AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG034318

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG034318 MtrunA17_Chr6g0484441 95.324 278 9 1 10 287 52 325 0.0 552
MsaG034318 MtrunA17_Chr4g0060931 65.333 150 39 3 11 156 65 205 3.37e-59 192
MsaG034318 MtrunA17_Chr3g0091921 54.497 189 74 5 11 188 64 251 9.74e-58 187
MsaG034318 MtrunA17_Chr3g0139331 69.600 125 26 2 10 132 58 172 1.30e-55 183
MsaG034318 MtrunA17_Chr1g0147421 76.852 108 23 1 10 115 75 182 1.67e-53 177
MsaG034318 MtrunA17_Chr2g0316971 78.302 106 17 3 11 110 71 176 5.84e-52 174
MsaG034318 MtrunA17_Chr6g0453451 69.725 109 29 1 11 115 68 176 3.91e-51 171
MsaG034318 MtrunA17_Chr7g0253011 70.339 118 27 3 11 120 65 182 4.08e-50 169
MsaG034318 MtrunA17_Chr7g0217721 45.972 211 75 5 12 190 68 271 1.66e-46 159
MsaG034318 MtrunA17_Chr2g0312321 41.232 211 112 5 12 217 58 261 3.08e-45 155
MsaG034318 MtrunA17_Chr6g0461661 67.227 119 30 4 11 122 66 182 3.82e-45 156
MsaG034318 MtrunA17_Chr3g0113001 66.055 109 32 2 12 115 14 122 9.26e-45 153
MsaG034318 MtrunA17_Chr4g0018391 51.111 135 63 1 16 150 63 194 4.24e-42 147
MsaG034318 MtrunA17_Chr7g0217711 80.769 78 15 0 12 89 68 145 1.62e-41 141
MsaG034318 MtrunA17_Chr4g0056541 56.140 114 47 2 16 129 63 173 1.91e-40 144
MsaG034318 MtrunA17_Chr3g0144271 60.656 122 38 4 12 128 73 189 2.69e-40 145
MsaG034318 MtrunA17_Chr5g0398971 56.522 115 43 3 16 128 63 172 3.85e-39 140
MsaG034318 MtrunA17_Chr8g0359921 57.500 120 46 3 10 125 61 179 8.97e-39 138
MsaG034318 MtrunA17_Chr4g0042561 41.243 177 92 2 11 181 57 227 1.00e-38 137
MsaG034318 MtrunA17_Chr2g0318081 58.333 108 43 1 11 116 64 171 6.81e-38 137
MsaG034318 MtrunA17_Chr5g0405211 61.957 92 35 0 18 109 66 157 1.10e-37 136
MsaG034318 MtrunA17_Chr8g0372121 57.732 97 41 0 18 114 64 160 1.95e-37 134
MsaG034318 MtrunA17_Chr2g0309331 53.509 114 49 2 9 118 56 169 3.91e-37 134
MsaG034318 MtrunA17_Chr5g0417791 54.545 110 44 1 11 114 51 160 5.04e-37 132
MsaG034318 MtrunA17_Chr1g0200561 54.455 101 46 0 16 116 75 175 1.20e-36 133
MsaG034318 MtrunA17_Chr3g0113031 55.462 119 47 2 24 136 1 119 2.11e-36 130
MsaG034318 MtrunA17_Chr1g0183741 60.000 100 36 2 12 109 59 156 3.06e-36 130
MsaG034318 MtrunA17_Chr4g0017921 62.245 98 36 1 12 109 60 156 3.23e-36 132
MsaG034318 MtrunA17_Chr6g0481091 48.592 142 65 4 18 155 63 200 4.41e-36 129
MsaG034318 MtrunA17_Chr7g0252971 54.310 116 38 3 10 110 55 170 1.44e-35 130
MsaG034318 MtrunA17_Chr2g0318101 51.639 122 44 3 10 116 62 183 2.42e-35 130
MsaG034318 MtrunA17_Chr4g0047841 49.286 140 44 4 11 123 63 202 2.82e-35 129
MsaG034318 MtrunA17_Chr8g0346001 54.286 105 37 1 16 109 71 175 7.72e-35 130
