AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG034300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG034300 MtrunA17_Chr1g0209661 70.588 85 25 0 3 87 20 104 2.16e-38 129
MsaG034300 MtrunA17_Chr6g0450101 61.176 85 33 0 3 87 7 91 1.94e-35 119
MsaG034300 MtrunA17_Chr7g0228231 62.963 81 30 0 7 87 11 91 6.67e-35 118
MsaG034300 MtrunA17_Chr1g0194291 58.974 78 32 0 10 87 21 98 1.17e-30 108
MsaG034300 MtrunA17_Chr4g0068921 59.770 87 35 0 1 87 15 101 3.38e-30 105
MsaG034300 MtrunA17_Chr2g0293911 62.069 87 33 0 1 87 15 101 1.50e-29 107
MsaG034300 MtrunA17_Chr1g0194301 50.602 83 41 0 5 87 28 110 2.06e-27 100
MsaG034300 MtrunA17_Chr1g0186061 51.899 79 38 0 11 89 21 99 6.30e-27 99.0
MsaG034300 MtrunA17_Chr1g0168661 53.165 79 37 0 11 89 22 100 6.56e-27 99.0
MsaG034300 MtrunA17_Chr8g0346561 52.564 78 37 0 10 87 12 89 5.12e-23 89.4
MsaG034300 MtrunA17_Chr5g0395221 51.190 84 39 1 3 86 7 88 7.38e-23 84.0
MsaG034300 MtrunA17_Chr7g0275911 53.846 78 36 0 10 87 12 89 7.70e-23 88.2
MsaG034300 MtrunA17_Chr2g0327821 48.101 79 41 0 9 87 5 83 2.81e-22 86.3
MsaG034300 MtrunA17_Chr4g0039971 48.780 82 42 0 6 87 9 90 5.10e-22 87.4
MsaG034300 MtrunA17_Chr3g0099141 42.683 82 47 0 6 87 36 117 5.12e-22 83.6
MsaG034300 MtrunA17_Chr3g0115821 48.780 82 42 0 6 87 8 89 5.52e-22 87.4
MsaG034300 MtrunA17_Chr4g0070641 51.282 78 38 0 10 87 12 89 8.37e-22 83.6
MsaG034300 MtrunA17_Chr1g0187761 50.000 78 39 0 10 87 12 89 1.13e-21 85.1
MsaG034300 MtrunA17_Chr1g0167691 48.718 78 40 0 10 87 12 89 1.40e-21 85.1
MsaG034300 MtrunA17_Chr5g0395281 48.780 82 42 0 6 87 8 89 1.54e-21 85.5
MsaG034300 MtrunA17_Chr4g0037141 56.164 73 32 0 15 87 17 89 1.72e-21 85.1
MsaG034300 MtrunA17_Chr7g0261281 50.000 80 40 0 10 89 12 91 1.89e-21 85.1
MsaG034300 MtrunA17_Chr5g0410961 48.780 82 42 0 6 87 8 89 2.07e-21 85.9
MsaG034300 MtrunA17_Chr7g0274581 47.436 78 41 0 10 87 12 89 2.09e-21 83.6
MsaG034300 MtrunA17_Chr8g0342531 42.529 87 50 0 2 88 4 90 5.27e-21 81.6
MsaG034300 MtrunA17_Chr1g0154031 46.154 78 42 0 10 87 76 153 6.09e-21 85.1
MsaG034300 MtrunA17_Chr8g0354661 46.154 78 42 0 10 87 37 114 6.89e-21 85.1
MsaG034300 MtrunA17_Chr8g0342511 42.857 84 48 0 2 85 4 87 7.47e-21 79.3
MsaG034300 MtrunA17_Chr4g0048511 51.282 78 38 0 10 87 13 90 1.08e-20 84.0
MsaG034300 MtrunA17_Chr4g0070611 51.282 78 38 0 10 87 12 89 1.09e-20 83.6
MsaG034300 MtrunA17_Chr3g0099131 44.872 78 43 0 10 87 41 118 1.27e-20 84.3
MsaG034300 MtrunA17_Chr8g0385321 50.685 73 36 0 15 87 17 89 1.58e-20 83.2
MsaG034300 MtrunA17_Chr8g0343831 45.570 79 43 0 9 87 7 85 1.79e-20 82.0
MsaG034300 MtrunA17_Chr2g0323411 48.780 82 42 0 6 87 8 89 1.94e-20 82.8
MsaG034300 MtrunA17_Chr2g0281071 50.000 78 39 0 10 87 13 90 2.39e-20 82.8
