AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG034297

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG034297 MtrunA17_Chr1g0209661 69.412 85 26 0 3 87 20 104 1.01e-37 128
MsaG034297 MtrunA17_Chr6g0450101 60.000 85 34 0 3 87 7 91 8.05e-35 117
MsaG034297 MtrunA17_Chr7g0228231 61.728 81 31 0 7 87 11 91 2.76e-34 116
MsaG034297 MtrunA17_Chr1g0194291 58.974 78 32 0 10 87 21 98 2.34e-30 107
MsaG034297 MtrunA17_Chr4g0068921 58.621 87 36 0 1 87 15 101 3.61e-30 105
MsaG034297 MtrunA17_Chr2g0293911 60.920 87 34 0 1 87 15 101 1.45e-29 107
MsaG034297 MtrunA17_Chr1g0194301 50.602 83 41 0 5 87 28 110 3.58e-27 100
MsaG034297 MtrunA17_Chr1g0186061 50.633 79 39 0 11 89 21 99 2.77e-26 97.4
MsaG034297 MtrunA17_Chr1g0168661 51.899 79 38 0 11 89 22 100 2.83e-26 97.4
MsaG034297 MtrunA17_Chr8g0346561 52.564 78 37 0 10 87 12 89 2.46e-23 90.5
MsaG034297 MtrunA17_Chr7g0275911 53.846 78 36 0 10 87 12 89 3.59e-23 89.0
MsaG034297 MtrunA17_Chr5g0395221 51.190 84 39 1 3 86 7 88 8.23e-23 84.0
MsaG034297 MtrunA17_Chr1g0187761 51.282 78 38 0 10 87 12 89 2.93e-22 86.7
MsaG034297 MtrunA17_Chr1g0167691 50.000 78 39 0 10 87 12 89 3.74e-22 86.3
MsaG034297 MtrunA17_Chr4g0037141 57.534 73 31 0 15 87 17 89 4.42e-22 86.7
MsaG034297 MtrunA17_Chr4g0039971 48.780 82 42 0 6 87 9 90 4.95e-22 87.4
MsaG034297 MtrunA17_Chr3g0115821 48.780 82 42 0 6 87 8 89 4.98e-22 87.4
MsaG034297 MtrunA17_Chr4g0070641 51.282 78 38 0 10 87 12 89 4.98e-22 84.3
MsaG034297 MtrunA17_Chr7g0274581 48.718 78 40 0 10 87 12 89 6.23e-22 84.7
MsaG034297 MtrunA17_Chr2g0327821 46.835 79 42 0 9 87 5 83 1.23e-21 84.7
MsaG034297 MtrunA17_Chr5g0395281 48.780 82 42 0 6 87 8 89 1.46e-21 85.9
MsaG034297 MtrunA17_Chr7g0261281 50.000 80 40 0 10 89 12 91 1.70e-21 85.1
MsaG034297 MtrunA17_Chr5g0410961 48.780 82 42 0 6 87 8 89 2.21e-21 85.9
MsaG034297 MtrunA17_Chr3g0099141 41.463 82 48 0 6 87 36 117 2.39e-21 81.6
MsaG034297 MtrunA17_Chr4g0070611 51.282 78 38 0 10 87 12 89 5.46e-21 84.3
MsaG034297 MtrunA17_Chr8g0343831 45.570 79 43 0 9 87 7 85 8.85e-21 82.8
MsaG034297 MtrunA17_Chr2g0323321 46.341 82 44 0 6 87 7 88 1.21e-20 79.0
MsaG034297 MtrunA17_Chr4g0048511 51.282 78 38 0 10 87 13 90 1.22e-20 84.0
MsaG034297 MtrunA17_Chr8g0385321 50.685 73 36 0 15 87 17 89 1.96e-20 82.8
MsaG034297 MtrunA17_Chr2g0323411 48.780 82 42 0 6 87 8 89 2.53e-20 82.8
MsaG034297 MtrunA17_Chr1g0154031 44.872 78 43 0 10 87 76 153 2.64e-20 83.2
MsaG034297 MtrunA17_Chr8g0342531 41.379 87 51 0 2 88 4 90 2.78e-20 79.7
MsaG034297 MtrunA17_Chr8g0354661 44.872 78 43 0 10 87 37 114 3.03e-20 83.6
MsaG034297 MtrunA17_Chr3g0121241 46.154 78 42 0 10 87 42 119 3.27e-20 82.0
MsaG034297 MtrunA17_Chr2g0281071 50.000 78 39 0 10 87 13 90 3.28e-20 82.4
