AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG033918

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG033918 MtrunA17_Chr6g0480541 74.722 360 6 2 1 275 741 1100 9.11e-177 519
MsaG033918 MtrunA17_Chr6g0480481 96.319 163 6 0 113 275 38 200 1.05e-113 325
MsaG033918 MtrunA17_Chr5g0437131 65.829 199 32 1 113 275 407 605 8.70e-88 275
MsaG033918 MtrunA17_Chr6g0480491 96.460 113 4 0 1 113 50 162 4.06e-73 222
MsaG033918 MtrunA17_Chr8g0369241 39.175 194 83 3 115 273 145 338 1.12e-37 141
MsaG033918 MtrunA17_Chr1g0210061 35.354 198 89 4 116 275 617 813 5.79e-30 119
MsaG033918 MtrunA17_Chr3g0116701 34.272 213 86 6 115 273 100 312 5.22e-28 111
MsaG033918 MtrunA17_Chr4g0058241 34.272 213 86 5 115 273 104 316 3.09e-27 109
MsaG033918 MtrunA17_Chr3g0139371 31.925 213 92 4 115 274 80 292 1.15e-24 102
MsaG033918 MtrunA17_Chr3g0123491 32.093 215 90 7 115 273 99 313 7.98e-23 97.1
MsaG033918 MtrunA17_Chr1g0193081 28.151 238 122 7 85 274 37 273 8.33e-21 91.3
MsaG033918 MtrunA17_Chr1g0194201 30.435 207 109 7 101 273 67 272 3.34e-20 89.4
MsaG033918 MtrunA17_Chr7g0270371 29.469 207 111 6 101 273 67 272 5.82e-20 88.6
MsaG033918 MtrunA17_Chr2g0284091 29.469 207 111 6 101 273 32 237 1.30e-19 87.4
MsaG033918 MtrunA17_Chr2g0320011 28.986 207 112 6 101 273 80 285 1.86e-19 87.4
MsaG033918 MtrunA17_Chr7g0246591 29.952 207 110 8 101 273 133 338 1.20e-18 85.1
MsaG033918 MtrunA17_Chr2g0277011 28.986 207 112 6 101 273 82 287 1.70e-18 84.7
MsaG033918 MtrunA17_Chr7g0248461 45.455 99 44 4 177 272 143 234 2.40e-18 84.0
MsaG033918 MtrunA17_Chr8g0350311 28.019 207 114 7 101 273 131 336 2.86e-18 84.0
MsaG033918 MtrunA17_Chr4g0030151 43.878 98 45 4 177 271 144 234 3.06e-18 83.6
MsaG033918 MtrunA17_Chr8g0348481 44.444 99 45 4 177 272 142 233 5.17e-18 82.8
MsaG033918 MtrunA17_Chr2g0287271 31.429 210 88 8 112 274 28 228 1.17e-17 82.4
MsaG033918 MtrunA17_Chr5g0397261 43.434 99 46 4 177 272 146 237 1.51e-17 81.6
MsaG033918 MtrunA17_Chr4g0065851 31.100 209 88 8 112 273 28 227 1.97e-17 82.0
MsaG033918 MtrunA17_Chr4g0030241 43.299 97 45 4 177 270 6 95 2.15e-17 77.8
MsaG033918 MtrunA17_Chr8g0387401 43.434 99 46 4 177 272 157 248 2.31e-17 81.3
MsaG033918 MtrunA17_Chr4g0030231 43.299 97 45 4 177 270 145 234 5.87e-17 79.7
MsaG033918 MtrunA17_Chr4g0045841 43.299 97 45 4 177 270 160 249 8.19e-17 79.3
MsaG033918 MtrunA17_Chr3g0096631 30.622 209 89 8 112 273 28 227 2.14e-16 79.0
MsaG033918 MtrunA17_Chr3g0102571 42.391 92 47 3 183 270 186 275 3.50e-16 77.8
MsaG033918 MtrunA17_Chr3g0141871 40.816 98 47 4 177 270 137 227 1.04e-15 76.3
MsaG033918 MtrunA17_Chr8g0378831 43.333 90 45 3 185 270 140 227 1.92e-15 75.5
MsaG033918 MtrunA17_Chr5g0443351 28.986 207 97 7 112 274 25 225 1.92e-15 75.9
MsaG033918 MtrunA17_Chr8g0392811 29.126 206 96 6 112 273 120 319 3.26e-15 75.5
