AlfalfaGEDB | MsaG034136

M. sativa ssp. caerulea / MsaG034136

KEGG: K09422
GO: GO:0000226 GO:0000278 GO:0000280 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022402 GO:0022607 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048285 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051225 GO:0051252 GO:0060255 GO:0065007 GO:0070925 GO:0071840 GO:0080090 GO:0090307 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902850 GO:1903047 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034136	XP_013452925.1	82.700	1052	90	9	1	967	1	1045	0.0	1640

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034136	sp\|Q54NA6\|MYBL_DICDI	39.781	274	145	5	376	629	525	798	1.04e-48	190
MsaG034136	sp\|Q54NA6\|MYBL_DICDI	33.588	131	73	3	362	480	620	748	4.09e-13	77.4
MsaG034136	sp\|Q54NA6\|MYBL_DICDI	29.834	181	109	7	365	528	567	746	1.19e-11	72.8

Showing 1 to 3 of 3 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034136	tr\|G8A0D0\|G8A0D0_MEDTR	82.700	1052	90	9	1	967	1	1045	0.0	1640

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG034136	TF	MYB

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG034135	MsaG034136	0.828385	1.656377e-54	4.579066e-52
MsaG034136	MsaG034141	0.878871	4.153910e-69	7.117347e-66

Showing 1 to 2 of 2 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034136	MtrunA17_Chr6g0483051	82.567	631	61	3	385	967	6	635	0.0	1022
MsaG034136	MtrunA17_Chr6g0483071	83.333	240	28	5	1	234	1	234	2.93e-109	337
MsaG034136	MtrunA17_Chr6g0483061	69.565	115	4	1	301	384	1	115	1.00e-44	158
MsaG034136	MtrunA17_Chr3g0139671	36.111	144	78	3	450	579	35	178	2.51e-20	97.1
MsaG034136	MtrunA17_Chr3g0139671	32.667	150	87	3	396	532	34	182	7.32e-18	89.4
MsaG034136	MtrunA17_Chr3g0139671	31.538	130	76	3	364	482	55	182	5.15e-13	73.6
MsaG034136	MtrunA17_Chr3g0139671	42.105	95	53	2	487	579	33	127	1.22e-12	72.4
MsaG034136	MtrunA17_Chr7g0238631	36.364	143	77	3	451	579	64	206	8.25e-20	94.7
MsaG034136	MtrunA17_Chr7g0238631	35.065	154	86	3	396	536	62	214	1.42e-18	90.5
MsaG034136	MtrunA17_Chr7g0238631	39.474	114	65	3	470	579	42	155	1.26e-15	81.3

Showing 1 to 10 of 28 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034136	AT3G18100.1	43.535	611	252	9	75	621	100	681	9.81e-157	483
MsaG034136	AT3G18100.2	49.682	471	183	6	202	621	1	468	4.32e-149	456
MsaG034136	AT3G18100.4	49.576	472	184	6	201	621	52	520	4.82e-149	458
MsaG034136	AT3G18100.3	38.512	605	281	13	75	621	62	633	1.20e-119	384
MsaG034136	AT5G11510.3	32.418	182	99	4	450	617	31	202	5.82e-23	106
MsaG034136	AT5G11510.3	32.667	150	87	3	396	532	30	178	3.65e-18	90.5
MsaG034136	AT5G11510.3	30.556	144	86	4	350	482	38	178	1.16e-12	72.8
MsaG034136	AT5G11510.1	32.418	182	99	4	450	617	31	202	5.82e-23	106
MsaG034136	AT5G11510.1	32.667	150	87	3	396	532	30	178	3.65e-18	90.5
MsaG034136	AT5G11510.1	30.556	144	86	4	350	482	38	178	1.16e-12	72.8