MsaG034297 MtrunA17_Chr8g0342511 41.667 84 49 0 2 85 4 87 3.88e-20 77.4
MsaG034297 MtrunA17_Chr1g0167661 46.154 78 42 0 10 87 12 89 4.16e-20 80.9
MsaG034297 MtrunA17_Chr3g0099131 43.590 78 44 0 10 87 41 118 4.74e-20 82.8
MsaG034297 MtrunA17_Chr3g0080861 43.590 78 44 0 10 87 37 114 5.32e-20 82.8
MsaG034297 MtrunA17_Chr2g0294811 45.455 77 42 0 10 86 12 88 6.37e-20 77.4
MsaG034297 MtrunA17_Chr1g0180391 45.977 87 43 1 1 87 14 96 6.49e-20 80.1
MsaG034297 MtrunA17_Chr3g0131121 53.425 73 34 0 15 87 17 89 9.25e-20 80.9
MsaG034297 MtrunA17_Chr4g0042611 43.210 81 46 0 6 86 8 88 1.09e-19 75.9
MsaG034297 MtrunA17_Chr1g0194951 46.154 78 42 0 10 87 12 89 1.26e-19 81.3
MsaG034297 MtrunA17_Chr4g0068061 46.154 78 42 0 10 87 12 89 1.40e-19 80.9
MsaG034297 MtrunA17_Chr4g0030881 44.048 84 40 1 11 87 8 91 1.88e-19 79.3
MsaG034297 MtrunA17_Chr1g0203411 44.872 78 43 0 10 87 12 89 2.82e-19 79.3
MsaG034297 MtrunA17_Chr5g0397231 43.023 86 49 0 2 87 4 89 3.17e-19 79.7
MsaG034297 MtrunA17_Chr6g0453471 43.902 82 46 0 6 87 8 89 4.27e-19 79.7
MsaG034297 MtrunA17_Chr4g0055981 44.706 85 47 0 3 87 48 132 4.98e-19 77.8
MsaG034297 MtrunA17_Chr8g0387421 43.023 86 49 0 2 87 4 89 4.99e-19 79.0
MsaG034297 MtrunA17_Chr5g0417821 46.250 80 43 0 10 89 7 86 5.92e-19 78.6
MsaG034297 MtrunA17_Chr7g0270891 44.304 79 44 0 9 87 11 89 6.20e-19 79.3
MsaG034297 MtrunA17_Chr5g0435101 43.902 82 46 0 6 87 7 88 8.25e-19 77.0
MsaG034297 MtrunA17_Chr1g0151941 43.373 83 46 1 6 87 8 90 1.01e-18 77.4
MsaG034297 MtrunA17_Chr7g0217741 44.872 78 43 0 10 87 12 89 1.02e-18 78.2
MsaG034297 MtrunA17_Chr6g0452271 41.463 82 48 0 6 87 8 89 1.15e-18 78.2
MsaG034297 MtrunA17_Chr1g0193801 43.038 79 45 0 9 87 11 89 1.40e-18 78.2
MsaG034297 MtrunA17_Chr8g0360111 46.154 78 42 0 10 87 25 102 1.56e-18 77.0
MsaG034297 MtrunA17_Chr4g0022901 46.250 80 43 0 10 89 13 92 1.60e-18 77.0
MsaG034297 MtrunA17_Chr8g0342461 40.909 88 51 1 2 88 4 91 1.74e-18 74.3
MsaG034297 MtrunA17_Chr2g0330041 39.535 86 52 0 2 87 4 89 1.98e-18 78.2
MsaG034297 MtrunA17_Chr4g0044421 47.945 73 38 0 15 87 17 89 2.00e-18 75.5
MsaG034297 MtrunA17_Chr8g0349261 45.679 81 43 1 10 89 13 93 2.68e-18 77.0
MsaG034297 MtrunA17_Chr4g0022911 46.250 80 43 0 10 89 13 92 2.95e-18 76.6
MsaG034297 MtrunA17_Chr4g0022881 45.455 77 42 0 11 87 13 89 3.08e-18 75.9
MsaG034297 MtrunA17_Chr5g0434831 44.872 78 43 0 10 87 7 84 3.26e-18 74.7
MsaG034297 MtrunA17_Chr8g0342471 40.909 88 51 1 2 88 4 91 4.60e-18 73.2
MsaG034297 MtrunA17_Chr4g0042671 44.872 78 43 0 10 87 12 89 4.68e-18 77.0
MsaG034297 MtrunA17_Chr5g0434841 47.436 78 41 0 10 87 20 97 5.09e-18 76.3
MsaG034297 MtrunA17_Chr8g0342541 39.535 86 52 0 2 87 4 89 6.12e-18 76.3