MsaG034300 MtrunA17_Chr3g0080861 43.590 78 44 0 10 87 37 114 4.33e-20 82.8
MsaG034300 MtrunA17_Chr4g0030881 45.238 84 39 1 11 87 8 91 4.36e-20 81.3
MsaG034300 MtrunA17_Chr2g0323321 45.122 82 45 0 6 87 7 88 4.47e-20 77.8
MsaG034300 MtrunA17_Chr1g0180391 45.977 87 43 1 1 87 14 96 5.77e-20 80.1
MsaG034300 MtrunA17_Chr3g0121241 46.154 78 42 0 10 87 42 119 7.25e-20 81.3
MsaG034300 MtrunA17_Chr4g0042611 43.210 81 46 0 6 86 8 88 8.23e-20 76.3
MsaG034300 MtrunA17_Chr3g0131121 53.425 73 34 0 15 87 17 89 9.64e-20 80.9
MsaG034300 MtrunA17_Chr7g0270891 45.570 79 43 0 9 87 11 89 1.45e-19 80.9
MsaG034300 MtrunA17_Chr1g0167661 44.872 78 43 0 10 87 12 89 1.58e-19 79.3
MsaG034300 MtrunA17_Chr2g0294811 44.156 77 43 0 10 86 12 88 2.09e-19 76.3
MsaG034300 MtrunA17_Chr1g0203411 44.872 78 43 0 10 87 12 89 2.42e-19 79.7
MsaG034300 MtrunA17_Chr6g0453471 43.902 82 46 0 6 87 8 89 3.06e-19 80.1
MsaG034300 MtrunA17_Chr5g0397231 43.023 86 49 0 2 87 4 89 3.40e-19 79.7
MsaG034300 MtrunA17_Chr1g0193801 44.304 79 44 0 9 87 11 89 3.42e-19 80.1
MsaG034300 MtrunA17_Chr8g0342461 42.045 88 50 1 2 88 4 91 3.73e-19 76.3
MsaG034300 MtrunA17_Chr5g0417821 46.250 80 43 0 10 89 7 86 4.21e-19 79.0
MsaG034300 MtrunA17_Chr1g0194951 44.872 78 43 0 10 87 12 89 4.64e-19 79.7
MsaG034300 MtrunA17_Chr8g0387421 43.023 86 49 0 2 87 4 89 4.74e-19 79.0
MsaG034300 MtrunA17_Chr4g0068061 44.872 78 43 0 10 87 12 89 5.21e-19 79.3
MsaG034300 MtrunA17_Chr2g0330041 40.698 86 51 0 2 87 4 89 5.94e-19 79.3
MsaG034300 MtrunA17_Chr4g0022881 46.753 77 41 0 11 87 13 89 6.87e-19 77.4
MsaG034300 MtrunA17_Chr8g0342471 42.045 88 50 1 2 88 4 91 8.40e-19 75.1
MsaG034300 MtrunA17_Chr7g0217741 44.872 78 43 0 10 87 12 89 9.15e-19 78.2
MsaG034300 MtrunA17_Chr1g0151941 43.373 83 46 1 6 87 8 90 9.16e-19 77.4
MsaG034300 MtrunA17_Chr4g0055981 44.706 85 47 0 3 87 48 132 9.38e-19 77.0
MsaG034300 MtrunA17_Chr6g0452271 41.463 82 48 0 6 87 8 89 1.24e-18 78.2
MsaG034300 MtrunA17_Chr8g0342541 40.698 86 51 0 2 87 4 89 1.91e-18 77.8
MsaG034300 MtrunA17_Chr8g0349261 45.679 81 43 1 10 89 13 93 2.05e-18 77.0
MsaG034300 MtrunA17_Chr1g0193371 43.038 79 45 0 9 87 11 89 2.67e-18 77.4
MsaG034300 MtrunA17_Chr5g0435101 42.683 82 47 0 6 87 7 88 2.89e-18 75.5
MsaG034300 MtrunA17_Chr4g0022901 46.250 80 43 0 10 89 13 92 3.08e-18 76.3
MsaG034300 MtrunA17_Chr4g0057031 42.683 82 47 0 6 87 8 89 3.11e-18 76.3
MsaG034300 MtrunA17_Chr8g0360111 46.154 78 42 0 10 87 25 102 3.31e-18 76.3
MsaG034300 MtrunA17_Chr4g0042671 44.872 78 43 0 10 87 12 89 3.55e-18 77.4
MsaG034300 MtrunA17_Chr2g0309911 39.535 86 52 0 2 87 3 88 4.24e-18 76.6
MsaG034300 MtrunA17_Chr4g0022911 46.250 80 43 0 10 89 13 92 5.36e-18 75.9