MsaG033918 MtrunA17_Chr8g0369451 42.105 95 49 3 181 272 103 194 3.34e-15 75.1
MsaG033918 MtrunA17_Chr3g0122781 37.500 128 73 4 150 272 486 611 3.44e-14 72.4
MsaG033918 MtrunA17_Chr8g0377071 36.719 128 74 4 150 272 455 580 4.88e-14 72.0
MsaG033918 MtrunA17_Chr4g0059751 35.484 93 60 0 181 273 197 289 1.18e-13 70.5
MsaG033918 MtrunA17_Chr4g0057791 42.708 96 49 3 181 272 322 415 1.91e-13 70.1
MsaG033918 MtrunA17_Chr4g0047201 36.458 96 57 2 182 275 307 400 3.06e-13 69.3
MsaG033918 MtrunA17_Chr2g0314321 36.508 126 40 6 177 273 130 244 6.18e-13 68.6
MsaG033918 MtrunA17_Chr4g0002001 40.000 95 52 3 181 271 122 215 1.24e-12 67.0
MsaG033918 MtrunA17_Chr4g0053951 34.454 119 71 4 156 271 193 307 1.45e-12 67.0
MsaG033918 MtrunA17_Chr7g0245031 36.559 93 59 0 181 273 249 341 1.67e-12 67.0
MsaG033918 MtrunA17_Chr2g0282321 36.522 115 60 4 172 275 249 361 1.68e-12 67.0
MsaG033918 MtrunA17_Chr6g0468751 31.088 193 99 7 115 275 25 215 2.28e-12 66.6
MsaG033918 MtrunA17_Chr4g0053821 34.454 119 71 4 156 271 162 276 2.55e-12 66.2
MsaG033918 MtrunA17_Chr1g0170551 29.843 191 102 6 113 273 11 199 3.64e-12 66.6
MsaG033918 MtrunA17_Chr1g0197721 31.373 102 55 2 186 274 157 256 4.87e-12 65.9
MsaG033918 MtrunA17_Chr4g0008561 30.570 193 97 11 115 273 25 214 5.20e-12 65.9
MsaG033918 MtrunA17_Chr6g0453681 30.570 193 100 7 115 275 25 215 7.96e-12 65.1
MsaG033918 MtrunA17_Chr4g0075541 36.066 122 63 4 156 273 173 283 8.46e-12 64.7
MsaG033918 MtrunA17_Chr1g0190131 38.298 94 54 2 182 273 111 202 1.14e-11 63.5
MsaG033918 MtrunA17_Chr2g0322401 40.217 92 47 3 184 273 110 195 1.27e-11 64.3
MsaG033918 MtrunA17_Chr4g0047211 32.292 96 61 2 182 275 146 239 1.57e-11 63.9
MsaG033918 MtrunA17_Chr4g0047191 32.292 96 61 2 182 275 151 244 1.63e-11 63.9
MsaG033918 MtrunA17_Chr8g0358921 39.175 97 54 3 181 273 153 248 1.91e-11 63.5
MsaG033918 MtrunA17_Chr5g0396361 40.860 93 48 4 186 273 247 337 2.03e-11 63.9
MsaG033918 MtrunA17_Chr4g0061141 37.634 93 51 3 186 273 212 302 2.17e-11 63.9
MsaG033918 MtrunA17_Chr3g0129721 44.086 93 45 3 186 273 130 220 2.51e-11 62.8
MsaG033918 MtrunA17_Chr4g0013131 29.744 195 101 7 113 273 16 208 2.83e-11 63.5
MsaG033918 MtrunA17_Chr3g0130151 30.827 133 84 4 146 272 309 439 4.66e-11 62.8
MsaG033918 MtrunA17_Chr4g0070851 31.944 144 89 5 136 273 125 265 6.07e-11 62.0
MsaG033918 MtrunA17_Chr5g0407121 43.333 60 32 1 216 275 252 309 6.50e-11 62.4
MsaG033918 MtrunA17_Chr1g0205421 28.646 192 101 6 115 272 18 207 8.98e-11 62.0
MsaG033918 MtrunA17_Chr1g0179611 39.130 69 40 1 207 275 308 374 9.93e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG033918 AT1G73450.1 54.902 357 69 4 7 275 691 1043 6.37e-107 335
MsaG033918 AT1G73460.2 54.469 358 72 5 7 275 705 1060 5.47e-104 327
MsaG033918 AT1G73460.1 54.469 358 72 5 7 275 705 1060 5.47e-104 327