MsaG034318 MtrunA17_Chr7g0261411 58.586 99 37 2 12 108 59 155 1.09e-34 127
MsaG034318 MtrunA17_Chr2g0309891 59.794 97 36 1 18 111 63 159 1.42e-34 128
MsaG034318 MtrunA17_Chr3g0124761 54.955 111 44 2 10 115 54 163 1.57e-34 126
MsaG034318 MtrunA17_Chr8g0384721 52.800 125 45 4 12 125 56 177 1.62e-34 126
MsaG034318 MtrunA17_Chr7g0263931 57.009 107 38 2 11 109 59 165 1.80e-34 127
MsaG034318 MtrunA17_Chr3g0092671 60.606 99 38 1 18 115 63 161 4.96e-34 129
MsaG034318 MtrunA17_Chr1g0197361 54.955 111 47 2 6 115 56 164 7.53e-33 126
MsaG034318 MtrunA17_Chr3g0109821 59.375 96 36 1 18 110 63 158 7.61e-33 127
MsaG034318 MtrunA17_Chr5g0433781 58.763 97 38 1 16 110 61 157 1.05e-32 126
MsaG034318 MtrunA17_Chr3g0130731 56.075 107 37 3 16 115 60 163 3.78e-32 120
MsaG034318 MtrunA17_Chr3g0128151 56.250 96 40 1 16 109 77 172 5.98e-32 124
MsaG034318 MtrunA17_Chr5g0428991 54.167 96 42 1 16 109 80 175 1.53e-31 123
MsaG034318 MtrunA17_Chr3g0128111 56.383 94 39 1 18 109 99 192 5.12e-31 116
MsaG034318 MtrunA17_Chr3g0130101 55.670 97 41 1 15 109 61 157 8.83e-31 118
MsaG034318 MtrunA17_Chr2g0326361 51.786 112 46 2 11 114 62 173 1.28e-30 117
MsaG034318 MtrunA17_Chr7g0214071 51.961 102 47 1 16 115 65 166 1.69e-30 115
MsaG034318 MtrunA17_Chr8g0364791 52.577 97 44 1 15 109 60 156 1.75e-30 119
MsaG034318 MtrunA17_Chr8g0361731 45.299 117 51 3 12 115 63 179 2.46e-29 114
MsaG034318 MtrunA17_Chr5g0417001 47.414 116 49 3 12 115 63 178 2.50e-29 114
MsaG034318 MtrunA17_Chr8g0384201 50.515 97 46 1 15 109 60 156 2.55e-29 116
MsaG034318 MtrunA17_Chr4g0076731 51.456 103 43 2 12 110 103 202 6.36e-29 114
MsaG034318 MtrunA17_Chr1g0201021 38.750 160 90 3 15 172 73 226 8.30e-29 115
MsaG034318 MtrunA17_Chr6g0453131 44.000 125 57 3 12 124 64 187 1.32e-28 112
MsaG034318 MtrunA17_Chr5g0400461 51.485 101 41 2 16 109 61 160 1.79e-28 111
MsaG034318 MtrunA17_Chr4g0038751 43.697 119 61 2 10 125 62 177 2.05e-28 110
MsaG034318 MtrunA17_Chr2g0321741 49.451 91 41 1 16 106 46 131 1.60e-26 106
MsaG034318 MtrunA17_Chr4g0054791 44.444 117 54 3 18 126 63 176 3.51e-26 105
MsaG034318 MtrunA17_Chr2g0311651 34.254 181 93 4 7 170 67 238 3.25e-25 102
MsaG034318 MtrunA17_Chr1g0197351 46.847 111 51 1 7 109 88 198 2.34e-24 102
MsaG034318 MtrunA17_Chr2g0311661 39.683 126 59 2 7 115 66 191 3.23e-24 99.4
MsaG034318 MtrunA17_Chr5g0442771 41.667 120 52 3 12 115 67 184 2.52e-23 97.1
MsaG034318 MtrunA17_Chr7g0243371 51.899 79 36 1 16 92 17 95 1.94e-22 89.7
MsaG034318 MtrunA17_Chr8g0385991 41.000 100 50 2 16 106 65 164 1.68e-20 87.8
MsaG034318 MtrunA17_Chr8g0345671 47.312 93 43 3 16 106 67 155 3.23e-19 86.7