MsaG034300 MtrunA17_Chr5g0434831 44.872 78 43 0 10 87 7 84 6.05e-18 74.3
MsaG034300 MtrunA17_Chr4g0044421 46.575 73 39 0 15 87 17 89 6.70e-18 73.9
MsaG034300 MtrunA17_Chr7g0254411 42.308 78 45 0 10 87 12 89 7.63e-18 75.9
MsaG034300 MtrunA17_Chr6g0453211 40.244 82 49 0 6 87 8 89 8.25e-18 75.9
MsaG034300 MtrunA17_Chr7g0217221 39.286 84 51 0 6 89 8 91 9.85e-18 75.1
MsaG034300 MtrunA17_Chr5g0434841 47.436 78 41 0 10 87 20 97 1.01e-17 75.5
MsaG034300 MtrunA17_Chr4g0022931 45.000 80 44 0 10 89 13 92 1.39e-17 74.7
MsaG034300 MtrunA17_Chr7g0228891 42.683 82 47 0 6 87 8 89 1.88e-17 74.3
MsaG034300 MtrunA17_Chr5g0434911 43.590 78 44 0 10 87 21 98 2.18e-17 74.3
MsaG034300 MtrunA17_Chr2g0311221 42.683 82 47 0 6 87 10 91 2.33e-17 74.7
MsaG034300 MtrunA17_Chr2g0323351 45.122 82 45 0 10 91 12 93 2.65e-17 73.6
MsaG034300 MtrunA17_Chr4g0060721 40.000 80 48 0 10 89 13 92 2.97e-17 74.3
MsaG034300 MtrunA17_Chr2g0322521 44.828 87 44 1 5 87 20 106 2.98e-17 74.7
MsaG034300 MtrunA17_Chr3g0088461 40.506 79 47 0 9 87 21 99 3.73e-17 74.3
MsaG034300 MtrunA17_Chr8g0342521 39.535 86 52 0 2 87 4 89 3.83e-17 74.3
MsaG034300 MtrunA17_Chr1g0192411 41.176 85 50 0 3 87 5 89 4.33e-17 74.3
MsaG034300 MtrunA17_Chr7g0240821 47.945 73 38 0 15 87 6 78 4.57e-17 72.8
MsaG034300 MtrunA17_Chr8g0334881 38.636 88 53 1 1 87 1 88 4.79e-17 73.6
MsaG034300 MtrunA17_Chr7g0271241 41.772 79 46 0 9 87 11 89 5.13e-17 73.9
MsaG034300 MtrunA17_Chr7g0220341 42.500 80 44 1 10 87 25 104 7.29e-17 72.8
MsaG034300 MtrunA17_Chr2g0328771 41.026 78 46 0 10 87 20 97 8.04e-17 73.2
MsaG034300 MtrunA17_Chr4g0032401 41.772 79 46 0 9 87 16 94 8.15e-17 73.2
MsaG034300 MtrunA17_Chr3g0092401 39.744 78 47 0 10 87 13 90 1.07e-16 72.8
MsaG034300 MtrunA17_Chr5g0434931 42.308 78 45 0 10 87 35 112 1.31e-16 72.0
MsaG034300 MtrunA17_Chr4g0058631 41.772 79 46 0 9 87 11 89 1.32e-16 72.8
MsaG034300 MtrunA17_Chr3g0103281 41.026 78 46 0 10 87 12 89 1.86e-16 72.0
MsaG034300 MtrunA17_Chr1g0211161 39.535 86 52 0 2 87 5 90 1.91e-16 70.9
MsaG034300 MtrunA17_Chr4g0022891 43.590 78 44 0 10 87 12 89 3.05e-16 70.5
MsaG034300 MtrunA17_Chr3g0110351 40.244 82 49 0 6 87 8 89 3.56e-16 71.2
MsaG034300 MtrunA17_Chr5g0434571 40.244 82 49 0 6 87 44 125 6.57e-16 70.9
MsaG034300 MtrunA17_Chr5g0425591 35.526 76 49 0 9 84 8 83 7.05e-16 66.6
MsaG034300 MtrunA17_Chr7g0228991 42.308 78 45 0 10 87 29 106 1.21e-15 69.3
MsaG034300 MtrunA17_Chr6g0487491 41.379 87 50 1 6 91 8 94 1.44e-15 68.9
MsaG034300 MtrunA17_Chr8g0342481 39.080 87 52 1 2 87 4 90 1.71e-15 69.7
MsaG034300 MtrunA17_Chr5g0440781 36.842 76 48 0 9 84 11 86 2.86e-15 67.0
MsaG034300 MtrunA17_Chr3g0117091 40.506 79 47 0 9 87 11 89 3.63e-15 68.6