Showing 1 to 10 of 79 entries

Previous1 2 3 4 5…8Next

Find 227 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGTATCTAAGCAGGT+TGG	0.543436	6:-106618621	MsaT034136.1:CDS
AAACATCAATGTCGTTGAAG+AGG	0.543823	6:-106618205	MsaT034136.1:CDS
AAAGCATCTGCAATGTGTTA+TGG	0.421920	6:-106622559	MsaT034136.1:CDS
AAAGGAAGCATGGGCAGAGG+GGG	0.565557	6:-106623600	MsaT034136.1:CDS
AAAGGGTCGAATTCATCTCA+AGG	0.563869	6:-106618811	MsaT034136.1:CDS
AAATGCAGCTAGAAAATCAG+AGG	0.638930	6:-106618475	MsaT034136.1:CDS
AAATGGAGTGAAGATACTGA+AGG	0.645956	6:-106618384	MsaT034136.1:CDS
AACCAACCTATTCGAGCACT+GGG	0.582462	6:+106620917	None:intergenic
AACCTTATTGAATCAGTTAA+AGG	0.235058	6:-106622230	MsaT034136.1:CDS
AAGAAGGGTCCAAACTATTA+AGG	0.329261	6:+106619751	None:intergenic

Showing 1 to 10 of 227 entries

Previous1 2 3 4 5…23Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	106618068	106625760	106618068	ID=MsaG034136
Chr6	mRNA	106618068	106625760	106618068	ID=MsaT034136.1;Parent=MsaG034136
Chr6	exon	106618068	106618927	106618068	ID=MsaT034136.1.exon11;Parent=MsaT034136.1
Chr6	CDS	106618068	106618927	106618068	ID=cds.MsaT034136.1;Parent=MsaT034136.1
Chr6	exon	106619033	106619142	106619033	ID=MsaT034136.1.exon10;Parent=MsaT034136.1
Chr6	CDS	106619033	106619142	106619033	ID=cds.MsaT034136.1;Parent=MsaT034136.1
Chr6	exon	106619318	106619524	106619318	ID=MsaT034136.1.exon9;Parent=MsaT034136.1
Chr6	CDS	106619318	106619524	106619318	ID=cds.MsaT034136.1;Parent=MsaT034136.1
Chr6	exon	106619627	106619776	106619627	ID=MsaT034136.1.exon8;Parent=MsaT034136.1
Chr6	CDS	106619627	106619776	106619627	ID=cds.MsaT034136.1;Parent=MsaT034136.1
Chr6	exon	106619860	106620009	106619860	ID=MsaT034136.1.exon7;Parent=MsaT034136.1
Chr6	CDS	106619860	106620009	106619860	ID=cds.MsaT034136.1;Parent=MsaT034136.1
Chr6	exon	106620924	106620985	106620924	ID=MsaT034136.1.exon6;Parent=MsaT034136.1
Chr6	CDS	106620924	106620985	106620924	ID=cds.MsaT034136.1;Parent=MsaT034136.1
Chr6	exon	106621020	106621236	106621020	ID=MsaT034136.1.exon5;Parent=MsaT034136.1
Chr6	CDS	106621020	106621236	106621020	ID=cds.MsaT034136.1;Parent=MsaT034136.1
Chr6	exon	106622122	106622284	106622122	ID=MsaT034136.1.exon4;Parent=MsaT034136.1
Chr6	CDS	106622122	106622284	106622122	ID=cds.MsaT034136.1;Parent=MsaT034136.1
Chr6	exon	106622482	106622593	106622482	ID=MsaT034136.1.exon3;Parent=MsaT034136.1
Chr6	CDS	106622482	106622593	106622482	ID=cds.MsaT034136.1;Parent=MsaT034136.1
Chr6	exon	106623148	106623626	106623148	ID=MsaT034136.1.exon2;Parent=MsaT034136.1
Chr6	CDS	106623148	106623626	106623148	ID=cds.MsaT034136.1;Parent=MsaT034136.1
Chr6	exon	106625364	106625760	106625364	ID=MsaT034136.1.exon1;Parent=MsaT034136.1
Chr6	CDS	106625364	106625760	106625364	ID=cds.MsaT034136.1;Parent=MsaT034136.1