MsaG034318 MtrunA17_Chr3g0131911 40.000 110 54 2 15 112 64 173 3.24e-19 84.7
MsaG034318 MtrunA17_Chr7g0266701 38.182 110 59 3 10 110 56 165 4.34e-18 81.6
MsaG034318 MtrunA17_Chr8g0345691 46.154 91 43 4 18 106 70 156 2.52e-17 81.3
MsaG034318 MtrunA17_Chr4g0026141 38.095 105 59 3 16 114 63 167 5.07e-16 76.3
MsaG034318 MtrunA17_Chr2g0321631 38.095 105 58 4 10 107 56 160 8.00e-16 75.5
MsaG034318 MtrunA17_Chr4g0050701 29.452 146 82 4 9 144 57 191 7.20e-14 68.6
MsaG034318 MtrunA17_Chr8g0345701 41.593 113 40 6 7 103 56 158 1.67e-13 67.4
MsaG034318 MtrunA17_Chr8g0345721 41.096 73 40 2 16 86 120 191 3.64e-12 64.3
MsaG034318 MtrunA17_Chr8g0345741 42.466 73 39 3 16 86 47 118 5.94e-12 62.4
MsaG034318 MtrunA17_Chr8g0345711 45.205 73 37 3 16 86 68 139 2.43e-11 61.2
MsaG034318 MtrunA17_Chr4g0046431 34.127 126 69 4 20 137 132 251 5.84e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG034318 AT3G18400.1 53.846 286 101 11 10 287 52 314 4.07e-83 253
MsaG034318 AT5G61430.2 76.852 108 21 2 12 115 2 109 8.34e-56 181
MsaG034318 AT5G61430.1 76.852 108 21 2 12 115 65 172 1.22e-54 180
MsaG034318 AT5G39610.1 75.676 111 22 2 11 116 68 178 1.28e-53 176
MsaG034318 AT5G07680.2 73.394 109 25 2 11 115 51 159 3.30e-53 176
MsaG034318 AT5G07680.1 73.394 109 25 2 11 115 65 173 6.58e-53 176
MsaG034318 AT5G53950.1 78.505 107 17 3 10 110 64 170 7.87e-53 177
MsaG034318 AT2G24430.2 76.852 108 22 2 11 115 64 171 8.71e-53 175
MsaG034318 AT2G24430.1 76.852 108 22 2 11 115 64 171 8.71e-53 175
MsaG034318 AT5G18270.2 75.962 104 20 2 11 109 69 172 4.08e-52 174
MsaG034318 AT5G18270.1 75.000 104 21 2 11 109 69 172 1.11e-51 172
MsaG034318 AT1G76420.1 74.528 106 24 2 12 114 71 176 1.68e-50 169
MsaG034318 AT3G04060.1 75.728 103 20 2 12 109 69 171 1.79e-50 169
MsaG034318 AT3G29035.1 73.529 102 23 1 11 108 72 173 1.03e-47 162
MsaG034318 AT3G15170.1 53.012 166 69 5 11 170 68 230 4.32e-46 157
MsaG034318 AT1G56010.1 64.078 103 32 1 12 109 2 104 1.01e-44 152
MsaG034318 AT1G56010.2 64.078 103 32 1 12 109 69 171 5.98e-44 152
MsaG034318 AT3G12977.2 64.356 101 33 2 12 109 14 114 7.50e-42 144
MsaG034318 AT5G62380.2 60.577 104 41 0 10 113 57 160 3.42e-41 145
MsaG034318 AT5G62380.1 60.577 104 41 0 10 113 57 160 3.42e-41 145
MsaG034318 AT3G12977.1 64.356 101 33 2 12 109 67 167 7.95e-41 143
MsaG034318 AT1G71930.2 57.426 101 43 0 16 116 65 165 7.21e-40 142
MsaG034318 AT1G71930.1 57.426 101 43 0 16 116 65 165 7.21e-40 142
MsaG034318 AT1G62700.1 60.204 98 39 0 16 113 63 160 3.24e-39 141
MsaG034318 AT1G62700.2 60.204 98 39 0 16 113 63 160 3.24e-39 141
MsaG034318 AT1G12260.1 59.184 98 40 0 16 113 63 160 5.68e-39 141