MsaG034297 MtrunA17_Chr4g0022931 45.000 80 44 0 10 89 13 92 6.25e-18 75.5
MsaG034297 MtrunA17_Chr2g0311221 43.902 82 46 0 6 87 10 91 7.24e-18 75.9
MsaG034297 MtrunA17_Chr4g0057031 42.683 82 47 0 6 87 8 89 7.85e-18 75.1
MsaG034297 MtrunA17_Chr2g0323351 46.341 82 44 0 10 91 12 93 7.87e-18 75.1
MsaG034297 MtrunA17_Chr7g0254411 42.308 78 45 0 10 87 12 89 9.53e-18 75.9
MsaG034297 MtrunA17_Chr2g0309911 39.535 86 52 0 2 87 3 88 1.01e-17 75.5
MsaG034297 MtrunA17_Chr6g0453211 40.244 82 49 0 6 87 8 89 1.04e-17 75.5
MsaG034297 MtrunA17_Chr5g0434911 43.590 78 44 0 10 87 21 98 1.11e-17 75.1
MsaG034297 MtrunA17_Chr7g0240821 49.315 73 37 0 15 87 6 78 1.13e-17 74.3
MsaG034297 MtrunA17_Chr1g0193371 41.772 79 46 0 9 87 11 89 1.14e-17 75.9
MsaG034297 MtrunA17_Chr7g0217221 39.286 84 51 0 6 89 8 91 1.34e-17 74.7
MsaG034297 MtrunA17_Chr7g0228891 42.683 82 47 0 6 87 8 89 2.43e-17 73.9
MsaG034297 MtrunA17_Chr2g0322521 43.678 87 45 1 5 87 20 106 3.29e-17 74.7
MsaG034297 MtrunA17_Chr4g0060721 40.000 80 48 0 10 89 13 92 3.39e-17 74.3
MsaG034297 MtrunA17_Chr7g0220341 42.500 80 44 1 10 87 25 104 3.72e-17 73.6
MsaG034297 MtrunA17_Chr3g0088461 40.506 79 47 0 9 87 21 99 4.75e-17 73.9
MsaG034297 MtrunA17_Chr3g0103281 42.308 78 45 0 10 87 12 89 6.12e-17 73.6
MsaG034297 MtrunA17_Chr5g0434931 42.308 78 45 0 10 87 35 112 6.92e-17 72.8
MsaG034297 MtrunA17_Chr8g0342521 38.372 86 53 0 2 87 4 89 7.22e-17 73.6
MsaG034297 MtrunA17_Chr2g0328771 41.026 78 46 0 10 87 20 97 8.99e-17 72.8
MsaG034297 MtrunA17_Chr4g0022891 44.872 78 43 0 10 87 12 89 9.36e-17 72.0
MsaG034297 MtrunA17_Chr4g0032401 41.772 79 46 0 9 87 16 94 9.49e-17 72.8
MsaG034297 MtrunA17_Chr3g0092401 39.744 78 47 0 10 87 13 90 1.27e-16 72.4
MsaG034297 MtrunA17_Chr4g0058631 41.772 79 46 0 9 87 11 89 1.29e-16 72.8
MsaG034297 MtrunA17_Chr8g0334881 37.500 88 54 1 1 87 1 88 1.85e-16 72.0
MsaG034297 MtrunA17_Chr1g0211161 39.535 86 52 0 2 87 5 90 1.91e-16 70.9
MsaG034297 MtrunA17_Chr1g0192411 40.000 85 51 0 3 87 5 89 1.96e-16 72.4
MsaG034297 MtrunA17_Chr7g0271241 40.506 79 47 0 9 87 11 89 2.08e-16 72.4
MsaG034297 MtrunA17_Chr7g0228991 42.308 78 45 0 10 87 29 106 5.44e-16 70.5
MsaG034297 MtrunA17_Chr5g0425591 35.526 76 49 0 9 84 8 83 7.05e-16 66.6
MsaG034297 MtrunA17_Chr3g0110351 40.244 82 49 0 6 87 8 89 7.38e-16 70.5
MsaG034297 MtrunA17_Chr5g0434571 40.244 82 49 0 6 87 44 125 1.49e-15 69.7
MsaG034297 MtrunA17_Chr6g0487491 41.379 87 50 1 6 91 8 94 1.50e-15 68.9
MsaG034297 MtrunA17_Chr7g0269831 43.590 78 44 0 10 87 12 89 2.56e-15 69.3
MsaG034297 MtrunA17_Chr3g0117091 40.506 79 47 0 9 87 11 89 3.85e-15 68.6
MsaG034297 MtrunA17_Chr3g0135311 40.964 83 48 1 6 87 8 90 5.00e-15 68.2
