AlfalfaGEDB | MsaG034300

M. sativa ssp. caerulea / MsaG034300

KEGG: K09422
GO: GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034300	QSD99671.1	82.759	87	15	0	1	87	1	87	6.29e-44	154

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034300	sp\|E0CJS3\|EOBII_PETHY	64.198	81	29	0	7	87	10	90	1.05e-34	120

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034300	tr\|A0A896W408\|A0A896W408_MELAB	82.759	87	15	0	1	87	1	87	3.01e-44	154

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TFs/TRs:

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Gene ID	Type	Classification
MsaG034300	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000479	MsaG034300	0.862876	7.365653e-64	6.396909e-61
MsaG000583	MsaG034300	0.812613	6.675679e-51	1.215507e-48
MsaG000842	MsaG034300	0.832575	1.582301e-55	4.933085e-53
MsaG001553	MsaG034300	0.833120	1.159814e-55	3.674431e-53
MsaG001683	MsaG034300	0.802312	1.000284e-48	1.425204e-46
MsaG001772	MsaG034300	0.821012	8.889110e-53	2.008176e-50
MsaG002209	MsaG034300	0.819305	2.177684e-52	4.702580e-50
MsaG002530	MsaG034300	0.805573	2.115500e-49	3.250161e-47
MsaG002731	MsaG034300	0.832688	1.483241e-55	4.639559e-53
MsaG002852	MsaG034300	0.836046	2.150256e-56	7.431766e-54

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034300	MtrunA17_Chr1g0209661	70.588	85	25	3	87	20	104	2.16e-38	129
MsaG034300	MtrunA17_Chr6g0450101	61.176	85	33	3	87	7	91	1.94e-35	119
MsaG034300	MtrunA17_Chr7g0228231	62.963	81	30	7	87	11	91	6.67e-35	118
MsaG034300	MtrunA17_Chr1g0194291	58.974	78	32	10	87	21	98	1.17e-30	108
MsaG034300	MtrunA17_Chr4g0068921	59.770	87	35	1	87	15	101	3.38e-30	105
MsaG034300	MtrunA17_Chr2g0293911	62.069	87	33	1	87	15	101	1.50e-29	107
MsaG034300	MtrunA17_Chr1g0194301	50.602	83	41	5	87	28	110	2.06e-27	100
MsaG034300	MtrunA17_Chr1g0186061	51.899	79	38	11	89	21	99	6.30e-27	99.0
MsaG034300	MtrunA17_Chr1g0168661	53.165	79	37	11	89	22	100	6.56e-27	99.0
MsaG034300	MtrunA17_Chr8g0346561	52.564	78	37	10	87	12	89	5.12e-23	89.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034300	AT5G40350.1	62.963	81	30	0	7	87	14	94	9.96e-35	118
MsaG034300	AT3G27810.1	62.025	79	30	0	9	87	19	97	4.62e-34	117
MsaG034300	AT1G68320.1	66.667	81	27	0	7	87	16	96	1.32e-33	117
MsaG034300	AT1G25340.1	67.089	79	26	0	9	87	17	95	3.07e-33	116
MsaG034300	AT1G48000.1	59.494	79	32	0	9	87	31	109	1.28e-30	108
MsaG034300	AT2G47190.1	54.217	83	38	0	5	87	15	97	3.38e-30	108
MsaG034300	AT3G01530.1	57.692	78	33	0	10	87	25	102	1.05e-29	105
MsaG034300	AT1G25340.2	63.291	79	24	1	9	87	17	90	3.47e-28	102
MsaG034300	AT1G25340.3	63.291	79	24	1	9	87	17	90	5.70e-28	103
MsaG034300	AT3G30210.1	52.500	80	38	0	10	89	27	106	4.67e-27	100

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Find 17 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGATGACTATGAACTTAGA+AGG	0.363354	6:-109865851	MsaT034300.1:CDS
AATTTCTTGGCTATGAGTTC+AGG	0.367797	6:-109865759	MsaT034300.1:intron
ACATTGCTAATCATGGTGAA+GGG	0.649010	6:-109865788	MsaT034300.1:CDS
ACTTGTTGCCCCACTTTGAG+TGG	0.541542	6:+109865538	None:intergenic
AGATGACTATGAACTTAGAA+GGG	0.614691	6:-109865850	MsaT034300.1:CDS
ATCAAACACATTGCTAATCA+TGG	0.478221	6:-109865795	MsaT034300.1:CDS
ATGAACTTAGAAGGGAACCT+TGG	0.552788	6:-109865842	MsaT034300.1:CDS
CACATTGCTAATCATGGTGA+AGG	0.532252	6:-109865789	MsaT034300.1:CDS
CTAATCATGGTGAAGGGCGA+TGG	0.515282	6:-109865782	MsaT034300.1:CDS
GAGAAGGTTGCCATGCATAA+TGG	0.446643	6:-109865876	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	109865521	109865886	109865521	ID=MsaG034300
Chr6	mRNA	109865521	109865886	109865521	ID=MsaT034300.1;Parent=MsaG034300
Chr6	exon	109865521	109865669	109865521	ID=MsaT034300.1.exon2;Parent=MsaT034300.1
Chr6	CDS	109865521	109865669	109865521	ID=cds.MsaT034300.1;Parent=MsaT034300.1
Chr6	exon	109865760	109865886	109865760	ID=MsaT034300.1.exon1;Parent=MsaT034300.1
Chr6	CDS	109865760	109865886	109865760	ID=cds.MsaT034300.1;Parent=MsaT034300.1

Gene Sequence	>MsaT034300.1 ATGCATAATGGTAAAGATGACTATGAACTTAGAAGGGAACCTTGGACTCTTGAAGAGGAAGATCTCCTCATCAAACACATTGCTAATCATGGTGAAGGGCGATGGAATTTCTTGGCTATGAGTTCAGGATTAAGGAGGACAGGAAAGAGCTGTAGAATAAGATTGCTAAACTACTTAAAGCCTGACATAAACAGAGAAAACTTAACCTCAGAAGAAAAGTTTTTGATTTTTGAACTCCACTCAAAGTGGGGCAACAAGTACATAACTCAGTCTTAG
Protein sequence	>MsaT034300.1 MHNGKDDYELRREPWTLEEEDLLIKHIANHGEGRWNFLAMSSGLRRTGKSCRIRLLNYLKPDINRENLTSEEKFLIFELHSKWGNKYITQS*