MsaG033918 AT3G17750.1 50.980 357 84 5 7 275 676 1029 5.56e-97 308
MsaG033918 AT2G40120.1 64.322 199 35 1 113 275 265 463 1.08e-84 264
MsaG033918 AT5G35980.1 41.618 173 67 3 135 273 148 320 9.15e-36 135
MsaG033918 AT5G35980.3 41.618 173 67 3 135 273 113 285 1.17e-35 135
MsaG033918 AT5G35980.2 41.618 173 67 3 135 273 148 320 1.86e-35 135
MsaG033918 AT1G13350.1 34.343 198 91 4 116 275 449 645 1.14e-28 115
MsaG033918 AT1G13350.2 34.343 198 91 4 116 275 476 672 1.47e-28 115
MsaG033918 AT1G13350.3 34.343 198 91 4 116 275 522 718 2.30e-28 114
MsaG033918 AT4G24740.5 33.333 213 88 6 115 273 1 213 2.88e-28 108
MsaG033918 AT4G24740.6 33.333 213 88 6 115 273 1 213 7.17e-28 109
MsaG033918 AT4G24740.9 33.333 213 88 6 115 273 1 213 7.17e-28 109
MsaG033918 AT4G24740.2 33.333 213 88 6 115 273 1 213 7.17e-28 109
MsaG033918 AT4G24740.3 33.333 213 88 6 115 273 104 316 7.95e-28 110
MsaG033918 AT4G24740.1 33.333 213 88 6 115 273 104 316 1.64e-27 110
MsaG033918 AT4G24740.7 33.333 213 88 6 115 273 66 278 1.79e-27 109
MsaG033918 AT4G24740.4 33.019 212 88 6 115 272 104 315 5.63e-27 107
MsaG033918 AT3G53640.1 34.343 198 91 5 116 275 330 526 8.32e-27 109
MsaG033918 AT3G25840.1 32.828 198 94 4 116 275 624 820 1.07e-26 109
MsaG033918 AT3G25840.2 32.828 198 94 4 116 275 362 558 2.01e-26 108
MsaG033918 AT4G32660.2 31.455 213 91 4 115 273 77 288 1.62e-24 101
MsaG033918 AT3G53570.1 33.023 215 88 6 115 273 121 335 2.72e-24 101
MsaG033918 AT3G53570.4 33.023 215 88 6 115 273 121 335 2.72e-24 101
MsaG033918 AT3G53570.2 33.023 215 88 6 115 273 121 335 2.72e-24 101
MsaG033918 AT4G32660.3 31.455 213 91 4 115 273 69 280 2.94e-24 100
MsaG033918 AT3G53570.3 33.023 215 88 6 115 273 107 321 2.99e-24 101
MsaG033918 AT3G53570.5 33.023 215 88 6 115 273 107 321 2.99e-24 101
MsaG033918 AT4G32660.1 31.455 213 91 4 115 273 77 288 3.09e-24 100
MsaG033918 AT4G32660.4 42.609 115 44 2 181 273 62 176 3.67e-21 90.9
MsaG033918 AT5G26751.1 27.848 237 122 7 85 273 31 266 1.70e-20 90.5
MsaG033918 AT1G06390.2 29.808 208 111 6 101 274 62 268 2.75e-20 90.1
MsaG033918 AT1G06390.1 29.808 208 111 6 101 274 62 268 2.75e-20 90.1
MsaG033918 AT5G14640.1 28.992 238 120 7 85 274 36 272 4.30e-20 89.4
MsaG033918 AT5G14640.2 28.992 238 120 7 85 274 36 272 4.30e-20 89.4
MsaG033918 AT4G18710.2 29.327 208 112 6 101 274 26 232 6.12e-20 87.4
MsaG033918 AT4G24740.10 43.689 103 35 2 194 273 8 110 1.30e-19 85.5
MsaG033918 AT4G24740.8 43.689 103 35 2 194 273 8 110 1.30e-19 85.5
MsaG033918 AT1G09840.3 30.435 207 109 7 101 273 75 280 1.50e-19 88.2
MsaG033918 AT1G09840.7 30.435 207 109 7 101 273 75 280 1.50e-19 88.2
MsaG033918 AT1G09840.10 30.435 207 109 7 101 273 75 280 1.50e-19 88.2
MsaG033918 AT1G09840.6 30.435 207 109 7 101 273 75 280 1.50e-19 88.2