MsaG034318 AT1G12260.2 59.184 98 40 0 16 113 63 160 6.76e-39 139
MsaG034318 AT4G27410.3 41.436 181 92 4 10 188 78 246 1.38e-38 138
MsaG034318 AT4G27410.2 41.111 180 92 4 11 188 62 229 5.36e-38 136
MsaG034318 AT4G36160.1 56.863 102 44 0 18 119 68 169 1.47e-37 137
MsaG034318 AT4G36160.3 56.863 102 44 0 18 119 68 169 1.47e-37 137
MsaG034318 AT4G36160.2 51.240 121 54 1 18 133 72 192 1.60e-37 137
MsaG034318 AT3G10500.1 64.000 100 34 1 18 115 66 165 1.69e-37 139
MsaG034318 AT2G18060.3 61.957 92 35 0 18 109 67 158 2.53e-37 136
MsaG034318 AT2G18060.1 61.957 92 35 0 18 109 67 158 2.53e-37 136
MsaG034318 AT3G15500.1 57.944 107 43 1 11 115 62 168 8.55e-37 133
MsaG034318 AT4G10350.2 61.000 100 37 1 12 109 14 113 9.94e-37 132
MsaG034318 AT1G33280.1 50.746 134 53 2 12 133 60 192 1.22e-36 132
MsaG034318 AT1G69490.1 48.507 134 61 2 11 136 57 190 2.92e-36 130
MsaG034318 AT5G04410.1 60.577 104 39 1 9 110 57 160 3.09e-36 136
MsaG034318 AT3G04070.2 42.458 179 71 7 10 163 57 228 3.91e-36 132
MsaG034318 AT4G10350.1 61.000 100 37 1 12 109 61 160 3.95e-36 132
MsaG034318 AT1G52890.1 57.944 107 43 1 11 115 62 168 4.10e-36 131
MsaG034318 AT2G46770.1 55.046 109 34 3 16 109 72 180 2.03e-35 131
MsaG034318 AT5G66300.1 57.282 103 41 2 18 117 70 172 2.86e-35 129
MsaG034318 AT5G08790.1 41.361 191 76 8 15 180 59 238 5.66e-35 127
MsaG034318 AT3G04070.1 38.974 195 71 6 10 163 57 244 8.82e-35 129
MsaG034318 AT4G28530.1 61.000 100 35 2 12 109 75 172 1.13e-34 129
MsaG034318 AT1G01720.1 40.201 199 87 6 10 179 54 249 1.46e-34 127
MsaG034318 AT3G17730.1 59.574 94 36 1 18 109 63 156 1.71e-34 125
MsaG034318 AT3G61910.1 52.294 109 37 1 16 109 67 175 2.66e-34 127
MsaG034318 AT4G35580.1 46.405 153 65 6 18 158 66 213 5.13e-34 129
MsaG034318 AT4G35580.3 46.405 153 65 6 18 158 66 213 6.44e-34 129
MsaG034318 AT4G35580.2 46.405 153 65 6 18 158 66 213 6.83e-34 129
MsaG034318 AT1G33060.2 54.369 103 45 1 16 116 79 181 1.56e-33 129
MsaG034318 AT1G33060.1 54.369 103 45 1 16 116 79 181 1.56e-33 129
MsaG034318 AT3G15510.1 51.667 120 43 3 10 114 64 183 1.61e-33 125
MsaG034318 AT1G77450.1 57.282 103 38 2 12 109 59 160 3.07e-33 122
MsaG034318 AT1G79580.3 55.238 105 42 3 9 109 63 166 3.39e-33 125
MsaG034318 AT1G79580.5 55.238 105 42 3 9 109 63 166 3.39e-33 125
MsaG034318 AT1G79580.4 55.238 105 42 3 9 109 63 166 3.39e-33 125
MsaG034318 AT1G79580.2 55.238 105 42 3 9 109 63 166 3.39e-33 125
MsaG034318 AT1G79580.1 55.238 105 42 3 9 109 63 166 3.39e-33 125
MsaG034318 AT1G65910.1 53.097 113 49 2 10 118 53 165 5.83e-33 127
MsaG034318 AT5G63790.1 48.837 129 54 3 12 131 99 224 5.98e-33 123
MsaG034318 AT5G63790.2 48.837 129 54 3 12 131 109 234 5.99e-33 123
