AlfalfaGEDB | MsaG034360

M. sativa ssp. caerulea / MsaG034360

KEGG: K14574
GO: GO:0000226 GO:0000278 GO:0000922 GO:0001501 GO:0001503 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006928 GO:0006935 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008283 GO:0009605 GO:0009888 GO:0009987 GO:0010467 GO:0015630 GO:0015631 GO:0016043 GO:0016070 GO:0016072 GO:0016477 GO:0019843 GO:0022402 GO:0022607 GO:0022613 GO:0022618 GO:0030282 GO:0030595 GO:0031214 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0040011 GO:0042221 GO:0042254 GO:0042255 GO:0042256 GO:0042330 GO:0043021 GO:0043022 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048513 GO:0048534 GO:0048539 GO:0048731 GO:0048856 GO:0048870 GO:0050896 GO:0050900 GO:0051179 GO:0051674 GO:0051716 GO:0060326 GO:0060348 GO:0065003 GO:0070013 GO:0070887 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902850 GO:1903047
PFAM: PF01172.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034360	XP_013453051.1	94.972	358	5	1	1	345	1	358	0.0	704

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034360	sp\|P70122\|SBDS_MOUSE	48.980	245	111	3	4	234	2	246	1.87e-75	236

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034360	tr\|A0A072UBA1\|A0A072UBA1_MEDTR	94.972	358	5	1	1	345	1	358	0.0	704

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TFs/TRs:

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Gene ID	Type	Classification
MsaG034360	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034360	MtrunA17_Chr6g0485001	94.972	358	5	1	1	345	1	358	0.0	704

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034360	AT1G43860.1	61.725	371	115	7	1	345	1	370	2.57e-160	453
MsaG034360	AT1G43860.2	56.522	345	114	8	27	345	1	335	3.85e-129	373

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Find 73 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTCTTGTGCATTACAA+TGG	0.555238	6:-111288037	None:intergenic
AAACAGCACCTCCAAGAAGC+AGG	0.539561	6:+111288137	MsaT034360.1:CDS
AAAGGGGAACTTCAGGTTGC+TGG	0.407398	6:+111287967	MsaT034360.1:CDS
AAGGATTTGAATGCGGCGTT+TGG	0.443098	6:+111285593	MsaT034360.1:CDS
AATGCTGTCTAGTCAGTTCA+GGG	0.557997	6:+111288005	MsaT034360.1:CDS
ACAAACCTCTAAGCAAATAC+TGG	0.388442	6:-111285630	None:intergenic
ACAAGATACCTGCTTCTTGG+AGG	0.519410	6:-111288145	None:intergenic
ACAATATGAAGCGTAAAACA+AGG	0.648014	6:+111289886	MsaT034360.1:CDS
ACAGGCTCTGGAGTTGATTC+AGG	0.285367	6:+111288247	MsaT034360.1:intron
ACCCTAACACCGTTCTTTCA+TGG	0.342417	6:+111285400	MsaT034360.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	111285300	111289995	111285300	ID=MsaG034360
Chr6	mRNA	111285300	111289995	111285300	ID=MsaT034360.1;Parent=MsaG034360
Chr6	exon	111285300	111285433	111285300	ID=MsaT034360.1.exon1;Parent=MsaT034360.1
Chr6	CDS	111285300	111285433	111285300	ID=cds.MsaT034360.1;Parent=MsaT034360.1
Chr6	exon	111285517	111285646	111285517	ID=MsaT034360.1.exon2;Parent=MsaT034360.1
Chr6	CDS	111285517	111285646	111285517	ID=cds.MsaT034360.1;Parent=MsaT034360.1
Chr6	exon	111287958	111288158	111287958	ID=MsaT034360.1.exon3;Parent=MsaT034360.1
Chr6	CDS	111287958	111288158	111287958	ID=cds.MsaT034360.1;Parent=MsaT034360.1
Chr6	exon	111288251	111288299	111288251	ID=MsaT034360.1.exon4;Parent=MsaT034360.1
Chr6	CDS	111288251	111288299	111288251	ID=cds.MsaT034360.1;Parent=MsaT034360.1
Chr6	exon	111288337	111288416	111288337	ID=MsaT034360.1.exon5;Parent=MsaT034360.1
Chr6	CDS	111288337	111288416	111288337	ID=cds.MsaT034360.1;Parent=MsaT034360.1
Chr6	exon	111289552	111289995	111289552	ID=MsaT034360.1.exon6;Parent=MsaT034360.1
Chr6	CDS	111289552	111289995	111289552	ID=cds.MsaT034360.1;Parent=MsaT034360.1

Gene Sequence

>MsaT034360.1

ATGTCTCGTTCATTGGTTCAACCAGTAGGTCAAAAGCGATTAACAAACGTAGCAGTTGTTCGTCTCAAGAAACACGGCATGCGTTTCGAAATCGCTTGTTACCCTAACACCGTTCTTTCATGGCGTTCCGGCGTTGAAAAGGATATTGATGAAGTGTTGCAGTCACATACGGTTTATACGAATGTTTCGAAAGGTGTTCTTGCTAAGTCTAAGGATTTGAATGCGGCGTTTGGTACTGATGATCATTCCAGTATTTGCTTAGAGATTTTAAAGAAAGGGGAACTTCAGGTTGCTGGTAAAGAGAGGGAGTCAATGCTGTCTAGTCAGTTCAGGGACATAGCCACCATTGTAATGCACAAGACTTTTAATCCCGAGACTAAGCGCCCTTACACTATCAGCATGATTGAACGCCTCATGAGGGATATCCATTTCGCTGTTGATCCAAACAGCACCTCCAAGAAGCAGGCTCTGGAGTTGATTCAGGAGCTTCAGAAGCACTACCCTATAAAGCGGTTACCTATCCTTTTGGAAAAGCTGAGCGAGTGGAAGGCAACCGTTATTTCTAAAGAAGGAACAGCTGCTCAGCTATCTGTTGTTTTTGAATTGGAGCCTGGTCTGTATAAGGATTGTCACGACTTTGTTATGAATAAGATGCATGGAAGATTTGAAGTTCTTGCTCACTCTCTTTATGTGGATGGGGATACTCATGTGGATTACAATGATCACGAGGACACGCCTGCACCATTGCCCCAAAGAACTTCTGAATCCGTGCTTGAGCTGAATGATAAACTTCAAAAGCAAACAATTTCGTCTGGACCTAAGCCTACTGAGGGACAACAACCAAAGCAAAACAAGTGCAACACATGTGATGCTTGTTTTGAAGATGCTAAGTTGTACAGGGAACACCACAAGAGTGAGTGGCACAAGCACAATATGAAGCGTAAAACAAGGCAACTCCCTCCACTATCTGAAGAAGAGTGCACAGCAGATATGGAATTGTTTGAATCAAAATCTGATTTGAAGGATTATTCATTTTGA

Protein sequence

>MsaT034360.1

MSRSLVQPVGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDIDEVLQSHTVYTNVSKGVLAKSKDLNAAFGTDDHSSICLEILKKGELQVAGKERESMLSSQFRDIATIVMHKTFNPETKRPYTISMIERLMRDIHFAVDPNSTSKKQALELIQELQKHYPIKRLPILLEKLSEWKATVISKEGTAAQLSVVFELEPGLYKDCHDFVMNKMHGRFEVLAHSLYVDGDTHVDYNDHEDTPAPLPQRTSESVLELNDKLQKQTISSGPKPTEGQQPKQNKCNTCDACFEDAKLYREHHKSEWHKHNMKRKTRQLPPLSEEECTADMELFESKSDLKDYSF*