.1 |
Chr6 | CDS | 102227333 | 102227403 | 102227333 | ID=cds.MsaT033913.1;Parent=MsaT033913.1 |
Chr6 | exon | 102227683 | 102227922 | 102227683 | ID=MsaT033913.1.exon1;Parent=MsaT033913.1 |
Chr6 | CDS | 102227683 | 102227922 | 102227683 | ID=cds.MsaT033913.1;Parent=MsaT033913.1 |
Gene Sequence |
Protein sequence |