MsaG033918 AT1G09840.4 30.435 207 109 7 101 273 75 280 1.50e-19 88.2
MsaG033918 AT1G09840.1 30.435 207 109 7 101 273 75 280 1.50e-19 88.2
MsaG033918 AT1G09840.9 30.435 207 109 7 101 273 75 280 1.50e-19 88.2
MsaG033918 AT1G09840.5 30.435 207 109 7 101 273 75 280 1.50e-19 88.2
MsaG033918 AT1G09840.8 30.435 207 109 7 101 273 75 280 1.50e-19 88.2
MsaG033918 AT1G09840.2 30.435 207 109 7 101 273 75 280 1.50e-19 88.2
MsaG033918 AT3G05840.2 28.502 207 113 6 101 273 65 270 1.63e-19 87.8
MsaG033918 AT3G05840.1 28.502 207 113 6 101 273 65 270 1.63e-19 87.8
MsaG033918 AT4G18710.1 28.846 208 113 6 101 274 32 238 1.81e-19 87.4
MsaG033918 AT3G61160.3 30.918 207 108 7 102 274 95 300 2.95e-19 86.7
MsaG033918 AT3G61160.5 30.918 207 108 7 102 274 95 300 3.01e-19 87.0
MsaG033918 AT3G61160.6 30.918 207 108 7 102 274 102 307 3.68e-19 86.3
MsaG033918 AT2G30980.1 28.986 207 112 6 101 273 64 269 4.63e-19 86.7
MsaG033918 AT3G61160.2 30.918 207 108 7 102 274 102 307 4.88e-19 86.7
MsaG033918 AT3G61160.1 30.918 207 108 7 102 274 95 300 4.91e-19 86.7
MsaG033918 AT3G61160.4 30.918 207 108 7 102 274 95 300 5.20e-19 86.7
MsaG033918 AT4G11330.1 43.434 99 46 4 177 272 148 239 3.03e-18 84.0
MsaG033918 AT2G46070.2 41.489 94 54 1 181 273 145 238 3.61e-18 83.2
MsaG033918 AT2G46070.1 41.489 94 54 1 181 273 145 238 3.86e-18 83.6
MsaG033918 AT2G46070.3 41.489 94 54 1 181 273 179 272 4.90e-18 83.6
MsaG033918 AT1G57870.1 29.952 207 110 7 101 273 74 279 5.83e-18 83.6
MsaG033918 AT1G57870.4 29.952 207 110 7 101 273 74 279 5.83e-18 83.6
MsaG033918 AT1G57870.2 29.952 207 110 7 101 273 74 279 5.83e-18 83.6
MsaG033918 AT1G09840.11 43.810 105 54 4 173 273 50 153 6.64e-18 82.0
MsaG033918 AT1G57870.3 29.952 207 110 7 101 273 74 279 8.51e-18 83.2
MsaG033918 AT5G19010.1 30.802 237 101 9 84 273 7 227 1.01e-17 83.2
MsaG033918 AT1G01560.4 44.211 95 48 3 181 272 144 236 1.28e-17 80.9
MsaG033918 AT1G01560.1 44.211 95 48 3 181 272 144 236 1.28e-17 80.9
MsaG033918 AT1G01560.3 44.211 95 48 3 181 272 144 236 1.93e-17 81.3
MsaG033918 AT1G01560.2 44.211 95 48 3 181 272 144 236 2.76e-17 81.3
MsaG033918 AT4G01370.1 32.124 193 94 6 115 272 49 239 3.41e-17 80.9
MsaG033918 AT4G00720.1 27.692 260 141 8 48 273 89 335 1.46e-16 79.7
MsaG033918 AT3G45640.1 43.299 97 45 4 177 270 143 232 2.07e-16 78.6
MsaG033918 AT3G59790.1 41.237 97 47 4 177 270 165 254 2.48e-16 78.6
MsaG033918 AT2G43790.1 42.268 97 46 4 177 270 168 257 3.57e-16 78.2
MsaG033918 AT3G18040.2 40.541 111 43 5 175 273 38 137 7.92e-16 77.4
MsaG033918 AT1G07880.1 41.237 97 47 4 177 270 138 227 2.07e-15 74.3
MsaG033918 AT2G42880.1 39.640 111 44 5 175 273 128 227 2.32e-15 76.3
MsaG033918 AT2G01450.3 36.585 123 57 5 167 274 103 219 2.81e-15 75.9
MsaG033918 AT2G01450.1 36.585 123 57 5 167 274 103 219 2.81e-15 75.9