MsaG034318 AT3G10490.1 57.732 97 38 1 16 109 82 178 9.96e-33 120
MsaG034318 AT1G61110.1 50.413 121 44 3 11 116 64 183 1.17e-32 122
MsaG034318 AT3G10490.2 57.732 97 38 1 16 109 82 178 2.55e-32 124
MsaG034318 AT1G32770.1 50.909 110 42 1 12 109 68 177 3.82e-32 122
MsaG034318 AT3G10480.1 58.763 97 37 1 16 109 82 178 5.80e-32 123
MsaG034318 AT3G03200.1 52.381 105 47 1 16 117 61 165 9.28e-32 123
MsaG034318 AT3G10480.3 58.763 97 37 1 16 109 115 211 1.63e-31 122
MsaG034318 AT2G33480.2 56.701 97 42 0 16 112 65 161 1.63e-31 118
MsaG034318 AT5G17260.1 51.429 105 48 1 16 117 61 165 1.70e-31 122
MsaG034318 AT5G46590.1 56.122 98 39 2 16 109 61 158 2.64e-31 118
MsaG034318 AT2G33480.3 55.556 99 42 1 16 112 8 106 5.25e-31 115
MsaG034318 AT3G10480.2 58.763 97 36 2 16 109 82 177 7.42e-31 120
MsaG034318 AT2G33480.1 55.556 99 42 1 16 112 65 163 2.84e-30 115
MsaG034318 AT5G13180.1 55.670 97 40 2 16 109 64 160 6.77e-30 114
MsaG034318 AT5G46590.2 64.865 74 25 1 16 88 61 134 1.14e-29 114
MsaG034318 AT1G54330.1 55.000 100 44 1 16 115 61 159 1.53e-29 114
MsaG034318 AT1G52880.1 52.542 118 42 3 10 113 64 181 4.55e-29 113
MsaG034318 AT5G09330.5 49.485 97 47 1 15 109 60 156 9.31e-29 114
MsaG034318 AT5G09330.2 49.485 97 47 1 15 109 60 156 9.31e-29 114
MsaG034318 AT5G09330.4 49.485 97 47 1 15 109 60 156 9.31e-29 114
MsaG034318 AT5G09330.3 49.485 97 47 1 15 109 60 156 9.31e-29 114
MsaG034318 AT5G09330.1 49.485 97 47 1 15 109 60 156 9.31e-29 114
MsaG034318 AT5G24590.2 38.356 146 84 3 16 155 68 213 5.40e-28 112
MsaG034318 AT2G02450.1 50.505 99 48 1 12 109 100 198 7.96e-28 110
MsaG034318 AT2G02450.2 50.505 99 48 1 12 109 100 198 9.68e-28 111
MsaG034318 AT5G39820.1 39.161 143 60 4 12 127 69 211 1.13e-27 109
MsaG034318 AT1G26870.1 42.754 138 62 5 12 132 65 202 2.03e-27 110
MsaG034318 AT1G34190.1 43.750 112 61 1 1 110 56 167 2.35e-27 111
MsaG034318 AT2G43000.1 44.444 108 57 1 12 116 67 174 4.26e-27 107
MsaG034318 AT1G34180.3 45.631 103 54 1 15 115 70 172 4.56e-27 109
MsaG034318 AT1G34180.4 45.631 103 54 1 15 115 82 184 4.78e-27 109
MsaG034318 AT4G17980.1 53.061 98 40 3 18 109 63 160 6.04e-27 106
MsaG034318 AT1G34180.1 45.631 103 54 1 15 115 70 172 8.01e-27 110
MsaG034318 AT4G17980.2 53.061 98 40 3 18 109 63 160 8.33e-27 106
MsaG034318 AT1G34180.2 45.536 112 57 2 1 110 70 179 8.35e-27 110
MsaG034318 AT2G17040.1 39.437 142 73 4 10 141 53 191 1.18e-26 105
MsaG034318 AT5G64060.1 44.330 97 52 1 15 109 60 156 3.46e-26 106
MsaG034318 AT3G49530.2 48.454 97 47 2 16 109 68 164 5.12e-26 106
MsaG034318 AT1G32870.1 50.962 104 45 2 16 115 65 166 7.79e-26 107