MsaG034297 MtrunA17_Chr8g0342481 37.931 87 53 1 2 87 4 90 6.57e-15 68.2
MsaG034297 MtrunA17_Chr1g0203441 40.260 77 46 0 11 87 14 90 9.99e-15 67.0
MsaG034297 MtrunA17_Chr2g0327351 39.759 83 49 1 6 87 8 90 1.06e-14 67.4
MsaG034297 MtrunA17_Chr5g0440781 35.526 76 49 0 9 84 11 86 1.30e-14 65.5
MsaG034297 MtrunA17_Chr4g0028311 39.759 83 49 1 6 87 8 90 2.14e-14 66.6
MsaG034297 MtrunA17_Chr6g0470971 40.260 77 46 0 11 87 15 91 2.79e-14 65.9
MsaG034297 MtrunA17_Chr5g0440761 38.571 70 43 0 15 84 17 86 4.41e-14 65.1
MsaG034297 MtrunA17_Chr5g0441141 35.526 76 49 0 9 84 11 86 4.99e-14 65.1
MsaG034297 MtrunA17_Chr4g0054391 38.554 83 50 1 6 87 8 90 8.15e-14 64.7
MsaG034297 MtrunA17_Chr1g0157731 37.975 79 48 1 9 87 88 165 3.23e-13 63.5
MsaG034297 MtrunA17_Chr4g0072751 38.554 83 50 1 6 87 8 90 3.71e-13 63.2
MsaG034297 MtrunA17_Chr4g0013361 35.443 79 50 1 10 87 10 88 3.80e-13 62.8
MsaG034297 MtrunA17_Chr5g0401731 38.158 76 46 1 14 89 17 91 3.91e-13 62.8
MsaG034297 MtrunA17_Chr1g0152011 37.349 83 51 1 6 87 8 90 4.38e-13 62.8
MsaG034297 MtrunA17_Chr6g0453751 32.967 91 53 1 2 84 12 102 7.33e-13 59.7
MsaG034297 MtrunA17_Chr6g0454921 35.632 87 55 1 3 89 6 91 8.48e-13 60.8
MsaG034297 MtrunA17_Chr5g0400821 37.349 83 51 1 6 87 8 90 8.74e-13 62.0
MsaG034297 MtrunA17_Chr7g0264641 37.349 83 51 1 6 87 8 90 1.68e-12 60.8
MsaG034297 MtrunA17_Chr6g0460661 43.836 73 40 1 15 87 19 90 2.28e-12 58.9
MsaG034297 MtrunA17_Chr7g0238631 40.000 80 45 2 9 87 110 187 7.07e-12 59.7
MsaG034297 MtrunA17_Chr7g0238651 39.744 78 45 1 12 87 7 84 2.24e-11 58.2
MsaG034297 MtrunA17_Chr4g0053431 34.211 76 49 1 14 89 7 81 2.91e-11 57.4
MsaG034297 MtrunA17_Chr3g0139671 34.177 79 51 1 9 87 82 159 5.27e-11 57.0
MsaG034297 MtrunA17_Chr5g0441131 30.263 76 53 0 9 84 8 83 6.91e-11 55.5
MsaG034297 MtrunA17_Chr3g0133601 32.895 76 50 1 14 89 39 113 8.94e-11 55.8
MsaG034297 MtrunA17_Chr4g0008551 36.486 74 46 1 14 87 40 112 9.27e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG034297 AT5G40350.1 61.728 81 31 0 7 87 14 94 4.54e-34 116
MsaG034297 AT3G27810.1 60.759 79 31 0 9 87 19 97 2.08e-33 115
MsaG034297 AT1G68320.1 65.432 81 28 0 7 87 16 96 5.13e-33 115
MsaG034297 AT1G25340.1 65.823 79 27 0 9 87 17 95 1.39e-32 114
MsaG034297 AT2G47190.1 55.422 83 37 0 5 87 15 97 7.65e-31 109
MsaG034297 AT1G48000.1 58.228 79 33 0 9 87 31 109 4.52e-30 107
MsaG034297 AT3G01530.1 54.217 83 38 0 5 87 20 102 1.21e-29 105
MsaG034297 AT1G25340.2 62.025 79 25 1 9 87 17 90 1.40e-27 101
MsaG034297 AT1G25340.3 62.025 79 25 1 9 87 17 90 2.40e-27 101
MsaG034297 AT3G30210.1 51.250 80 39 0 10 89 27 106 2.04e-26 98.2
MsaG034297 AT3G24310.1 53.165 79 37 0 11 89 19 97 3.44e-26 97.4
