AlfalfaGEDB | MsaG034250

M. sativa ssp. caerulea / MsaG034250

KEGG: K04730
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF03004.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034250	XP_013452957.1	90.065	614	61	0	261	874	11	624	0.0	1150

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034250	sp\|Q9C6K9\|LRL11_ARATH	55.822	292	123	3	578	863	276	567	4.54e-99	325
MsaG034250	sp\|Q9C6K9\|LRL11_ARATH	43.974	307	170	2	263	567	263	569	1.39e-64	231

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034250	tr\|A0A072UMA8\|A0A072UMA8_MEDTR	90.065	614	61	0	261	874	11	624	0.0	1150

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG006274	MsaG034250	0.800166	2.735987e-48	3.713024e-46
MsaG007168	MsaG034250	0.800460	2.385518e-48	3.259082e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034250	MtrunA17_Chr6g0483831	91.852	270	22	0	605	874	5	274	9.73e-179	516
MsaG034250	MtrunA17_Chr6g0483831	42.222	270	152	2	302	570	2	268	1.78e-66	223
MsaG034250	MtrunA17_Chr6g0483771	89.630	270	28	0	605	874	5	274	7.07e-175	506
MsaG034250	MtrunA17_Chr6g0483771	42.222	270	152	2	302	570	2	268	3.03e-65	219
MsaG034250	MtrunA17_Chr6g0483841	89.925	268	27	0	342	609	1	268	5.52e-172	499
MsaG034250	MtrunA17_Chr6g0483841	42.553	235	131	2	642	873	1	234	5.35e-54	189
MsaG034250	MtrunA17_Chr6g0483781	92.437	238	18	0	342	579	1	238	1.23e-156	457
MsaG034250	MtrunA17_Chr6g0483781	42.489	233	130	2	644	873	3	234	1.87e-54	189
MsaG034250	MtrunA17_Chr1g0209361	56.610	295	123	3	580	869	330	624	9.49e-99	323
MsaG034250	MtrunA17_Chr1g0209361	45.752	306	160	4	269	569	318	622	2.87e-72	251

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034250	AT1G25390.1	55.822	292	123	3	578	863	276	567	4.62e-100	325
MsaG034250	AT1G25390.1	43.974	307	170	2	263	567	263	569	1.41e-65	231
MsaG034250	AT1G25390.2	55.822	292	123	3	578	863	276	567	4.62e-100	325
MsaG034250	AT1G25390.2	43.974	307	170	2	263	567	263	569	1.41e-65	231
MsaG034250	AT1G66880.3	55.862	290	125	2	577	863	332	621	1.42e-96	317
MsaG034250	AT1G66880.3	40.303	330	183	6	256	580	316	636	2.85e-63	226
MsaG034250	AT1G18390.1	55.254	295	127	3	580	869	325	619	1.64e-96	316
MsaG034250	AT1G18390.1	41.554	296	170	3	277	570	324	618	1.44e-61	221
MsaG034250	AT1G18390.2	55.254	295	127	3	580	869	331	625	3.42e-96	315
MsaG034250	AT1G18390.2	41.554	296	170	3	277	570	330	624	1.38e-61	221