MsaG033918 AT2G01450.2 36.585 123 57 5 167 274 103 219 2.81e-15 75.9
MsaG033918 AT2G01450.4 36.585 123 57 5 167 274 103 219 2.81e-15 75.9
MsaG033918 AT2G42880.2 39.640 111 44 5 175 273 128 227 3.02e-15 75.5
MsaG033918 AT1G07880.2 41.237 97 47 4 177 270 138 227 3.40e-15 75.1
MsaG033918 AT3G14720.2 40.541 111 43 5 175 273 128 227 4.25e-15 75.1
MsaG033918 AT3G14720.3 40.541 111 43 5 175 273 128 227 4.25e-15 75.1
MsaG033918 AT4G36450.1 40.659 91 51 2 181 270 136 224 5.47e-15 74.3
MsaG033918 AT4G29810.1 33.099 142 88 4 136 273 125 263 5.58e-15 74.3
MsaG033918 AT4G29810.2 33.099 142 88 4 136 273 134 272 6.19e-15 74.3
MsaG033918 AT4G29810.3 33.099 142 88 4 136 273 134 272 8.69e-15 73.6
MsaG033918 AT1G59580.2 40.816 98 47 4 177 270 137 227 1.79e-14 73.2
MsaG033918 AT1G59580.1 40.816 98 47 4 177 270 137 227 1.79e-14 73.2
MsaG033918 AT1G10210.2 40.816 98 47 4 177 270 137 227 2.55e-14 72.4
MsaG033918 AT1G10210.3 40.816 98 47 4 177 270 137 227 2.55e-14 72.4
MsaG033918 AT1G10210.1 40.816 98 47 4 177 270 137 227 2.55e-14 72.4
MsaG033918 AT2G18170.1 40.816 98 47 4 177 270 137 227 3.99e-14 72.0
MsaG033918 AT2G34290.1 41.584 101 52 2 181 274 108 208 4.89e-14 70.9
MsaG033918 AT1G08650.2 40.000 95 54 2 182 274 119 212 7.62e-14 70.5
MsaG033918 AT1G08650.1 40.000 95 54 2 182 274 119 212 8.26e-14 70.5
MsaG033918 AT5G39440.1 30.729 192 100 7 115 275 25 214 1.92e-13 70.5
MsaG033918 AT2G42550.1 37.383 107 50 4 181 275 116 217 2.19e-13 69.7
MsaG033918 AT4G26890.1 37.234 94 55 2 181 274 104 193 5.01e-13 68.9
MsaG033918 AT1G76540.1 37.500 96 55 3 181 272 123 217 5.46e-13 68.2
MsaG033918 AT5G04510.2 32.710 107 57 2 181 274 145 249 5.53e-13 68.9
MsaG033918 AT2G05060.1 38.776 98 53 2 181 273 123 218 5.75e-13 68.2
MsaG033918 AT5G04510.1 32.710 107 57 2 181 274 145 249 6.84e-13 68.6
MsaG033918 AT5G55090.1 33.684 95 59 2 181 274 105 196 6.92e-13 68.6
MsaG033918 AT5G04510.3 32.710 107 57 2 181 274 145 249 1.01e-12 67.4
MsaG033918 AT5G55090.2 33.684 95 59 2 181 274 167 258 2.63e-12 67.0
MsaG033918 AT3G10540.1 31.776 107 58 2 181 274 146 250 3.05e-12 66.6
MsaG033918 AT1G53050.2 38.710 93 50 3 186 273 241 331 3.89e-12 66.6
MsaG033918 AT1G53050.1 38.710 93 50 3 186 273 241 331 3.89e-12 66.6
MsaG033918 AT3G01090.3 31.443 194 97 10 115 275 25 215 4.46e-12 66.2
MsaG033918 AT3G01090.1 31.443 194 97 10 115 275 25 215 4.46e-12 66.2
MsaG033918 AT3G01090.2 31.443 194 97 10 115 275 48 238 4.53e-12 66.2
MsaG033918 AT5G67380.1 33.613 119 72 4 156 271 183 297 5.23e-12 65.9
MsaG033918 AT3G08730.1 35.484 93 60 0 181 273 235 327 5.62e-12 65.9
MsaG033918 AT3G08730.2 35.484 93 60 0 181 273 235 327 5.62e-12 65.9
MsaG033918 AT5G67380.2 33.613 119 72 4 156 271 150 264 5.72e-12 65.9
MsaG033918 AT2G23070.1 32.773 119 73 4 156 271 205 319 6.24e-12 65.9