MsaG034297 AT4G13480.1 51.899 79 38 0 11 89 7 85 5.68e-26 97.1
MsaG034297 AT3G06490.1 55.814 86 38 0 2 87 11 96 1.39e-25 97.1
MsaG034297 AT5G49620.1 56.627 83 36 0 5 87 21 103 1.66e-25 96.7
MsaG034297 AT5G49620.2 58.025 81 34 0 5 85 21 101 7.92e-25 95.1
MsaG034297 AT5G16770.4 53.659 82 38 0 6 87 8 89 1.08e-23 92.0
MsaG034297 AT5G16770.3 53.659 82 38 0 6 87 8 89 1.08e-23 92.0
MsaG034297 AT5G16770.1 53.659 82 38 0 6 87 8 89 1.35e-23 92.0
MsaG034297 AT5G16770.2 53.659 82 38 0 6 87 8 89 1.35e-23 92.0
MsaG034297 AT3G53200.1 50.602 83 41 0 5 87 4 86 2.27e-23 89.7
MsaG034297 AT3G02940.2 52.439 82 39 0 6 87 8 89 4.23e-23 90.1
MsaG034297 AT3G02940.1 52.439 82 39 0 6 87 8 89 5.01e-23 90.1
MsaG034297 AT3G02940.3 52.439 82 39 0 6 87 8 89 5.01e-23 90.1
MsaG034297 AT3G27920.1 43.373 83 47 0 5 87 9 91 1.00e-22 87.8
MsaG034297 AT5G40330.1 44.444 81 45 0 7 87 9 89 1.13e-22 87.4
MsaG034297 AT5G59780.3 48.101 79 41 0 9 87 7 85 1.40e-22 87.4
MsaG034297 AT4G34990.1 58.904 73 30 0 15 87 17 89 1.76e-22 88.2
MsaG034297 AT1G22640.1 56.164 73 32 0 15 87 17 89 2.15e-22 87.4
MsaG034297 AT3G23250.1 51.282 78 38 0 10 87 12 89 7.45e-22 86.7
MsaG034297 AT1G35515.1 52.564 78 37 0 10 87 12 89 7.51e-22 85.1
MsaG034297 AT3G46130.1 48.052 77 40 0 11 87 10 86 7.78e-22 85.9
MsaG034297 AT4G09460.1 54.795 73 33 0 15 87 17 89 9.26e-22 85.5
MsaG034297 AT3G13540.1 47.436 78 41 0 10 87 23 100 1.02e-21 85.5
MsaG034297 AT5G14750.1 44.304 79 44 0 9 87 15 93 3.63e-21 83.2
MsaG034297 AT4G38620.1 54.795 73 33 0 15 87 17 89 3.77e-21 84.7
MsaG034297 AT2G16720.1 50.000 78 39 0 10 87 12 89 8.50e-21 83.6
MsaG034297 AT3G61250.1 45.122 82 45 0 6 87 8 89 8.62e-21 84.0
MsaG034297 AT5G49330.1 50.000 78 39 0 10 87 12 89 2.97e-20 83.2
MsaG034297 AT2G47460.1 47.436 78 41 0 10 87 12 89 5.09e-20 82.8
MsaG034297 AT5G35550.1 48.101 79 41 0 9 87 13 91 5.79e-20 81.3
MsaG034297 AT5G61420.2 48.718 78 40 0 10 87 12 89 6.95e-20 82.0
MsaG034297 AT1G79180.1 48.780 82 42 0 6 87 10 91 9.22e-20 81.3
MsaG034297 AT5G07690.1 48.718 78 40 0 10 87 12 89 1.02e-19 81.6
MsaG034297 AT4G28110.1 47.561 82 43 0 6 87 8 89 1.15e-19 80.9
MsaG034297 AT4G05100.1 50.000 78 39 0 10 87 13 90 1.49e-19 80.9
MsaG034297 AT1G09540.1 45.570 79 43 0 9 87 11 89 1.58e-19 81.3
MsaG034297 AT4G21440.1 48.718 78 40 0 10 87 12 89 1.58e-19 81.3
MsaG034297 AT5G07700.1 48.718 78 40 0 10 87 12 89 1.61e-19 80.9
MsaG034297 AT5G07700.2 48.718 78 40 0 10 87 12 89 1.61e-19 80.9
MsaG034297 AT5G10280.1 43.529 85 48 0 5 89 7 91 1.64e-19 80.9
MsaG034297 AT3G01140.2 45.122 82 45 0 6 87 8 89 1.65e-19 80.9
MsaG034297 AT5G65230.1 45.238 84 46 0 4 87 6 89 1.84e-19 80.5
MsaG034297 AT3G01140.1 45.122 82 45 0 6 87 51 132 2.32e-19 80.9