MsaG034318 AT1G32870.2 50.962 104 45 2 16 115 65 166 8.11e-26 107
MsaG034318 AT3G49530.1 48.454 97 47 2 16 109 68 164 1.09e-25 106
MsaG034318 AT1G32870.3 50.962 104 45 2 16 115 101 202 1.18e-25 106
MsaG034318 AT2G27300.1 49.451 91 41 1 16 106 68 153 4.76e-25 102
MsaG034318 AT1G32510.1 47.273 110 48 2 16 115 61 170 7.20e-25 101
MsaG034318 AT5G22290.1 41.593 113 57 2 16 123 75 183 9.51e-25 102
MsaG034318 AT3G10490.4 59.740 77 28 1 36 109 2 78 2.64e-24 100
MsaG034318 AT3G10490.3 59.740 77 28 1 36 109 2 78 2.64e-24 100
MsaG034318 AT3G44290.2 43.925 107 50 2 16 117 68 169 3.12e-24 98.2
MsaG034318 AT3G44290.1 42.017 119 53 3 16 129 68 175 5.88e-24 99.8
MsaG034318 AT2G18060.2 56.522 69 30 0 41 109 2 70 1.36e-23 97.4
MsaG034318 AT3G12910.1 39.316 117 54 2 16 115 75 191 2.83e-22 94.4
MsaG034318 AT2G43000.2 40.625 96 54 1 24 116 1 96 3.14e-20 86.7
MsaG034318 AT5G04395.1 52.632 76 33 1 16 88 94 169 1.86e-19 84.3
MsaG034318 AT4G01540.3 38.583 127 69 4 18 141 63 183 6.33e-19 86.7
MsaG034318 AT4G01540.4 38.583 127 69 4 18 141 63 183 6.38e-19 86.3
MsaG034318 AT4G01540.2 38.583 127 69 4 18 141 63 183 8.70e-19 86.3
MsaG034318 AT4G01540.1 46.739 92 43 3 18 106 63 151 8.83e-19 86.3
MsaG034318 AT4G01520.1 44.565 92 45 3 18 106 63 151 3.91e-18 83.2
MsaG034318 AT3G44350.2 38.182 110 63 3 10 114 56 165 1.13e-16 77.8
MsaG034318 AT3G04420.2 38.835 103 56 2 9 109 53 150 6.38e-16 76.6
MsaG034318 AT5G22290.2 40.230 87 43 2 42 123 2 84 1.13e-15 75.1
MsaG034318 AT3G04420.1 38.835 103 56 2 9 109 53 150 1.78e-15 75.9
MsaG034318 AT5G22380.1 36.893 103 60 2 17 114 65 167 7.06e-15 72.8
MsaG034318 AT4G28530.2 58.730 63 24 1 12 72 75 137 1.25e-14 73.2
MsaG034318 AT4G01550.1 40.625 96 47 3 19 109 63 153 2.90e-14 72.8
MsaG034318 AT3G44350.1 43.750 80 43 2 10 87 56 135 1.34e-13 67.8
MsaG034318 AT1G02230.1 35.526 152 87 6 19 165 63 208 3.21e-12 66.6
MsaG034318 AT1G02220.1 38.462 78 45 1 9 86 53 127 2.70e-11 63.9
MsaG034318 AT1G01010.1 40.404 99 40 5 19 106 63 153 3.28e-11 63.9

Find 61 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCTAACCCTTTGACAATT+TGG 0.134004 6:+110341927 None:intergenic
GAATTTACTGAAATATTATT+TGG 0.156112 6:+110339799 None:intergenic
TTCTAAAAGCATTACAAATT+AGG 0.238579 6:-110339771 MsaT034318.1:CDS
ACAAGAGCAACCATTCAATT+TGG 0.264812 6:-110339581 MsaT034318.1:CDS
ACCTCAATAGTGAATGAATT+TGG 0.270479 6:-110340018 MsaT034318.1:CDS
CATTCAATTTGGACTCCATT+TGG 0.322744 6:-110339570 MsaT034318.1:CDS
GTTGTGTCACATGGAGATTC+TGG 0.325153 6:+110340039 None:intergenic
GTTGAGCTTCCAAATCTAAA+TGG 0.329477 6:-110339991 MsaT034318.1:CDS
CAAGGGGTGAGAAAAGTAAT+TGG 0.333069 6:-110340442 MsaT034318.1:CDS