MsaG034300 MtrunA17_Chr3g0135311 40.964 83 48 1 6 87 8 90 4.53e-15 68.6
MsaG034300 MtrunA17_Chr7g0269831 42.308 78 45 0 10 87 12 89 8.37e-15 67.8
MsaG034300 MtrunA17_Chr1g0203441 40.260 77 46 0 11 87 14 90 9.11e-15 67.0
MsaG034300 MtrunA17_Chr5g0440761 40.000 70 42 0 15 84 17 86 1.05e-14 67.0
MsaG034300 MtrunA17_Chr2g0327351 39.759 83 49 1 6 87 8 90 1.08e-14 67.4
MsaG034300 MtrunA17_Chr5g0441141 36.842 76 48 0 9 84 11 86 1.19e-14 66.6
MsaG034300 MtrunA17_Chr4g0028311 39.759 83 49 1 6 87 8 90 1.92e-14 66.6
MsaG034300 MtrunA17_Chr6g0470971 40.260 77 46 0 11 87 15 91 2.40e-14 65.9
MsaG034300 MtrunA17_Chr4g0054391 38.554 83 50 1 6 87 8 90 8.23e-14 64.7
MsaG034300 MtrunA17_Chr4g0013361 36.709 79 49 1 10 87 10 88 8.90e-14 64.7
MsaG034300 MtrunA17_Chr6g0453751 34.066 91 52 1 2 84 12 102 1.34e-13 61.6
MsaG034300 MtrunA17_Chr4g0072751 38.554 83 50 1 6 87 8 90 3.39e-13 63.2
MsaG034300 MtrunA17_Chr1g0152011 37.349 83 51 1 6 87 8 90 3.93e-13 63.2
MsaG034300 MtrunA17_Chr1g0157731 37.975 79 48 1 9 87 88 165 7.39e-13 62.4
MsaG034300 MtrunA17_Chr5g0400821 37.349 83 51 1 6 87 8 90 8.65e-13 62.0
MsaG034300 MtrunA17_Chr5g0401731 38.158 76 46 1 14 89 17 91 9.10e-13 62.0
MsaG034300 MtrunA17_Chr7g0264641 37.349 83 51 1 6 87 8 90 1.56e-12 60.8
MsaG034300 MtrunA17_Chr6g0460661 43.836 73 40 1 15 87 19 90 1.71e-12 59.3
MsaG034300 MtrunA17_Chr6g0454921 35.632 87 55 1 3 89 6 91 1.87e-12 60.1
MsaG034300 MtrunA17_Chr7g0238631 40.000 80 45 2 9 87 110 187 7.80e-12 59.3
MsaG034300 MtrunA17_Chr7g0238651 39.744 78 45 1 12 87 7 84 2.52e-11 57.8
MsaG034300 MtrunA17_Chr5g0441131 30.263 76 53 0 9 84 8 83 4.84e-11 55.8
MsaG034300 MtrunA17_Chr3g0139671 34.177 79 51 1 9 87 82 159 4.87e-11 57.4
MsaG034300 MtrunA17_Chr4g0053431 34.211 76 49 1 14 89 7 81 6.77e-11 56.6
MsaG034300 MtrunA17_Chr4g0008551 36.486 74 46 1 14 87 40 112 9.74e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG034300 AT5G40350.1 62.963 81 30 0 7 87 14 94 9.96e-35 118
MsaG034300 AT3G27810.1 62.025 79 30 0 9 87 19 97 4.62e-34 117
MsaG034300 AT1G68320.1 66.667 81 27 0 7 87 16 96 1.32e-33 117
MsaG034300 AT1G25340.1 67.089 79 26 0 9 87 17 95 3.07e-33 116
MsaG034300 AT1G48000.1 59.494 79 32 0 9 87 31 109 1.28e-30 108
MsaG034300 AT2G47190.1 54.217 83 38 0 5 87 15 97 3.38e-30 108
MsaG034300 AT3G01530.1 57.692 78 33 0 10 87 25 102 1.05e-29 105
MsaG034300 AT1G25340.2 63.291 79 24 1 9 87 17 90 3.47e-28 102
MsaG034300 AT1G25340.3 63.291 79 24 1 9 87 17 90 5.70e-28 103
MsaG034300 AT3G30210.1 52.500 80 38 0 10 89 27 106 4.67e-27 100
MsaG034300 AT3G24310.1 54.430 79 36 0 11 89 19 97 7.77e-27 99.4
MsaG034300 AT4G13480.1 53.165 79 37 0 11 89 7 85 1.42e-26 98.6
