AlfalfaGEDB | MsaG034245

M. sativa ssp. caerulea / MsaG034245

KEGG: K04730
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034245	XP_013452957.1	80.036	556	56	4	7	507	69	624	0.0	884

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034245	sp\|Q9C6K9\|LRL11_ARATH	44.828	290	109	6	258	496	278	567	2.16e-64	223
MsaG034245	sp\|Q9C6K9\|LRL11_ARATH	41.463	246	132	3	11	244	323	568	4.95e-45	170

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034245	tr\|A0A072UMA8\|A0A072UMA8_MEDTR	80.036	556	56	4	7	507	69	624	0.0	884

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034245	MtrunA17_Chr6g0483841	84.420	276	33	1	30	295	1	276	4.08e-165	468
MsaG034245	MtrunA17_Chr6g0483841	40.930	215	120	2	299	506	20	234	1.63e-45	160
MsaG034245	MtrunA17_Chr6g0483781	87.395	238	20	1	30	257	1	238	2.05e-147	421
MsaG034245	MtrunA17_Chr6g0483781	40.000	215	122	2	299	506	20	234	1.69e-45	159
MsaG034245	MtrunA17_Chr6g0483831	74.545	275	50	5	243	507	10	274	3.51e-135	392
MsaG034245	MtrunA17_Chr6g0483831	40.637	251	135	4	9	248	21	268	1.74e-54	184
MsaG034245	MtrunA17_Chr6g0483771	84.163	221	31	1	291	507	54	274	1.85e-131	382
MsaG034245	MtrunA17_Chr6g0483771	40.637	251	135	4	9	248	21	268	2.94e-53	181
MsaG034245	MtrunA17_Chr1g0209361	44.746	295	113	5	258	502	330	624	1.22e-64	222
MsaG034245	MtrunA17_Chr1g0209361	44.177	249	126	4	11	247	375	622	6.65e-54	192

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034245	AT1G25390.1	44.828	290	109	6	258	496	278	567	2.19e-65	223
MsaG034245	AT1G25390.1	41.463	246	132	3	11	244	323	568	5.03e-46	170
MsaG034245	AT1G25390.2	44.828	290	109	6	258	496	278	567	2.19e-65	223
MsaG034245	AT1G25390.2	41.463	246	132	3	11	244	323	568	5.03e-46	170
MsaG034245	AT1G18390.1	44.746	295	113	5	258	502	325	619	5.00e-65	223
MsaG034245	AT1G18390.1	37.600	250	143	4	11	248	370	618	1.70e-42	160
MsaG034245	AT1G18390.2	44.746	295	113	5	258	502	331	625	5.98e-65	223
MsaG034245	AT1G18390.2	37.600	250	143	4	11	248	376	624	6.07e-43	162
MsaG034245	AT5G38210.3	42.808	292	119	5	255	498	338	629	2.91e-63	218
MsaG034245	AT5G38210.3	41.079	241	129	4	17	245	390	629	1.01e-46	173

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Find 88 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAGCAATATTCTGC+TGG	0.482538	6:-108705460	MsaT034245.1:CDS
AAACCCTCAAATTTAATGCA+AGG	0.593988	6:-108705258	MsaT034245.1:CDS
AAATGCAAGCTCAGCCGTAG+CGG	0.650540	6:+108706661	None:intergenic
AACTTGAGTCCTATGTTATT+TGG	0.179348	6:+108705001	None:intergenic
AAGGCATAAGCAAAGGGAAA+TGG	0.378076	6:-108705032	MsaT034245.1:CDS
AATCGATATAGCAAATGCAT+TGG	0.580457	6:-108707076	MsaT034245.1:CDS
AATGAGTAAAATCTTAAACA+AGG	0.658845	6:-108705205	MsaT034245.1:CDS
ACAAGAATTAAGACCTAACA+TGG	0.592236	6:-108706621	MsaT034245.1:CDS
ACCCCAGAAAAGTGTCAAAC+TGG	0.451802	6:+108706122	None:intergenic
ACTATGGTAAGAAGCTGCAA+AGG	0.613717	6:-108706078	MsaT034245.1:intron

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	108705011	108708116	108705011	ID=MsaG034245
Chr6	mRNA	108705011	108708116	108705011	ID=MsaT034245.1;Parent=MsaG034245
Chr6	exon	108705011	108705662	108705011	ID=MsaT034245.1.exon5;Parent=MsaT034245.1
Chr6	CDS	108705011	108705662	108705011	ID=cds.MsaT034245.1;Parent=MsaT034245.1
Chr6	exon	108706079	108706187	108706079	ID=MsaT034245.1.exon4;Parent=MsaT034245.1
Chr6	CDS	108706079	108706187	108706079	ID=cds.MsaT034245.1;Parent=MsaT034245.1
Chr6	exon	108706558	108706890	108706558	ID=MsaT034245.1.exon3;Parent=MsaT034245.1
Chr6	CDS	108706558	108706890	108706558	ID=cds.MsaT034245.1;Parent=MsaT034245.1
Chr6	exon	108706920	108707333	108706920	ID=MsaT034245.1.exon2;Parent=MsaT034245.1
Chr6	CDS	108706920	108707333	108706920	ID=cds.MsaT034245.1;Parent=MsaT034245.1
Chr6	exon	108708101	108708116	108708101	ID=MsaT034245.1.exon1;Parent=MsaT034245.1
Chr6	CDS	108708101	108708116	108708101	ID=cds.MsaT034245.1;Parent=MsaT034245.1