MsaG033918 AT3G50000.1 33.613 119 72 4 156 271 177 291 9.62e-12 65.1
MsaG033918 AT1G53570.6 33.333 135 78 5 146 272 279 409 1.03e-11 65.1
MsaG033918 AT1G53570.7 33.333 135 78 5 146 272 279 409 1.03e-11 65.1
MsaG033918 AT3G01085.1 37.634 93 51 3 186 273 222 312 1.21e-11 65.1
MsaG033918 AT3G01085.2 37.634 93 51 3 186 273 222 312 1.21e-11 65.1
MsaG033918 AT3G01085.3 37.634 93 51 3 186 273 222 312 1.21e-11 65.1
MsaG033918 AT3G29160.1 30.052 193 101 8 115 275 26 216 1.22e-11 65.1
MsaG033918 AT3G29160.2 30.052 193 101 8 115 275 26 216 1.22e-11 65.1
MsaG033918 AT3G08720.1 35.484 93 60 0 181 273 241 333 1.27e-11 64.7
MsaG033918 AT3G08720.3 35.484 93 60 0 181 273 241 333 1.27e-11 64.7
MsaG033918 AT3G08720.4 35.484 93 60 0 181 273 241 333 1.27e-11 64.7
MsaG033918 AT3G08720.2 35.484 93 60 0 181 273 241 333 1.27e-11 64.7
MsaG033918 AT1G50240.3 28.796 191 104 6 113 273 10 198 1.28e-11 65.5
MsaG033918 AT1G50240.2 28.796 191 104 6 113 273 10 198 1.28e-11 65.5
MsaG033918 AT1G53570.1 33.333 135 78 5 146 272 279 409 1.32e-11 65.1
MsaG033918 AT5G27790.1 37.383 107 53 2 181 273 127 233 1.35e-11 64.3
MsaG033918 AT1G53570.2 33.333 135 78 5 146 272 279 409 1.37e-11 65.1
MsaG033918 AT1G53570.3 33.333 135 78 5 146 272 279 409 1.37e-11 65.1
MsaG033918 AT3G29160.3 30.052 193 101 8 115 275 26 216 1.38e-11 64.3
MsaG033918 AT3G44850.1 44.068 59 33 0 217 275 319 377 1.41e-11 64.7
MsaG033918 AT1G53570.4 33.333 135 78 5 146 272 279 409 1.43e-11 65.1
MsaG033918 AT5G57630.1 30.000 190 100 6 115 273 18 205 1.57e-11 64.3
MsaG033918 AT5G57630.2 30.000 190 100 6 115 273 18 205 1.61e-11 64.3
MsaG033918 AT1G62400.1 36.066 122 63 4 156 273 172 282 1.64e-11 64.3
MsaG033918 AT3G04530.1 38.202 89 53 2 186 273 120 207 1.81e-11 63.5
MsaG033918 AT3G15220.1 41.053 95 50 3 183 273 116 208 1.85e-11 64.7
MsaG033918 AT2G41920.1 37.615 109 48 3 181 272 115 220 2.05e-11 63.5
MsaG033918 AT5G50860.1 33.654 104 62 3 175 273 210 311 2.92e-11 63.9
MsaG033918 AT2G41930.1 35.780 109 52 5 181 273 112 218 3.09e-11 63.5
MsaG033918 AT4G22940.2 25.455 220 125 8 90 273 85 301 4.16e-11 63.5
MsaG033918 AT5G50860.2 33.654 104 62 3 175 273 210 311 4.44e-11 63.2
MsaG033918 AT1G63700.1 31.694 183 114 6 98 272 416 595 4.98e-11 63.5
MsaG033918 AT1G63700.2 31.694 183 114 6 98 272 416 595 4.98e-11 63.5
MsaG033918 AT5G57630.3 39.583 96 53 3 181 273 24 117 5.73e-11 62.4
MsaG033918 AT1G33770.1 41.111 90 46 3 186 270 248 335 5.91e-11 63.2
MsaG033918 AT1G53165.1 29.048 210 114 8 96 273 2 208 6.42e-11 63.2
MsaG033918 AT4G22940.1 25.455 220 125 8 90 273 85 301 6.74e-11 62.8
MsaG033918 AT1G53165.3 29.048 210 114 8 96 273 2 208 7.07e-11 62.8
MsaG033918 AT1G53165.2 29.048 210 114 8 96 273 2 208 7.95e-11 62.8
MsaG033918 AT3G53030.1 46.429 56 30 0 220 275 307 362 9.01e-11 62.4