MsaG034300 AT3G06490.1 56.977 86 37 0 2 87 11 96 1.44e-25 97.1
MsaG034300 AT5G49620.1 57.831 83 35 0 5 87 21 103 2.07e-25 96.3
MsaG034300 AT5G49620.2 59.259 81 33 0 5 85 21 101 8.61e-25 94.7
MsaG034300 AT5G16770.4 53.659 82 38 0 6 87 8 89 1.10e-23 92.0
MsaG034300 AT5G16770.3 53.659 82 38 0 6 87 8 89 1.10e-23 92.0
MsaG034300 AT5G16770.1 53.659 82 38 0 6 87 8 89 1.43e-23 92.0
MsaG034300 AT5G16770.2 53.659 82 38 0 6 87 8 89 1.43e-23 92.0
MsaG034300 AT3G53200.1 50.602 83 41 0 5 87 4 86 2.00e-23 89.7
MsaG034300 AT5G59780.3 49.367 79 40 0 9 87 7 85 3.22e-23 89.4
MsaG034300 AT3G02940.2 52.439 82 39 0 6 87 8 89 4.27e-23 90.1
MsaG034300 AT3G02940.1 52.439 82 39 0 6 87 8 89 4.86e-23 90.1
MsaG034300 AT3G02940.3 52.439 82 39 0 6 87 8 89 4.86e-23 90.1
MsaG034300 AT3G46130.1 49.351 77 39 0 11 87 10 86 1.79e-22 87.8
MsaG034300 AT3G27920.1 43.373 83 47 0 5 87 9 91 2.11e-22 87.0
MsaG034300 AT5G40330.1 44.444 81 45 0 7 87 9 89 2.22e-22 86.7
MsaG034300 AT4G34990.1 57.534 73 31 0 15 87 17 89 5.71e-22 86.7
MsaG034300 AT3G23250.1 51.282 78 38 0 10 87 12 89 7.07e-22 86.7
MsaG034300 AT1G22640.1 51.282 78 38 0 10 87 12 89 8.24e-22 85.9
MsaG034300 AT3G13540.1 47.436 78 41 0 10 87 23 100 2.06e-21 84.7
MsaG034300 AT1G35515.1 51.282 78 38 0 10 87 12 89 2.63e-21 83.6
MsaG034300 AT4G09460.1 53.425 73 34 0 15 87 17 89 3.08e-21 84.0
MsaG034300 AT3G61250.1 45.122 82 45 0 6 87 8 89 5.99e-21 84.3
MsaG034300 AT5G14750.1 44.304 79 44 0 9 87 15 93 7.12e-21 82.4
MsaG034300 AT4G38620.1 53.425 73 34 0 15 87 17 89 1.38e-20 83.2
MsaG034300 AT2G16720.1 48.718 78 40 0 10 87 12 89 2.75e-20 82.0
MsaG034300 AT1G09540.1 46.835 79 42 0 9 87 11 89 4.02e-20 82.8
MsaG034300 AT5G61420.2 48.718 78 40 0 10 87 12 89 8.01e-20 82.0
MsaG034300 AT4G28110.1 47.561 82 43 0 6 87 8 89 8.14e-20 81.3
MsaG034300 AT5G06100.5 42.683 82 47 0 6 87 28 109 1.00e-19 82.4
MsaG034300 AT5G06100.2 42.683 82 47 0 6 87 28 109 1.00e-19 82.4
MsaG034300 AT5G06100.3 42.683 82 47 0 6 87 28 109 1.00e-19 82.4
MsaG034300 AT5G06100.4 42.683 82 47 0 6 87 28 109 1.00e-19 82.4
MsaG034300 AT5G49330.1 48.718 78 40 0 10 87 12 89 1.02e-19 81.6
MsaG034300 AT5G06100.1 42.683 82 47 0 6 87 28 109 1.09e-19 82.0
MsaG034300 AT4G05100.1 50.000 78 39 0 10 87 13 90 1.10e-19 81.3
MsaG034300 AT5G35550.1 48.101 79 41 0 9 87 13 91 1.17e-19 80.1
MsaG034300 AT4G21440.1 48.718 78 40 0 10 87 12 89 1.21e-19 81.3
MsaG034300 AT3G01140.2 45.122 82 45 0 6 87 8 89 1.24e-19 81.3
MsaG034300 AT5G07690.1 48.718 78 40 0 10 87 12 89 1.32e-19 81.3
MsaG034300 AT3G11440.3 43.590 78 44 0 10 87 41 118 1.37e-19 82.0
MsaG034300 AT3G11440.4 43.590 78 44 0 10 87 41 118 1.37e-19 82.0