Gene Sequence

>MsaT034245.1

ATGGGGTGGGATCTCTTCCAATGCTTCAATGAAGACAAGTACAGCATATTGAGACAGTTCATCGATGAAGCTGCATTCCTAAACTACATGCCACACAAAAACCTTGTTACAATTTATGGATGTGCGACTCATCAAAAGGAGTCCTTGCTAGTACACGAATACGTGTCCAACTGGACTCTTGCTGCTCATATTCAAGGCCGAATATCAGATAGTGGAACATCGTTAACTTGGCCTAACAGATTAGATATTGCAATCGATATAGCAAATGCATTGGAATATCTTCACTATAATGGCATTGTGCACCGTAATGTAATGTCTCACAATATTTTCCTTGATATAAATTTTTGTGCTAAAGTTGGTAACTTACATTTGTCAAAGAAACTTGATATTGGAGCAACCAAAGCTACAAGAGACTTGATCAGAACAAGTGGCTTACTTGGTGTCGAAAATGATGTTTATAGTTTTGGGGTGGTGTTGTGTGAGCTTGTGTCATCTATGCTTGCAGAATATTATATTCAGAATGAAGAAGAATGTCTGGCAACCCTTTTACGCAAAAAAGTTGAAAACCAAGCTTTAGTGGAGCAGTTGGATCAAAGACTTGGCTTCGAATCAGACCTTAAGATCAACAAGATGATGACCGCTACGGCTGAGCTTGCATTTTGGTGTTTGAAATGTCCACAAGAATTAAGACCTAACATGGAACAAGTGCTAGAGACTCTCCATGGCATAAAGCAAGGGAGATATGAGATAATTTCAATAAAAGCTTTCAAAATCTTCCACCATGCCGAACTTGAAGAAGCTACTAACCAGTTTGACACTTTTCTGGGGTCCGGAGGGTTCGGCAGAGTCTACTATGGTAAGAAGCTGCAAAGTTCACGTCGTAGCAACAAGCACATGCTGGTGTACGAGTACATCTCTAATGGAACTCTTACACAACATCTTCACGGATCTTCAAGTAGTAAACTATCATGGTTTACTAGATTGAATATTGCCATCGAAACTGCAAATGCCTTGGTATATCTTCACGACTCAGGTATCATCCATCGTGACATAAAAGGAAGCAATATTCTGCTGGATGAAAAAATTTCTGTTAAAGTTGCAGATTTTGGACTCTCGCGGTTACTTCCAGACAATGTTACCCATGTTTCAACTTTTCCGGTAGGAACTCATGCTTACATTGATCCAGATTACTATAAAACTGGAAGGGTCAGTGACAAAAATGATGTCTATTGCTTATTTGAGCTTATATCATCCAAACCCTCAAATTTAATGCAAGGCACCAAGCGTGTTACTCTTGCTCAATATGCAATGAGTAAAATCTTAAACAAGGAATTAGAGCTACTAGTGGATCAAAGTCTTCAAATTTCTTTTAATAAAAATGTAGTGGAAATGATAACAACAGGGACTGAGTTAGCATTTCAGTGTGTGCAGTGTCCCAAGGGACTCAGGCCAACCATGAAACAGGTTTTAGACACTCTACAAGGCATAAGCAAAGGGAAATGGGGATTCAACCAAATAACATAG

Protein sequence

>MsaT034245.1

MGWDLFQCFNEDKYSILRQFIDEAAFLNYMPHKNLVTIYGCATHQKESLLVHEYVSNWTLAAHIQGRISDSGTSLTWPNRLDIAIDIANALEYLHYNGIVHRNVMSHNIFLDINFCAKVGNLHLSKKLDIGATKATRDLIRTSGLLGVENDVYSFGVVLCELVSSMLAEYYIQNEEECLATLLRKKVENQALVEQLDQRLGFESDLKINKMMTATAELAFWCLKCPQELRPNMEQVLETLHGIKQGRYEIISIKAFKIFHHAELEEATNQFDTFLGSGGFGRVYYGKKLQSSRRSNKHMLVYEYISNGTLTQHLHGSSSSKLSWFTRLNIAIETANALVYLHDSGIIHRDIKGSNILLDEKISVKVADFGLSRLLPDNVTHVSTFPVGTHAYIDPDYYKTGRVSDKNDVYCLFELISSKPSNLMQGTKRVTLAQYAMSKILNKELELLVDQSLQISFNKNVVEMITTGTELAFQCVQCPKGLRPTMKQVLDTLQGISKGKWGFNQIT*