MsaG034297 AT5G54230.1 44.872 78 43 0 10 87 12 89 3.23e-19 80.1
MsaG034297 AT5G06100.5 41.463 82 48 0 6 87 28 109 3.94e-19 80.5
MsaG034297 AT5G06100.2 41.463 82 48 0 6 87 28 109 3.94e-19 80.5
MsaG034297 AT5G06100.3 41.463 82 48 0 6 87 28 109 3.94e-19 80.5
MsaG034297 AT5G06100.4 41.463 82 48 0 6 87 28 109 3.94e-19 80.5
MsaG034297 AT2G32460.1 43.590 78 44 0 10 87 18 95 4.37e-19 80.5
MsaG034297 AT5G06100.1 41.463 82 48 0 6 87 28 109 4.48e-19 80.5
MsaG034297 AT3G11440.3 42.308 78 45 0 10 87 41 118 4.95e-19 80.5
MsaG034297 AT3G11440.4 42.308 78 45 0 10 87 41 118 4.95e-19 80.5
MsaG034297 AT3G11440.1 42.308 78 45 0 10 87 41 118 4.95e-19 80.5
MsaG034297 AT2G32460.2 43.590 78 44 0 10 87 6 83 4.95e-19 80.1
MsaG034297 AT2G31180.1 46.154 78 42 0 10 87 12 89 5.11e-19 78.6
MsaG034297 AT3G62610.1 46.250 80 43 0 10 89 12 91 6.17e-19 79.3
MsaG034297 AT1G34670.1 47.561 82 43 0 6 87 8 89 6.25e-19 79.7
MsaG034297 AT3G11440.2 42.308 78 45 0 10 87 41 118 7.68e-19 79.7
MsaG034297 AT1G57560.2 44.304 79 44 0 9 87 11 89 1.19e-18 77.8
MsaG034297 AT5G55020.1 41.026 78 46 0 10 87 26 103 1.27e-18 79.3
MsaG034297 AT1G06180.1 46.154 78 42 0 10 87 12 89 1.30e-18 77.4
MsaG034297 AT5G15310.4 43.902 82 46 0 6 87 8 89 1.36e-18 77.4
MsaG034297 AT5G60890.1 47.436 78 41 0 10 87 12 89 1.73e-18 77.8
MsaG034297 AT1G57560.1 44.304 79 44 0 9 87 11 89 1.97e-18 77.8
MsaG034297 AT4G26930.1 42.308 78 45 0 10 87 19 96 2.12e-18 78.2
MsaG034297 AT1G63910.1 41.860 86 50 0 2 87 4 89 2.28e-18 78.2
MsaG034297 AT1G16490.1 43.902 82 46 0 6 87 10 91 2.62e-18 77.0
MsaG034297 AT5G15310.2 43.902 82 46 0 6 87 8 89 3.22e-18 77.0
MsaG034297 AT1G74080.1 46.154 78 42 0 10 87 12 89 3.26e-18 77.4
MsaG034297 AT5G15310.1 43.902 82 46 0 6 87 8 89 3.32e-18 77.4
MsaG034297 AT3G08500.1 43.038 79 45 0 9 87 29 107 3.36e-18 77.4
MsaG034297 AT1G66370.1 45.238 84 46 0 4 87 2 85 5.04e-18 75.9
MsaG034297 AT2G26960.1 40.698 86 47 1 6 87 12 97 5.71e-18 77.0
MsaG034297 AT1G08810.1 40.476 84 50 0 6 89 8 91 7.52e-18 75.9
MsaG034297 AT3G47600.1 41.463 82 48 0 6 87 8 89 7.82e-18 76.3
MsaG034297 AT3G13890.2 39.535 86 52 0 2 87 4 89 8.50e-18 76.3
MsaG034297 AT4G01680.3 40.506 79 47 0 9 87 11 89 8.62e-18 75.1
MsaG034297 AT5G26660.1 41.772 79 46 0 9 87 11 89 8.82e-18 76.3
MsaG034297 AT1G74650.1 41.772 79 46 0 9 87 11 89 1.03e-17 75.9
MsaG034297 AT1G18570.1 44.578 83 46 0 5 87 8 90 1.19e-17 75.9
MsaG034297 AT4G22680.1 43.902 82 46 0 6 87 8 89 1.38e-17 75.1
MsaG034297 AT5G14340.1 43.902 82 46 0 6 87 20 101 2.05e-17 74.7
MsaG034297 AT4G01680.1 40.506 79 47 0 9 87 11 89 2.64e-17 75.1
MsaG034297 AT1G74430.1 46.154 78 42 0 10 87 12 89 3.84e-17 73.9
MsaG034297 AT5G62470.2 42.308 78 45 0 10 87 12 89 4.51e-17 74.3