Gene Sequence

>MsaT034136.1

ATGTCACCACGCACCGACGAATACGAACAAGAAAACACCGACCATTCCCTCTCCGCCACCTCCTCCGATGACGACGACGATGGTCTCAAAGATGACATGGCAGCTCTCGCACGCGCTTGTAGATTCACCGCCGATGAAGACGAAATTGAAGAAGTAGAAGATCCGCTTTTATCCACCGGTGACGCTATTGTCCCTTTCACCTCCACTGCCACCGCCAATGAGGATTCTGACCCTGATGATGACCTAGAATGTCTAAAGAGAGTTCAGTCTCTCTACAAACCTACGGGGAATTCTGTTCCTTCGCCGGTGCCGATGATGGGTGATGATGATGAGGATGATGAAGATGATTTTGAAACTGTTCGCGCTATTTTCAAACGGTTTTCTGCTTACGATGGAGGTGGAAAGGAAGCATGGGCAGAGGGGGATCAGGCCTCGAGTTTAATGGATGAGCAGGATGTTGTCAAGAGCTCCACCTCTGACAACTCAGATGCCGGTGAATTGTGTCCTGATTCTCAAGACCCTGAGAATGACAGCAAGTTGAAATTGATTAAGCCATGTGGTGCTGATGAGACTTGTAAAAATGATGCGGGCTTGGCTTCTCAATTACCGAAGAAAAGGTCAAGCTTTCCTCCATCGGCCCAAGCTTTTATTGATGCGGTCAAGAAGAATAGAGCTCTCCAGAAATTTCTTAGAAGTAAGTTAATTGAAATTGAAGCAAAAATTGGGGAAAACAAAAAGATAAGGGACAATGTTAAACTCCTTAAGGATTTCCAGGTTTCATGCATTAGAAAAACGGGAAGTGCTTTTTCACTGAGAAAGGACCCGCGTGTGCAGTTAATATCATCCAAAAAGTCTTCTGCACCAAATAAATCAAAGAGCCATAATAAGAAAGCATCTGCAATGTGTTATGGCCCAGATGAGAATTCCCGTGTTGCTAACTATAAGATGGTATTGGAAAGATTTCCGCTATCATTGACTAAGAAAAATGAGTGTTTACCTGGAGATGCAAATGACATGGATAACCTTATTGAATCAGTTAAAGGTCTTGAAATCACACCTGCGATGATTAGAGAATTTTTACCTAAAGTTAATTGGGATCGATTGGCTTCTATGTATGCCACTGGCCGTACTGGTGCTGAATGTGAATCAAGGTGGTTGAATTGTGAAGACCCTTTGATCAACCATGGCCCATGGACTTCTGAAGAGGATAAATCTCTTTTGATTATTGTCCAAGAGAAGGGTATCAGGAACTGGTTTGACATTGCTGTATCATTGGCCACAAACAGGCTTCCATTTCAATGCTTGGCACGATTTCAAAGGAGCTTAAATCCTTCGATTATAAATAGTGAATGGACTGGGGAAGAAGATTGTGATTGGCAGTCTGTAGCTACGTATTTAGAACGGCGGACGGGAACCCAGTGCTCGAATAGATGGAAAAAATCAATTTGTCCTGTGAGGAAAGGGACCTTTACCCCTGAGGAGGACGAACGCCTTACTGTAGCGGTCATGCTGTTTGGACGGAAATGGAAGCAAATAGCCAAATATGTTCCTGGCCGTATCCAATCTCAGTGTAGGGACAGATACCTTAATAGTTTGGACCCTTCTTTGAAATGGAGTGAATGGACTAAAGAAGAGGATTCAAGATTAGAAGCTGCAATCACCAAATATGGATGTTGCTGGTCTAAGGTTGCTGAAGATGTGACTCCCCGCACTGATTGTCAATGCCGGAAGAGATGGATGGTGTTACATCCTGAACAAGCTCTTCTGCTTAAAGAAGCAAAAAAGAAGCAAAGGTCTCAGCTTTCCAGGAACTTTGTCGATCGAGAATCTGAACGGCCCGTCCTTCCAGTGAATGACTTAATTCCTTCACAAATGGTAGTTCCACCATCTGATGTTGGTGCTGAAAATCTCCGAAGGAATCGGAAGAGAAAGTCAAGTCACCAGAAAGAGAGGTCCAAAAAACATGCAAAGAGACTGGACTTTGTCCTGAGGAAGTACACGATGCAGATCCCAAGAAAGAGAGGCCTAAAAGACATGCAAAAAGAAGCATATAGTGATAAGATGAAGACTTCTGATCGAGGTGTTCCATTGTCTGAGCAAAGCGATGTTCTCAATAATATGAGATCTAAAAGACGTGCTAAAAAGGGTCGAATTCATCTCAAGGAAGTAGAGAAGAATATAGCATTTAGTGACAAGGTCAAGACCTGTAGCAAGAGTTCGGAAAGTCAAGATGGAGACGACATCACACTTGCATGCTGGCGCAACAAATTAAAGAAGAAACTATCTAACTGTACCAAAAATGCGAGCCAGACTTCGTCTCTCTCTAGGACAAAAATTGTATCTAAGCAGGTTGGAAATCAAATCCCATCTAATGAGCAAGACGGATTGTCTCTTACATGTGTTACTGGTGGAACTAAAGATTTGTTAATCCAGACAGAAGTTGATTCTAGTGAACAAGTGAGAAAACCAGAAGGTGAAAATGCAGCTAGAAAATCAGAGGATGCACATAATATGAATGGTGATGGCAAGGATAAGCCTCTTCAGGTCTATGTGAGAAGGAAAACAAAGAAATGGAGTGAAGATACTGAAGGATGCCGTGCTTGCTCTCCTTCCAAATTGAAAAAGGGATCTATGTTACTCAATGGAAACAAGCCAACCATCATTTCTGACGGCAGTGAACCATCCATGTCAAAAGTTGTTGTAGAGGAGACTGTTTTACATGGCGGTGTGGCTGAAGCTGAACCATCAAACATCAATGTCGTTGAAGAGGAGACTGATCTGCATGGTGGTGTTGCTCATGCTGAACCCACAGACATCAACATGGAAGAAAATGATGACGACCTTCCTCTTTCCACCTTGCAAAACAAGATAAGGAGACGAAAAAGACGGCACACCATTAGGAAATAA