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Find 159 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTAAAGACGGCAGAG+AGG	0.726033	6:-108766263	MsaT034250.1:CDS
AAAAGCGACGTCTATAGCTT+TGG	0.439247	6:-108765782	MsaT034250.1:CDS
AAAAGGAAGCAATATTCTGC+TGG	0.482538	6:-108765945	MsaT034250.1:CDS
AAACCGGCAAGTTTAATGCA+AGG	0.640775	6:-108765731	MsaT034250.1:CDS
AAATGCAAGCTCAGCCGTAG+CGG	0.650540	6:+108767153	None:intergenic
AACAAGTGGTTATGTAGACC+CGG	0.601346	6:-108767398	MsaT034250.1:CDS
AACATAGTGTGATTGCAATG+TGG	0.719640	6:-108773548	MsaT034250.1:CDS
AACTTGAGTCCTATGTTATT+TGG	0.179348	6:+108765474	None:intergenic
AAGAAACTGTGGAAATTATC+AGG	0.377751	6:+108769925	None:intergenic
AAGGCATAAGCAAAGGGAAA+TGG	0.378076	6:-108765505	MsaT034250.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	108765484	108773640	108765484	ID=MsaG034250
Chr6	mRNA	108765484	108773640	108765484	ID=MsaT034250.1;Parent=MsaG034250
Chr6	exon	108765484	108766286	108765484	ID=MsaT034250.1.exon9;Parent=MsaT034250.1
Chr6	CDS	108765484	108766286	108765484	ID=cds.MsaT034250.1;Parent=MsaT034250.1
Chr6	exon	108766587	108766679	108766587	ID=MsaT034250.1.exon8;Parent=MsaT034250.1
Chr6	CDS	108766587	108766679	108766587	ID=cds.MsaT034250.1;Parent=MsaT034250.1
Chr6	exon	108767050	108767856	108767050	ID=MsaT034250.1.exon7;Parent=MsaT034250.1
Chr6	CDS	108767050	108767856	108767050	ID=cds.MsaT034250.1;Parent=MsaT034250.1
Chr6	exon	108768457	108768599	108768457	ID=MsaT034250.1.exon6;Parent=MsaT034250.1
Chr6	CDS	108768457	108768599	108768457	ID=cds.MsaT034250.1;Parent=MsaT034250.1
Chr6	exon	108769915	108769969	108769915	ID=MsaT034250.1.exon5;Parent=MsaT034250.1
Chr6	CDS	108769915	108769969	108769915	ID=cds.MsaT034250.1;Parent=MsaT034250.1
Chr6	exon	108772020	108772362	108772020	ID=MsaT034250.1.exon4;Parent=MsaT034250.1
Chr6	CDS	108772020	108772362	108772020	ID=cds.MsaT034250.1;Parent=MsaT034250.1
Chr6	exon	108772944	108773035	108772944	ID=MsaT034250.1.exon3;Parent=MsaT034250.1
Chr6	CDS	108772944	108773035	108772944	ID=cds.MsaT034250.1;Parent=MsaT034250.1
Chr6	exon	108773234	108773414	108773234	ID=MsaT034250.1.exon2;Parent=MsaT034250.1
Chr6	CDS	108773234	108773414	108773234	ID=cds.MsaT034250.1;Parent=MsaT034250.1
Chr6	exon	108773533	108773640	108773533	ID=MsaT034250.1.exon1;Parent=MsaT034250.1
Chr6	CDS	108773533	108773640	108773533	ID=cds.MsaT034250.1;Parent=MsaT034250.1

Gene Sequence

>MsaT034250.1

ATGAAGCAAAAGTTTGACGGATGTTGGACAACGTATGGAGAACTAAAGGCTGAAAAGAAAAAAAACGGGAAACATAGTGTGATTGCAATGTGGTTTAGAGAGTTTAATAGGAAGTTTAAGTGGCTACCTGAACTTGATGGAGAGATTAAGAAGTCATTTGACCATAAAGCCTCTCAGTTATACTCAAGTGCAATGTATAGGGTCAGAAAAGGGGAAGATGATGGTGATTGGATTCCAGTTGAAATGCGTAAGAAATTGGATGCAAAATGGAGTGAGGATGAATGGAAAATTACTCCAACATCTTGGGAAATATTTGAATACACACACAAATTGAAAGGTGATCCAAGCAAGTGGGTTTCCGCAAAAGAAAAGGATATTGCTGATGAGTTTGAAAAAAGGATTATTGAGAGGGATTCACATGAGGAGGCACTAGGGGATGATGTTTCTACACATGAAAGTGACAACATTATCTTCTTAGATGTTGTTGGAGGAGTAAATAAGAAGGGTCGTATATATGGTTTGGGCCTGGAAGCAGGGAAATATAAGCCGTCTAGATCTTCCAGATCTGACGGCATCTTACAATCTGAATTTGAACAAATGAGGGCTGAAAATGCATCACTTAAAGAGAAATTGAAGGCTCATGAGGAGTTGATTCGTGCATCGCAGGAAGATTCACGTTTTCTTAGGGAGCAAATGACTAAATTGATGGAAATGGTTTCTCAAGGGCAGACAGAACAACGTTGGTTCCTGATAATTTCCACAGTTTCTTGGTTCCCAAGCTTCACTAGCACTTCTGACACATTTCGAAATCAGAATAAATCGAAGTGGCAAATCTTCTCATATGAGCAACTTAGAAAAGCCACATATTATTTTGATCAATCTCGTATTCTTGATCAGAAAGGCTCTGCCACTGTATATTATGGAAAACTTAAGAATGGTTGTGAGATTGCAGTCCAATGCTTCAATGAAGACAAGTACAGCATATTGAGACAGTTCATCGATGAAGCTGCATTCCTAAACTACATGCCACACAAAAACCTTGTTACAATTTATGGATGTGCGACTCATCAAAAGGAGTCCTTGCTAGTACACGAATACGTGTCCAACGGGACTCTTGCTGCTCATATTCAAGGCCGAATATCAGATAGCGGAACATCGTTAACTTGGCCTAACAGATTAGATATTGCAATCGATATAGCAAATGCATTGGAATATCTTCACTATAATGGCATTGTGCACCGTAATGTAATGTCTCACAATATTTTCCTTGATATAAATTTTTGTGCTAAAGTTGGTAACTTACATTTGTCAAAGAAACTTGATATTGGAGCAACCAAAGCTACAAGAGACTTGATCAGAACAAGTGGTTATGTAGACCCGGAACTTGTGTCAAAAGGCTTACTTGGTGTCGAAAATGATGTTTATAGTTTTGGGGTGGTGTTGTGTGAGCTTGTGTCATCTATGCTTGCAGAATATTATATTCAGAATGAAGAAGAATGTCTGGCAACCCTTTTACGCAAAAAAGTTGAAAACCAAGCTTTAGTGGAGCTGTTGGATCAAAGACTTGGCTTCGAATCAGACCTTAAGATCAACAAGATGATGACCGCTACGGCTGAGCTTGCATTTTGGTGTTTGAAATGTCCACAAGAATTAAGACCTAACATGGAACAAGTGCTAGAGACTCTCCATGGCATAAAGCAAGGGAGATATGAGATAATTTCAATAAAAGCTTTCAAAATCTTCCACCATGCCGAACTTGAAGAAGCTACTAACCAGTTTGACACTTTTCTGGGGTCTGGAGGGTTCGGCAGAGTCTACTATGGAAAACTTAAAGACGGCAGAGAGGTTGCAATAAAACGTTTCCATGAAGAGACAGAAAAAACCATTAATCAATTCATGAAAGAAATTGAGATCTTAAGTCACCTGCATCATGAAAATCTGGTTTCACTTTACGGCTGCAGTTCTCGTCATAGCAACAAGCACATGCTTGTGTACGAGTACATCTCTAATGGAACTCTTACACAACATCTTCACGGATCTTCATGTAGTAAACTATCATGGCTTACTAGATTGAATATTGCCATTGAAACTGCGAACGCCTTGGTATATCTTCACGACTCAGGTATCATCCATCGTGACATAAAAGGAAGCAATATTCTGCTGGATGAAAAATTTTCCGTCAAAGTTGCAGATTTTGGACTCTCGCGGTTACTTCCAGGCAATGTTACCCATGTTTCAACTTTTCCGGTAGGAACTCATGCTTACATTGATCCAGATTACTATAAAACTGGAAGGGTCAGTGAGAAAAGCGACGTCTATAGCTTTGGAGTGCTCTTATTTGAGCTTATATCATCGAAACCGGCAAGTTTAATGCAAGGCACCAAGCGTGTTACTCTTGCACAATATGCAATGAGTAAAATCTTAAACAAGGAATTAGAGCTACTAGTGGATCAAAGTCTTCAAATTTCTTTTAATAAAAATGTAGTGGAAATGATAACAACAGTGACTGAGTTAGCATTTCAGTGTGTGCAGTGTCCCAAGGGACTCAGGCCAACCATGAAACAGGTTTTAGACACTCTACAAGGCATAAGCAAAGGGAAATGGGGATTCAACCAAATAACATAG