Find 55 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAAGCCGGAGAATATTT+TGG 0.240496 6:-102270670 MsaT033918.1:CDS
ATTTAACCATGGCGACTTAC+TGG 0.244009 6:+102272917 None:intergenic
TAAAGATAGCCAGATGATTC+AGG 0.272060 6:-102272949 None:intergenic
GTCAATTACCATTCAATGTT+TGG 0.292705 6:-102270736 MsaT033918.1:CDS
ATTACAAGGGAAGATGATTT+AGG 0.302027 6:-102272663 MsaT033918.1:CDS
CTTCACCCGAGAAAAGTTCT+AGG 0.316441 6:-102272803 MsaT033918.1:CDS
CTGATGAAATGCTTTCTTTG+TGG 0.383282 6:-102272845 MsaT033918.1:CDS
CATGCTTATTGACATACTTC+AGG 0.386561 6:+102271743 None:intergenic
CGTGCTCCGGAGGTTATTCT+CGG 0.419514 6:-102270549 MsaT033918.1:CDS
CTTCAATATTTACATAACCT+TGG 0.431917 6:-102270708 MsaT033918.1:CDS
AAGTGCTTCCAAACATTGAA+TGG 0.439190 6:+102270728 None:intergenic
CTGGTCCCTTGGATGCATCT+TGG 0.473461 6:-102270499 MsaT033918.1:CDS
CTGCAATTATCGACAGTAGT+TGG 0.478393 6:+102272738 None:intergenic
AAGATTGATATCTGGTCCCT+TGG 0.481494 6:-102270510 MsaT033918.1:CDS
TTTGCTCATATGTTCAGTCT+AGG 0.483006 6:-102270578 MsaT033918.1:CDS
AATAACCTCCGGAGCACGAT+AGG 0.490675 6:+102270554 None:intergenic
ACGACAAGAAGATTGATATC+TGG 0.491358 6:-102270518 MsaT033918.1:CDS
ATGAAGAAGTTGACATTACA+AGG 0.499940 6:-102272677 MsaT033918.1:CDS
GTCTAGGTCCTATCGTGCTC+CGG 0.502684 6:-102270562 MsaT033918.1:CDS
TATGTCAATAAGCATGATCC+TGG 0.504155 6:-102271736 MsaT033918.1:CDS
GATTGCTGCTGTGCAAGAGC+AGG 0.514712 6:-102272619 MsaT033918.1:intron
AGAGCATGTCAAGCTAGAAA+AGG 0.514729 6:-102272703 MsaT033918.1:CDS
AAAGATAGCCAGATGATTCA+GGG 0.519030 6:-102272948 None:intergenic
AAAAGCATTCATACAGTCAT+CGG 0.521280 6:+102272875 None:intergenic
GAGGTGAAGGTCATTGATCT+TGG 0.522315 6:-102270627 MsaT033918.1:CDS
TCAGGAGTTTGATCTCATCA+AGG 0.522969 6:+102271761 None:intergenic
ATCTTGGCAGAACTTTGTAC+TGG 0.534669 6:-102270483 MsaT033918.1:CDS
TTCACCCGAGAAAAGTTCTA+GGG 0.553463 6:-102272802 MsaT033918.1:CDS
AAACATCCACGCCTTTGTGC+AGG 0.555053 6:+102271827 None:intergenic
TATCATGTCACCGAGTATCT+GGG 0.558059 6:-102271886 MsaT033918.1:intron
AGCCAGATGATTCAGGGTGG+TGG 0.560576 6:-102272942 None:intergenic
AAAATGTGATACTTGTCTCC+AGG 0.560708 6:+102271718 None:intergenic
ATGAAATGCTTTCTTTGTGG+AGG 0.578857 6:-102272842 MsaT033918.1:CDS
GTTCTGCCAAGATGCATCCA+AGG 0.579553 6:+102270493 None:intergenic
AGTCACAATGTATTAGTCCA+AGG 0.583347 6:+102270691 None:intergenic
GCATTACAATTATTTAACCA+TGG 0.583609 6:+102272906 None:intergenic
AATACATTGTGACTTGAAGC+CGG 0.584972 6:-102270682 MsaT033918.1:CDS
ACGCCTTTGTGCAGGTCATG+AGG 0.589555 6:+102271835 None:intergenic
GTGCTCCGGAGGTTATTCTC+GGG 0.606254 6:-102270548 MsaT033918.1:CDS
GTGGTTCCAGTAAGTCGCCA+TGG 0.618707 6:-102272923 MsaT033918.1:CDS
CTACAGCCGATGTGAGGTGA+AGG 0.619012 6:-102270640 MsaT033918.1:CDS
TCATGACCTGCACAAAGGCG+TGG 0.619175 6:-102271833 MsaT033918.1:CDS
TGATTTAGGTGTCTCACAAG+AGG 0.624965 6:-102272649 MsaT033918.1:CDS