MsaG034300 AT3G11440.1 43.590 78 44 0 10 87 41 118 1.37e-19 82.0
MsaG034300 AT5G10280.1 44.048 84 47 0 6 89 8 91 1.39e-19 81.3
MsaG034300 AT5G65230.1 45.238 84 46 0 4 87 6 89 1.70e-19 80.5
MsaG034300 AT3G01140.1 45.122 82 45 0 6 87 51 132 1.78e-19 81.3
MsaG034300 AT2G47460.1 46.154 78 42 0 10 87 12 89 1.80e-19 81.3
MsaG034300 AT5G07700.1 48.718 78 40 0 10 87 12 89 1.90e-19 80.9
MsaG034300 AT5G07700.2 48.718 78 40 0 10 87 12 89 1.90e-19 80.9
MsaG034300 AT2G32460.1 43.590 78 44 0 10 87 18 95 1.92e-19 81.6
MsaG034300 AT2G32460.2 43.590 78 44 0 10 87 6 83 2.01e-19 81.3
MsaG034300 AT3G11440.2 43.590 78 44 0 10 87 41 118 2.25e-19 81.3
MsaG034300 AT5G54230.1 44.872 78 43 0 10 87 12 89 2.40e-19 80.5
MsaG034300 AT1G57560.2 45.570 79 43 0 9 87 11 89 2.71e-19 79.7
MsaG034300 AT1G79180.1 47.561 82 43 0 6 87 10 91 2.83e-19 79.7
MsaG034300 AT1G57560.1 45.570 79 43 0 9 87 11 89 4.32e-19 79.7
MsaG034300 AT1G34670.1 47.561 82 43 0 6 87 8 89 4.62e-19 80.1
MsaG034300 AT2G31180.1 46.154 78 42 0 10 87 12 89 5.17e-19 78.6
MsaG034300 AT5G55020.1 41.026 78 46 0 10 87 26 103 8.53e-19 79.7
MsaG034300 AT5G15310.4 43.902 82 46 0 6 87 8 89 1.05e-18 77.4
MsaG034300 AT1G06180.1 46.154 78 42 0 10 87 12 89 1.20e-18 77.4
MsaG034300 AT2G26960.1 41.860 86 46 1 6 87 12 97 1.36e-18 79.0
MsaG034300 AT3G13890.2 40.698 86 51 0 2 87 4 89 1.73e-18 78.2
MsaG034300 AT4G26930.1 42.308 78 45 0 10 87 19 96 1.79e-18 78.6
MsaG034300 AT4G01680.3 41.772 79 46 0 9 87 11 89 1.84e-18 77.0
MsaG034300 AT3G62610.1 45.000 80 44 0 10 89 12 91 2.17e-18 77.8
MsaG034300 AT5G26660.1 43.038 79 45 0 9 87 11 89 2.26e-18 77.8
MsaG034300 AT1G63910.1 41.860 86 50 0 2 87 4 89 2.45e-18 77.8
MsaG034300 AT3G08500.1 43.038 79 45 0 9 87 29 107 2.53e-18 77.8
MsaG034300 AT5G15310.2 43.902 82 46 0 6 87 8 89 2.57e-18 77.4
MsaG034300 AT5G15310.1 43.902 82 46 0 6 87 8 89 2.65e-18 77.4
MsaG034300 AT1G74080.1 46.154 78 42 0 10 87 12 89 3.30e-18 77.4
MsaG034300 AT5G14340.1 45.122 82 45 0 6 87 20 101 4.59e-18 76.3
MsaG034300 AT4G22680.1 43.902 82 46 0 6 87 8 89 5.51e-18 75.9
MsaG034300 AT1G08810.1 40.476 84 50 0 6 89 8 91 5.69e-18 76.3
MsaG034300 AT5G60890.1 46.154 78 42 0 10 87 12 89 5.96e-18 76.3
MsaG034300 AT3G47600.1 41.463 82 48 0 6 87 8 89 6.32e-18 76.6
MsaG034300 AT4G01680.1 41.772 79 46 0 9 87 11 89 6.65e-18 76.6
MsaG034300 AT1G74650.1 41.772 79 46 0 9 87 11 89 8.22e-18 76.3
MsaG034300 AT1G16490.1 42.683 82 47 0 6 87 10 91 8.55e-18 75.5
MsaG034300 AT1G66370.1 45.238 84 46 0 4 87 2 85 8.79e-18 75.1
MsaG034300 AT1G18570.1 44.578 83 46 0 5 87 8 90 1.10e-17 76.3
MsaG034300 AT3G27810.2 62.500 48 18 0 40 87 1 48 2.02e-17 72.8
MsaG034300 AT5G62470.2 42.308 78 45 0 10 87 12 89 3.69e-17 74.7