Protein sequence

>MsaT034250.1

MKQKFDGCWTTYGELKAEKKKNGKHSVIAMWFREFNRKFKWLPELDGEIKKSFDHKASQLYSSAMYRVRKGEDDGDWIPVEMRKKLDAKWSEDEWKITPTSWEIFEYTHKLKGDPSKWVSAKEKDIADEFEKRIIERDSHEEALGDDVSTHESDNIIFLDVVGGVNKKGRIYGLGLEAGKYKPSRSSRSDGILQSEFEQMRAENASLKEKLKAHEELIRASQEDSRFLREQMTKLMEMVSQGQTEQRWFLIISTVSWFPSFTSTSDTFRNQNKSKWQIFSYEQLRKATYYFDQSRILDQKGSATVYYGKLKNGCEIAVQCFNEDKYSILRQFIDEAAFLNYMPHKNLVTIYGCATHQKESLLVHEYVSNGTLAAHIQGRISDSGTSLTWPNRLDIAIDIANALEYLHYNGIVHRNVMSHNIFLDINFCAKVGNLHLSKKLDIGATKATRDLIRTSGYVDPELVSKGLLGVENDVYSFGVVLCELVSSMLAEYYIQNEEECLATLLRKKVENQALVELLDQRLGFESDLKINKMMTATAELAFWCLKCPQELRPNMEQVLETLHGIKQGRYEIISIKAFKIFHHAELEEATNQFDTFLGSGGFGRVYYGKLKDGREVAIKRFHEETEKTINQFMKEIEILSHLHHENLVSLYGCSSRHSNKHMLVYEYISNGTLTQHLHGSSCSKLSWLTRLNIAIETANALVYLHDSGIIHRDIKGSNILLDEKFSVKVADFGLSRLLPGNVTHVSTFPVGTHAYIDPDYYKTGRVSEKSDVYSFGVLLFELISSKPASLMQGTKRVTLAQYAMSKILNKELELLVDQSLQISFNKNVVEMITTVTELAFQCVQCPKGLRPTMKQVLDTLQGISKGKWGFNQIT*