TTCTGCCAAGATGCATCCAA+GGG 0.630562 6:+102270494 None:intergenic
TAGACTGAACATATGAGCAA+AGG 0.647223 6:+102270580 None:intergenic
TAAAAGCTACAGCCGATGTG+AGG 0.648020 6:-102270646 MsaT033918.1:CDS
TAGGTCCTATCGTGCTCCGG+AGG 0.649968 6:-102270559 MsaT033918.1:CDS
GGATGAGAATAATGCTCATG+CGG 0.652471 6:-102272781 MsaT033918.1:CDS
GAAAGCCCGAGAATAACCTC+CGG 0.654181 6:+102270543 None:intergenic
ATGGTTAAATAATTGTAATG+CGG 0.657060 6:-102272904 MsaT033918.1:CDS
TAAAATTATAAAGAACAACA+AGG 0.674441 6:-102271800 MsaT033918.1:CDS
CAATGACCTTCACCTCACAT+CGG 0.686191 6:+102270634 None:intergenic
CAACCTCATGACCTGCACAA+AGG 0.691741 6:-102271838 MsaT033918.1:CDS
TGAAGAAGTTGACATTACAA+GGG 0.707878 6:-102272676 MsaT033918.1:CDS
GATAGCCAGATGATTCAGGG+TGG 0.778676 6:-102272945 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr6 gene 102270341 102272958 102270341 ID=MsaG033918
Chr6 mRNA 102270341 102272958 102270341 ID=MsaT033918.1;Parent=MsaG033918
Chr6 exon 102270341 102270346 102270341 ID=MsaT033918.1.exon4;Parent=MsaT033918.1
Chr6 CDS 102270341 102270346 102270341 ID=cds.MsaT033918.1;Parent=MsaT033918.1
Chr6 exon 102270479 102270757 102270479 ID=MsaT033918.1.exon3;Parent=MsaT033918.1
Chr6 CDS 102270479 102270757 102270479 ID=cds.MsaT033918.1;Parent=MsaT033918.1
Chr6 exon 102271690 102271893 102271690 ID=MsaT033918.1.exon2;Parent=MsaT033918.1
Chr6 CDS 102271690 102271893 102271690 ID=cds.MsaT033918.1;Parent=MsaT033918.1
Chr6 exon 102272620 102272958 102272620 ID=MsaT033918.1.exon1;Parent=MsaT033918.1
Chr6 CDS 102272620 102272958 102272620 ID=cds.MsaT033918.1;Parent=MsaT033918.1
Gene Sequence

>MsaT033918.1

ATGATTCAGGGTGGTGGTTCCAGTAAGTCGCCATGGTTAAATAATTGTAATGCGGATGAAACCGATGACTGTATGAATGCTTTTGAGGGATCTGATGAAATGCTTTCTTTGTGGAGGCAGAAGAGTAGTGATTCTTCACCCGAGAAAAGTTCTAGGGATGAGAATAATGCTCATGCGGTCAGATCTTCGAACTCTTCTCCAACTACTGTCGATAATTGCAGATGCGCTGATAAAGAGCATGTCAAGCTAGAAAAGGATGATGAAGAAGTTGACATTACAAGGGAAGATGATTTAGGTGTCTCACAAGAGGATGAAGAGATTGCTGCTGTGCAAGAGCAGTATCTGGGATCTGCTGCATTTAGTAAAGCTATACAACCTCATGACCTGCACAAAGGCGTGGATGTTTGTATTAAAATTATAAAGAACAACAAGGATTTCTTTGATCAAAGCCTTGATGAGATCAAACTCCTGAAGTATGTCAATAAGCATGATCCTGGAGACAAGTATCACATTTTGCGGTTGTATGATTATTTCTATTATAGATCAATTACCATTCAATGTTTGGAAGCACTTCAATATTTACATAACCTTGGACTAATACATTGTGACTTGAAGCCGGAGAATATTTTGGTTAAAAGCTACAGCCGATGTGAGGTGAAGGTCATTGATCTTGGAAGTAGTTGTTTTGAGACAGATCACCTTTGCTCATATGTTCAGTCTAGGTCCTATCGTGCTCCGGAGGTTATTCTCGGGCTTTCATACGACAAGAAGATTGATATCTGGTCCCTTGGATGCATCTTGGCAGAACTTTGTACTGGCAATGTCTAA
Protein sequence

>MsaT033918.1

MIQGGGSSKSPWLNNCNADETDDCMNAFEGSDEMLSLWRQKSSDSSPEKSSRDENNAHAVRSSNSSPTTVDNCRCADKEHVKLEKDDEEVDITREDDLGVSQEDEEIAAVQEQYLGSAAFSKAIQPHDLHKGVDVCIKIIKNNKDFFDQSLDEIKLLKYVNKHDPGDKYHILRLYDYFYYRSITIQCLEALQYLHNLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLSYDKKIDIWSLGCILAELCTGNV*