MsaG034297 AT4G17785.2 43.210 81 46 0 7 87 10 90 5.42e-17 74.3
MsaG034297 AT4G17785.1 43.210 81 46 0 7 87 10 90 5.56e-17 74.3
MsaG034297 AT3G28910.1 40.244 82 49 0 6 87 8 89 6.80e-17 73.6
MsaG034297 AT5G12870.1 37.975 79 49 0 9 87 17 95 7.86e-17 73.2
MsaG034297 AT5G52600.1 41.026 78 46 0 10 87 12 89 8.16e-17 71.6
MsaG034297 AT5G56110.1 41.026 78 46 0 10 87 12 89 8.67e-17 73.6
MsaG034297 AT3G27810.2 60.417 48 19 0 40 87 1 48 8.93e-17 71.2
MsaG034297 AT1G66380.2 47.436 78 41 0 10 87 8 85 1.07e-16 69.3
MsaG034297 AT3G12720.1 38.750 80 49 0 8 87 20 99 1.35e-16 72.8
MsaG034297 AT3G12820.1 42.683 82 47 0 6 87 10 91 1.38e-16 72.0
MsaG034297 AT1G56160.1 41.463 82 48 0 6 87 10 91 1.50e-16 72.4
MsaG034297 AT4G12350.1 42.683 82 47 0 6 87 8 89 2.17e-16 72.0
MsaG034297 AT1G66230.1 42.683 82 47 0 6 87 8 89 3.15e-16 71.6
MsaG034297 AT5G40350.2 62.222 45 17 0 43 87 5 49 4.10e-16 69.3
MsaG034297 AT5G16600.1 42.683 82 47 0 6 87 8 89 4.82e-16 71.2
MsaG034297 AT3G48920.1 38.961 77 47 0 11 87 19 95 6.50e-16 70.5
MsaG034297 AT1G18710.1 41.463 82 48 0 10 91 12 93 8.97e-16 70.1
MsaG034297 AT3G28470.1 35.366 82 53 0 6 87 8 89 1.22e-15 70.1
MsaG034297 AT1G66380.1 49.206 63 32 0 10 72 8 70 1.51e-15 67.0
MsaG034297 AT5G62320.1 39.326 89 47 1 6 87 9 97 2.59e-15 68.6
MsaG034297 AT5G23000.1 39.759 83 49 1 6 87 8 90 4.60e-15 68.6
MsaG034297 AT3G13890.1 35.789 95 52 1 2 87 4 98 4.90e-15 68.9
MsaG034297 AT2G36890.1 40.964 83 48 1 6 87 8 90 1.04e-14 67.4
MsaG034297 AT5G62470.1 41.026 78 45 1 10 87 12 88 1.10e-14 67.8
MsaG034297 AT1G56650.1 50.794 63 31 0 10 72 8 70 1.11e-14 67.0
MsaG034297 AT2G36890.2 40.964 83 48 1 6 87 49 131 1.42e-14 67.4
MsaG034297 AT4G25560.1 38.961 77 47 0 11 87 11 87 1.43e-14 67.0
MsaG034297 AT4G37780.1 37.349 83 51 1 6 87 8 90 2.63e-14 66.6
MsaG034297 AT3G60460.1 36.250 80 50 1 9 87 10 89 3.09e-14 66.2
MsaG034297 AT4G01680.2 35.165 91 47 1 9 87 11 101 4.73e-14 65.9
MsaG034297 AT4G37260.1 35.632 87 55 1 5 91 6 91 1.69e-13 64.3
MsaG034297 AT1G66390.1 46.154 78 42 0 10 87 8 85 1.70e-13 63.9
MsaG034297 AT1G79180.2 33.913 115 43 1 6 87 10 124 1.74e-13 64.3
MsaG034297 AT5G65790.1 39.759 83 49 1 6 87 8 90 2.23e-13 64.3
MsaG034297 AT2G23290.1 39.474 76 45 1 14 89 15 89 3.93e-13 63.2
MsaG034297 AT3G49690.1 38.554 83 50 1 6 87 8 90 6.08e-13 62.8
MsaG034297 AT3G46130.3 53.191 47 22 0 41 87 8 54 1.74e-12 60.8
MsaG034297 AT5G52260.1 40.260 77 46 0 11 87 13 89 1.75e-12 61.2
MsaG034297 AT3G09370.3 36.709 79 49 1 9 87 140 217 2.12e-12 61.6
MsaG034297 AT3G09370.2 36.709 79 49 1 9 87 132 209 2.24e-12 61.2
MsaG034297 AT3G09370.1 36.709 79 49 1 9 87 127 204 2.40e-12 61.2
MsaG034297 AT5G57620.1 37.349 83 51 1 6 87 8 90 3.04e-12 60.8