MsaG034300 AT3G28910.1 40.244 82 49 0 6 87 8 89 5.12e-17 73.9
MsaG034300 AT3G12720.1 38.750 80 49 0 8 87 20 99 6.28e-17 73.6
MsaG034300 AT5G40350.2 64.444 45 16 0 43 87 5 49 8.94e-17 70.9
MsaG034300 AT4G12350.1 42.683 82 47 0 6 87 8 89 9.15e-17 72.8
MsaG034300 AT4G17785.2 43.210 81 46 0 7 87 10 90 1.01e-16 73.6
MsaG034300 AT1G66380.2 47.436 78 41 0 10 87 8 85 1.03e-16 69.3
MsaG034300 AT1G56160.1 41.463 82 48 0 6 87 10 91 1.07e-16 72.8
MsaG034300 AT4G17785.1 43.210 81 46 0 7 87 10 90 1.08e-16 73.6
MsaG034300 AT3G12820.1 42.683 82 47 0 6 87 10 91 1.09e-16 72.0
MsaG034300 AT1G66230.1 42.683 82 47 0 6 87 8 89 1.27e-16 72.4
MsaG034300 AT1G74430.1 44.872 78 43 0 10 87 12 89 1.50e-16 72.4
MsaG034300 AT5G52600.1 41.026 78 46 0 10 87 12 89 1.56e-16 71.2
MsaG034300 AT5G12870.1 37.975 79 49 0 9 87 17 95 1.72e-16 72.0
MsaG034300 AT5G56110.1 39.744 78 47 0 10 87 12 89 2.99e-16 72.0
MsaG034300 AT3G28470.1 36.585 82 52 0 6 87 8 89 2.99e-16 72.0
MsaG034300 AT5G16600.1 42.683 82 47 0 6 87 8 89 4.18e-16 71.6
MsaG034300 AT3G48920.1 38.961 77 47 0 11 87 19 95 5.92e-16 70.5
MsaG034300 AT1G18710.1 41.463 82 48 0 10 91 12 93 7.69e-16 70.1
MsaG034300 AT3G13890.1 36.842 95 51 1 2 87 4 98 1.11e-15 70.5
MsaG034300 AT5G62320.1 39.326 89 47 1 6 87 9 97 1.35e-15 69.3
MsaG034300 AT1G66380.1 49.206 63 32 0 10 72 8 70 1.42e-15 67.4
MsaG034300 AT5G23000.1 39.759 83 49 1 6 87 8 90 4.16e-15 68.9
MsaG034300 AT3G60460.1 37.500 80 49 1 9 87 10 89 8.46e-15 67.8
MsaG034300 AT5G62470.1 41.026 78 45 1 10 87 12 88 9.54e-15 67.8
MsaG034300 AT2G36890.1 40.964 83 48 1 6 87 8 90 9.62e-15 67.8
MsaG034300 AT1G56650.1 50.794 63 31 0 10 72 8 70 1.00e-14 67.0
MsaG034300 AT4G01680.2 36.264 91 46 1 9 87 11 101 1.18e-14 67.8
MsaG034300 AT2G36890.2 40.964 83 48 1 6 87 49 131 1.32e-14 67.4
MsaG034300 AT4G25560.1 38.961 77 47 0 11 87 11 87 1.54e-14 67.0
MsaG034300 AT4G37780.1 37.349 83 51 1 6 87 8 90 2.28e-14 66.6
MsaG034300 AT1G66390.1 46.154 78 42 0 10 87 8 85 1.82e-13 63.5
MsaG034300 AT5G65790.1 39.759 83 49 1 6 87 8 90 2.14e-13 64.3
MsaG034300 AT3G46130.3 55.319 47 21 0 41 87 8 54 3.63e-13 62.8
MsaG034300 AT4G37260.1 35.632 87 55 1 5 91 6 91 3.73e-13 63.5
MsaG034300 AT2G23290.1 39.474 76 45 1 14 89 15 89 4.53e-13 63.2
MsaG034300 AT3G49690.1 38.554 83 50 1 6 87 8 90 5.18e-13 62.8
MsaG034300 AT1G79180.2 33.043 115 44 1 6 87 10 124 5.36e-13 62.8
MsaG034300 AT5G52260.1 40.260 77 46 0 11 87 13 89 1.65e-12 61.2
MsaG034300 AT5G59780.2 55.556 45 20 0 43 87 20 64 1.94e-12 60.5
MsaG034300 AT3G46130.4 55.556 45 20 0 43 87 20 64 2.27e-12 60.5
MsaG034300 AT3G09370.3 36.709 79 49 1 9 87 140 217 2.29e-12 61.2
MsaG034300 AT5G57620.1 37.349 83 51 1 6 87 8 90 2.70e-12 60.8
