AlfalfaGEDB | MsaG034318

M. sativa ssp. caerulea / MsaG034318

KEGG: -
GO: GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0048316 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0048859 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090421 GO:0090691 GO:0090709 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:1905428 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034318	QDX01722.1	98.201	278	4	1	10	287	52	328	0.0	568

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034318	sp\|Q9FLJ2\|NC100_ARATH	76.852	108	21	2	12	115	65	172	1.20e-53	180

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034318	tr\|A0A6B7JHB1\|A0A6B7JHB1_MEDSF	98.201	278	4	1	10	287	52	328	0.0	568

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TFs/TRs:

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Gene ID	Type	Classification
MsaG034318	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034318	MtrunA17_Chr6g0484441	95.324	278	9	1	10	287	52	325	0.0	552
MsaG034318	MtrunA17_Chr4g0060931	65.333	150	39	3	11	156	65	205	3.37e-59	192
MsaG034318	MtrunA17_Chr3g0091921	54.497	189	74	5	11	188	64	251	9.74e-58	187
MsaG034318	MtrunA17_Chr3g0139331	69.600	125	26	2	10	132	58	172	1.30e-55	183
MsaG034318	MtrunA17_Chr1g0147421	76.852	108	23	1	10	115	75	182	1.67e-53	177
MsaG034318	MtrunA17_Chr2g0316971	78.302	106	17	3	11	110	71	176	5.84e-52	174
MsaG034318	MtrunA17_Chr6g0453451	69.725	109	29	1	11	115	68	176	3.91e-51	171
MsaG034318	MtrunA17_Chr7g0253011	70.339	118	27	3	11	120	65	182	4.08e-50	169
MsaG034318	MtrunA17_Chr7g0217721	45.972	211	75	5	12	190	68	271	1.66e-46	159
MsaG034318	MtrunA17_Chr2g0312321	41.232	211	112	5	12	217	58	261	3.08e-45	155

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034318	AT3G18400.1	53.846	286	101	11	10	287	52	314	4.07e-83	253
MsaG034318	AT5G61430.2	76.852	108	21	2	12	115	2	109	8.34e-56	181
MsaG034318	AT5G61430.1	76.852	108	21	2	12	115	65	172	1.22e-54	180
MsaG034318	AT5G39610.1	75.676	111	22	2	11	116	68	178	1.28e-53	176
MsaG034318	AT5G07680.2	73.394	109	25	2	11	115	51	159	3.30e-53	176
MsaG034318	AT5G07680.1	73.394	109	25	2	11	115	65	173	6.58e-53	176
MsaG034318	AT5G53950.1	78.505	107	17	3	10	110	64	170	7.87e-53	177
MsaG034318	AT2G24430.2	76.852	108	22	2	11	115	64	171	8.71e-53	175
MsaG034318	AT2G24430.1	76.852	108	22	2	11	115	64	171	8.71e-53	175
MsaG034318	AT5G18270.2	75.962	104	20	2	11	109	69	172	4.08e-52	174

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Find 61 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATAAGGAAATATTTCG+TGG	0.545961	6:-110340518	MsaT034318.1:CDS
AAGGGGTGAGAAAAGTAATT+GGG	0.515394	6:-110340441	MsaT034318.1:CDS
AATAAATCCAAATTGTCAAA+GGG	0.540643	6:-110341934	MsaT034318.1:intron
AATATTTCGTGGTGGAGTTT+TGG	0.365969	6:-110340507	MsaT034318.1:CDS
ACAAATTCATCATCTTCATG+TGG	0.605409	6:-110339964	MsaT034318.1:CDS
ACAAGAGCAACCATTCAATT+TGG	0.264812	6:-110339581	MsaT034318.1:CDS
ACACCACTTTCGAACTTCAA+AGG	0.552288	6:-110340390	MsaT034318.1:intron
ACCAAATTCATTCACTATTG+AGG	0.421602	6:+110340017	None:intergenic
ACCAATCGAGCCACTGAATC+AGG	0.358376	6:-110340560	MsaT034318.1:CDS
ACCTCAATAGTGAATGAATT+TGG	0.270479	6:-110340018	MsaT034318.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	110339567	110341962	110339567	ID=MsaG034318
Chr6	mRNA	110339567	110341962	110339567	ID=MsaT034318.1;Parent=MsaG034318
Chr6	exon	110339567	110340136	110339567	ID=MsaT034318.1.exon3;Parent=MsaT034318.1
Chr6	CDS	110339567	110340136	110339567	ID=cds.MsaT034318.1;Parent=MsaT034318.1
Chr6	exon	110340391	110340656	110340391	ID=MsaT034318.1.exon2;Parent=MsaT034318.1
Chr6	CDS	110340391	110340656	110340391	ID=cds.MsaT034318.1;Parent=MsaT034318.1
Chr6	exon	110341935	110341962	110341935	ID=MsaT034318.1.exon1;Parent=MsaT034318.1
Chr6	CDS	110341935	110341962	110341935	ID=cds.MsaT034318.1;Parent=MsaT034318.1

Gene Sequence

>MsaT034318.1

ATGGATAATAAATCCAAATTGTCAAAGGGTAAGGCTTCAATGGGGGAGAAGGAATGGTATTTCTTCAGTGTAAGAGATAGAAAATATCCAACTGGACTTCGAACCAATCGAGCCACTGAATCAGGATATTGGAAAACCACTGGAAAAGATAAGGAAATATTTCGTGGTGGAGTTTTGGTAGGAATGAAGAAAACCCTAGTGTTTTATAAGGGTAGGGCTCCAAGGGGTGAGAAAAGTAATTGGGTCATGCATGAATATAGACTAGAAAACAAACACCACTTTCGAACTTCAAAGGATGAATGGGTGGTTTGTAGGGTTTTCCAAAAGAGCATATCAACAAAAAAACCACAACAAACGTCATTTTCCCAACCAGAATCTCCATGTGACACAACCTCAATAGTGAATGAATTTGGTGATGTTGAGCTTCCAAATCTAAATGGTATTACAAATTCATCATCTTCATGTGGATTCACCAACATTATTCAAGGGCAAACATTCAACACTCATCATGATGATCTCACTAATGTTAACACAAATATGAATTTAACAATGAATTGGCCATCTTCAAGTCATGTTCCATCTCCACCATGGCCTTCTAACTTGCTTAATCCAAATAATATTTCAGTAAATTCATTACTTCTAAAAGCATTACAAATTAGGAATTATCAACATCAAAGAGAAGTTGCAGCTACAAATACTCATTTTGCACCATACATGCCTCAACAAGGAGTAATATCTCATCACCAACTTGGAACTGATCTAAGTAATAATTCAAATGATCTAAGTGCTTGTTCTTCAAAAGTTTTAGAGTGTATGCCACAGCATCAACAAGAGCAACCATTCAATTTGGACTCCATTTGGTGA

Protein sequence

>MsaT034318.1

MDNKSKLSKGKASMGEKEWYFFSVRDRKYPTGLRTNRATESGYWKTTGKDKEIFRGGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLENKHHFRTSKDEWVVCRVFQKSISTKKPQQTSFSQPESPCDTTSIVNEFGDVELPNLNGITNSSSSCGFTNIIQGQTFNTHHDDLTNVNTNMNLTMNWPSSSHVPSPPWPSNLLNPNNISVNSLLLKALQIRNYQHQREVAATNTHFAPYMPQQGVISHHQLGTDLSNNSNDLSACSSKVLECMPQHQQEQPFNLDSIW*