MsaG034297 AT3G53200.2 53.333 45 21 0 43 87 9 53 4.05e-12 59.7
MsaG034297 AT5G11510.2 38.750 80 46 2 9 87 78 155 5.04e-12 60.5
MsaG034297 AT5G11510.5 38.750 80 46 2 9 87 78 155 5.24e-12 60.5
MsaG034297 AT5G11510.3 38.750 80 46 2 9 87 78 155 5.50e-12 60.5
MsaG034297 AT5G11510.1 38.750 80 46 2 9 87 78 155 5.50e-12 60.5
MsaG034297 AT5G11510.4 38.750 80 46 2 9 87 78 155 5.50e-12 60.5
MsaG034297 AT5G59780.2 53.333 45 21 0 43 87 20 64 8.50e-12 58.9
MsaG034297 AT3G46130.4 53.333 45 21 0 43 87 20 64 1.03e-11 58.9
MsaG034297 AT3G27785.1 40.541 74 41 2 15 87 192 263 3.52e-11 58.2

Find 17 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATGACTATGAACTTAGA+AGG 0.363354 6:-109834567 MsaT034297.1:CDS
AATTTCTTGGCTATGAGTTC+AGG 0.367797 6:-109834475 MsaT034297.1:intron
TGAAGGGCGATGGAATTTCT+TGG 0.406645 6:-109834488 MsaT034297.1:CDS
GAGAAGATTGCCATGCATAA+TGG 0.434075 6:-109834592 None:intergenic
GATTTAGGATTAAGGAGGAC+AGG 0.469432 6:-109834370 MsaT034297.1:intron
ATCAAACACATTGCTAATCA+TGG 0.478221 6:-109834511 MsaT034297.1:CDS
CTAATCATGGTGAAGGGCGA+TGG 0.515282 6:-109834498 MsaT034297.1:CDS
CACATTGCTAATCATGGTGA+AGG 0.532252 6:-109834505 MsaT034297.1:CDS
TCTTCCTCTTCAAGAGTCCA+AGG 0.541368 6:+109834541 None:intergenic
ACTTGTTGCCCCACTTTGAG+TGG 0.541542 6:+109834254 None:intergenic
GTCATCTTTACCATTATGCA+TGG 0.541953 6:+109834582 None:intergenic
ATGAACTTAGAAGGGAACCT+TGG 0.552788 6:-109834558 MsaT034297.1:CDS
TTTAAACTCCACTCAAAGTG+GGG 0.603637 6:-109834262 MsaT034297.1:CDS
AGATGACTATGAACTTAGAA+GGG 0.614691 6:-109834566 MsaT034297.1:CDS
GGAACCTTGGACTCTTGAAG+AGG 0.641233 6:-109834545 MsaT034297.1:CDS
ACATTGCTAATCATGGTGAA+GGG 0.649010 6:-109834504 MsaT034297.1:CDS
GATTAGCAATGTGTTTGATG+AGG 0.678454 6:+109834515 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr6 gene 109834237 109834602 109834237 ID=MsaG034297
Chr6 mRNA 109834237 109834602 109834237 ID=MsaT034297.1;Parent=MsaG034297
Chr6 exon 109834237 109834385 109834237 ID=MsaT034297.1.exon2;Parent=MsaT034297.1
Chr6 CDS 109834237 109834385 109834237 ID=cds.MsaT034297.1;Parent=MsaT034297.1
Chr6 exon 109834476 109834602 109834476 ID=MsaT034297.1.exon1;Parent=MsaT034297.1
Chr6 CDS 109834476 109834602 109834476 ID=cds.MsaT034297.1;Parent=MsaT034297.1
Gene Sequence

>MsaT034297.1

ATGCATAATGGTAAAGATGACTATGAACTTAGAAGGGAACCTTGGACTCTTGAAGAGGAAGATCTCCTCATCAAACACATTGCTAATCATGGTGAAGGGCGATGGAATTTCTTGGCTATGAGTTCAGGATTAAGGAGGACAGGAAAGAGCTGTAGAATAAGATTGCTAAACTACTTAAAGCCTGACATAAACAGAGAAAACTTAACCTCAGAAGAAAAGTTTTTGATTTTTAAACTCCACTCAAAGTGGGGCAACAAGTACATAACTCAGTCTTAG
Protein sequence

>MsaT034297.1

MHNGKDDYELRREPWTLEEEDLLIKHIANHGEGRWNFLAMSSGLRRTGKSCRIRLLNYLKPDINRENLTSEEKFLIFKLHSKWGNKYITQS*