MsaG034300 AT3G09370.2 36.709 79 49 1 9 87 132 209 2.70e-12 61.2
MsaG034300 AT3G09370.1 36.709 79 49 1 9 87 127 204 2.78e-12 61.2
MsaG034300 AT3G53200.2 53.333 45 21 0 43 87 9 53 3.32e-12 59.7
MsaG034300 AT5G11510.5 38.750 80 46 2 9 87 78 155 1.19e-11 59.3
MsaG034300 AT5G11510.2 38.750 80 46 2 9 87 78 155 1.20e-11 59.3
MsaG034300 AT5G11510.3 38.750 80 46 2 9 87 78 155 1.36e-11 59.3
MsaG034300 AT5G11510.1 38.750 80 46 2 9 87 78 155 1.36e-11 59.3
MsaG034300 AT5G11510.4 38.750 80 46 2 9 87 78 155 1.36e-11 59.3
MsaG034300 AT5G11050.1 41.892 74 40 2 15 87 108 179 3.87e-11 57.8

Find 17 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATGACTATGAACTTAGA+AGG 0.363354 6:-109865851 MsaT034300.1:CDS
AATTTCTTGGCTATGAGTTC+AGG 0.367797 6:-109865759 MsaT034300.1:intron
TGAAGGGCGATGGAATTTCT+TGG 0.406645 6:-109865772 MsaT034300.1:CDS
GAGAAGGTTGCCATGCATAA+TGG 0.446643 6:-109865876 None:intergenic
GATTTAGGATTAAGGAGGAC+AGG 0.469432 6:-109865654 MsaT034300.1:intron
ATCAAACACATTGCTAATCA+TGG 0.478221 6:-109865795 MsaT034300.1:CDS
CTAATCATGGTGAAGGGCGA+TGG 0.515282 6:-109865782 MsaT034300.1:CDS
CACATTGCTAATCATGGTGA+AGG 0.532252 6:-109865789 MsaT034300.1:CDS
TCTTCCTCTTCAAGAGTCCA+AGG 0.541368 6:+109865825 None:intergenic
ACTTGTTGCCCCACTTTGAG+TGG 0.541542 6:+109865538 None:intergenic
GTCATCTTTACCATTATGCA+TGG 0.541953 6:+109865866 None:intergenic
ATGAACTTAGAAGGGAACCT+TGG 0.552788 6:-109865842 MsaT034300.1:CDS
AGATGACTATGAACTTAGAA+GGG 0.614691 6:-109865850 MsaT034300.1:CDS
TTTGAACTCCACTCAAAGTG+GGG 0.622630 6:-109865546 MsaT034300.1:CDS
GGAACCTTGGACTCTTGAAG+AGG 0.641233 6:-109865829 MsaT034300.1:CDS
ACATTGCTAATCATGGTGAA+GGG 0.649010 6:-109865788 MsaT034300.1:CDS
GATTAGCAATGTGTTTGATG+AGG 0.678454 6:+109865799 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr6 gene 109865521 109865886 109865521 ID=MsaG034300
Chr6 mRNA 109865521 109865886 109865521 ID=MsaT034300.1;Parent=MsaG034300
Chr6 exon 109865521 109865669 109865521 ID=MsaT034300.1.exon2;Parent=MsaT034300.1
Chr6 CDS 109865521 109865669 109865521 ID=cds.MsaT034300.1;Parent=MsaT034300.1
Chr6 exon 109865760 109865886 109865760 ID=MsaT034300.1.exon1;Parent=MsaT034300.1
Chr6 CDS 109865760 109865886 109865760 ID=cds.MsaT034300.1;Parent=MsaT034300.1
Gene Sequence

>MsaT034300.1

ATGCATAATGGTAAAGATGACTATGAACTTAGAAGGGAACCTTGGACTCTTGAAGAGGAAGATCTCCTCATCAAACACATTGCTAATCATGGTGAAGGGCGATGGAATTTCTTGGCTATGAGTTCAGGATTAAGGAGGACAGGAAAGAGCTGTAGAATAAGATTGCTAAACTACTTAAAGCCTGACATAAACAGAGAAAACTTAACCTCAGAAGAAAAGTTTTTGATTTTTGAACTCCACTCAAAGTGGGGCAACAAGTACATAACTCAGTCTTAG
Protein sequence

>MsaT034300.1

MHNGKDDYELRREPWTLEEEDLLIKHIANHGEGRWNFLAMSSGLRRTGKSCRIRLLNYLKPDINRENLTSEEKFLIFELHSKWGNKYITQS*