AGGATGAATGGGTGGTTTGT+AGG 0.345173 6:-110340116 MsaT034318.1:CDS
GAGCCACTGAATCAGGATAT+TGG 0.358273 6:-110340553 MsaT034318.1:CDS
ACCAATCGAGCCACTGAATC+AGG 0.358376 6:-110340560 MsaT034318.1:CDS
TTTGTAATACCATTTAGATT+TGG 0.362526 6:+110339982 None:intergenic
AATATTTCGTGGTGGAGTTT+TGG 0.365969 6:-110340507 MsaT034318.1:CDS
ATATGAATTTAACAATGAAT+TGG 0.377471 6:-110339873 MsaT034318.1:CDS
TTTGGATTAAGCAAGTTAGA+AGG 0.390098 6:+110339817 None:intergenic
GGATGAATGGGTGGTTTGTA+GGG 0.406490 6:-110340115 MsaT034318.1:CDS
TATACAGGTAAGGCTTCAAT+GGG 0.420887 6:-110340641 MsaT034318.1:intron
ACCAAATTCATTCACTATTG+AGG 0.421602 6:+110340017 None:intergenic
TTATACAGGTAAGGCTTCAA+TGG 0.441479 6:-110340642 MsaT034318.1:intron
ATTAGCTTAACTTCACCAAA+TGG 0.445281 6:+110339555 None:intergenic
ACTCCTTGTTGAGGCATGTA+TGG 0.449948 6:+110339700 None:intergenic
TCCTGATTCAGTGGCTCGAT+TGG 0.458380 6:+110340559 None:intergenic
AGAGATAGAAAATATCCAAC+TGG 0.467227 6:-110340590 MsaT034318.1:CDS
GGATTCACCAACATTATTCA+AGG 0.474165 6:-110339943 MsaT034318.1:CDS
TACTTAGATCAGTTCCAAGT+TGG 0.477373 6:+110339665 None:intergenic
TTATAAGGGTAGGGCTCCAA+GGG 0.492314 6:-110340459 MsaT034318.1:CDS
CAAATGGAGTCCAAATTGAA+TGG 0.497221 6:+110339571 None:intergenic
TTAGAAGGCCATGGTGGAGA+TGG 0.498330 6:+110339832 None:intergenic
TAATAAATCCAAATTGTCAA+AGG 0.510495 6:-110341935 MsaT034318.1:CDS
CCCTACCCTTATAAAACACT+AGG 0.512291 6:+110340468 None:intergenic
AAGGGGTGAGAAAAGTAATT+GGG 0.515394 6:-110340441 MsaT034318.1:CDS
GAAAACCACTGGAAAAGATA+AGG 0.516873 6:-110340531 MsaT034318.1:CDS
TTTATAAGGGTAGGGCTCCA+AGG 0.519624 6:-110340460 MsaT034318.1:CDS
GGTTGCTCTTGTTGATGCTG+TGG 0.527873 6:+110339592 None:intergenic
TCAGGATATTGGAAAACCAC+TGG 0.533477 6:-110340542 MsaT034318.1:CDS
ACTATTGAGGTTGTGTCACA+TGG 0.536553 6:+110340030 None:intergenic
AATAAATCCAAATTGTCAAA+GGG 0.540643 6:-110341934 MsaT034318.1:intron
TTTCCAATATCCTGATTCAG+TGG 0.541052 6:+110340550 None:intergenic
AAAGATAAGGAAATATTTCG+TGG 0.545961 6:-110340518 MsaT034318.1:CDS
TTACCTTTGAAGTTCGAAAG+TGG 0.550555 6:+110340387 None:intergenic
ACACCACTTTCGAACTTCAA+AGG 0.552288 6:-110340390 MsaT034318.1:intron
GTCACATGGAGATTCTGGTT+GGG 0.559177 6:+110340044 None:intergenic
GTAATATCTCATCACCAACT+TGG 0.564072 6:-110339679 MsaT034318.1:CDS
CGATTGGTTCGAAGTCCAGT+TGG 0.575025 6:+110340575 None:intergenic
GATTCACCAACATTATTCAA+GGG 0.576408 6:-110339942 MsaT034318.1:CDS
TGTTTGCCCTTGAATAATGT+TGG 0.580013 6:+110339936 None:intergenic
TGGGAAAATGACGTTTGTTG+TGG 0.583144 6:+110340063 None:intergenic
TGTCACATGGAGATTCTGGT+TGG 0.585895 6:+110340043 None:intergenic
CCTACCCTTATAAAACACTA+GGG 0.590419 6:+110340469 None:intergenic