Protein sequence

>MsaT034136.1

MSPRTDEYEQENTDHSLSATSSDDDDDGLKDDMAALARACRFTADEDEIEEVEDPLLSTGDAIVPFTSTATANEDSDPDDDLECLKRVQSLYKPTGNSVPSPVPMMGDDDEDDEDDFETVRAIFKRFSAYDGGGKEAWAEGDQASSLMDEQDVVKSSTSDNSDAGELCPDSQDPENDSKLKLIKPCGADETCKNDAGLASQLPKKRSSFPPSAQAFIDAVKKNRALQKFLRSKLIEIEAKIGENKKIRDNVKLLKDFQVSCIRKTGSAFSLRKDPRVQLISSKKSSAPNKSKSHNKKASAMCYGPDENSRVANYKMVLERFPLSLTKKNECLPGDANDMDNLIESVKGLEITPAMIREFLPKVNWDRLASMYATGRTGAECESRWLNCEDPLINHGPWTSEEDKSLLIIVQEKGIRNWFDIAVSLATNRLPFQCLARFQRSLNPSIINSEWTGEEDCDWQSVATYLERRTGTQCSNRWKKSICPVRKGTFTPEEDERLTVAVMLFGRKWKQIAKYVPGRIQSQCRDRYLNSLDPSLKWSEWTKEEDSRLEAAITKYGCCWSKVAEDVTPRTDCQCRKRWMVLHPEQALLLKEAKKKQRSQLSRNFVDRESERPVLPVNDLIPSQMVVPPSDVGAENLRRNRKRKSSHQKERSKKHAKRLDFVLRKYTMQIPRKRGLKDMQKEAYSDKMKTSDRGVPLSEQSDVLNNMRSKRRAKKGRIHLKEVEKNIAFSDKVKTCSKSSESQDGDDITLACWRNKLKKKLSNCTKNASQTSSLSRTKIVSKQVGNQIPSNEQDGLSLTCVTGGTKDLLIQTEVDSSEQVRKPEGENAARKSEDAHNMNGDGKDKPLQVYVRRKTKKWSEDTEGCRACSPSKLKKGSMLLNGNKPTIISDGSEPSMSKVVVEETVLHGGVAEAEPSNINVVEEETDLHGGVAHAEPTDINMEENDDDLPLSTLQNKIRRRKRRHTIRK*