ACAAATTCATCATCTTCATG+TGG 0.605409 6:-110339964 MsaT034318.1:CDS
TTAAGCAAGTTAGAAGGCCA+TGG 0.607519 6:+110339823 None:intergenic
TGAGATATTACTCCTTGTTG+AGG 0.618801 6:+110339691 None:intergenic
TACAGGTAAGGCTTCAATGG+GGG 0.621920 6:-110340639 MsaT034318.1:intron
GATGGAACATGACTTGAAGA+TGG 0.624581 6:+110339850 None:intergenic
GCACCATACATGCCTCAACA+AGG 0.631430 6:-110339703 MsaT034318.1:CDS
GATAAGGAAATATTTCGTGG+TGG 0.655075 6:-110340515 MsaT034318.1:CDS
GTCATGTTCCATCTCCACCA+TGG 0.663709 6:-110339840 MsaT034318.1:CDS
AGCAAGTTAGAAGGCCATGG+TGG 0.667741 6:+110339826 None:intergenic
TATAAGGGTAGGGCTCCAAG+GGG 0.710910 6:-110340458 MsaT034318.1:CDS
ATACAGGTAAGGCTTCAATG+GGG 0.733983 6:-110340640 MsaT034318.1:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr6 gene 110339567 110341962 110339567 ID=MsaG034318
Chr6 mRNA 110339567 110341962 110339567 ID=MsaT034318.1;Parent=MsaG034318
Chr6 exon 110339567 110340136 110339567 ID=MsaT034318.1.exon3;Parent=MsaT034318.1
Chr6 CDS 110339567 110340136 110339567 ID=cds.MsaT034318.1;Parent=MsaT034318.1
Chr6 exon 110340391 110340656 110340391 ID=MsaT034318.1.exon2;Parent=MsaT034318.1
Chr6 CDS 110340391 110340656 110340391 ID=cds.MsaT034318.1;Parent=MsaT034318.1
Chr6 exon 110341935 110341962 110341935 ID=MsaT034318.1.exon1;Parent=MsaT034318.1
Chr6 CDS 110341935 110341962 110341935 ID=cds.MsaT034318.1;Parent=MsaT034318.1
Gene Sequence

>MsaT034318.1

ATGGATAATAAATCCAAATTGTCAAAGGGTAAGGCTTCAATGGGGGAGAAGGAATGGTATTTCTTCAGTGTAAGAGATAGAAAATATCCAACTGGACTTCGAACCAATCGAGCCACTGAATCAGGATATTGGAAAACCACTGGAAAAGATAAGGAAATATTTCGTGGTGGAGTTTTGGTAGGAATGAAGAAAACCCTAGTGTTTTATAAGGGTAGGGCTCCAAGGGGTGAGAAAAGTAATTGGGTCATGCATGAATATAGACTAGAAAACAAACACCACTTTCGAACTTCAAAGGATGAATGGGTGGTTTGTAGGGTTTTCCAAAAGAGCATATCAACAAAAAAACCACAACAAACGTCATTTTCCCAACCAGAATCTCCATGTGACACAACCTCAATAGTGAATGAATTTGGTGATGTTGAGCTTCCAAATCTAAATGGTATTACAAATTCATCATCTTCATGTGGATTCACCAACATTATTCAAGGGCAAACATTCAACACTCATCATGATGATCTCACTAATGTTAACACAAATATGAATTTAACAATGAATTGGCCATCTTCAAGTCATGTTCCATCTCCACCATGGCCTTCTAACTTGCTTAATCCAAATAATATTTCAGTAAATTCATTACTTCTAAAAGCATTACAAATTAGGAATTATCAACATCAAAGAGAAGTTGCAGCTACAAATACTCATTTTGCACCATACATGCCTCAACAAGGAGTAATATCTCATCACCAACTTGGAACTGATCTAAGTAATAATTCAAATGATCTAAGTGCTTGTTCTTCAAAAGTTTTAGAGTGTATGCCACAGCATCAACAAGAGCAACCATTCAATTTGGACTCCATTTGGTGA
Protein sequence

>MsaT034318.1

MDNKSKLSKGKASMGEKEWYFFSVRDRKYPTGLRTNRATESGYWKTTGKDKEIFRGGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLENKHHFRTSKDEWVVCRVFQKSISTKKPQQTSFSQPESPCDTTSIVNEFGDVELPNLNGITNSSSSCGFTNIIQGQTFNTHHDDLTNVNTNMNLTMNWPSSSHVPSPPWPSNLLNPNNISVNSLLLKALQIRNYQHQREVAATNTHFAPYMPQQGVISHHQLGTDLSNNSNDLSACSSKVLECMPQHQQEQPFNLDSIW*