AlfalfaGEDB | MsaG034384

M. sativa ssp. caerulea / MsaG034384

KEGG: K03627
GO: GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF08523.13

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034384	XP_039682685.1	99.315	146	1	0	1	146	4	149	2.45e-98	289

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034384	sp\|Q9LV58\|MBF1C_ARATH	71.622	148	40	1	1	146	1	148	2.79e-68	206

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034384	tr\|G7KNH9\|G7KNH9_MEDTR	99.315	146	1	0	1	146	4	149	1.17e-98	289

TFs/TRs:

Gene ID	Type	Classification
MsaG034384	TR	MBF1

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG011227	MsaG034384	0.807672	7.662487e-50	1.237171e-47
MsaG034384	MsaG034866	0.821452	7.044566e-53	1.610018e-50
MsaG034384	MsaG040390	0.810123	2.304941e-50	3.947922e-48
MsaG034384	MsaG011701	0.802720	8.247444e-49	1.186084e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034384	MtrunA17_Chr6g0485281	99.167	120	1	1	120	4	123	6.76e-84	241
MsaG034384	MtrunA17_Chr2g0320211	50.725	138	68	6	143	2	139	4.95e-44	141
MsaG034384	MtrunA17_Chr4g0041301	51.449	138	67	6	143	4	141	1.13e-42	138
MsaG034384	MtrunA17_Chr6g0457491	58.491	53	22	91	143	2	54	1.03e-16	69.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034384	AT3G24500.1	71.622	148	40	1	1	146	1	148	2.84e-69	206
MsaG034384	AT3G58680.1	52.899	138	65	0	6	143	4	141	4.79e-45	144
MsaG034384	AT2G42680.1	51.449	138	67	0	6	143	4	141	9.44e-44	141
MsaG034384	AT3G24500.2	60.000	95	36	1	1	93	1	95	1.11e-33	114

Find 42 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGTTCGGAGGGCTTGGTTTA+TGG	0.142766	6:-111597445	None:intergenic
GGGGAAAATGGAGAGGGTTT+TGG	0.193937	6:+111597734	MsaT034384.1:CDS
TGTTATTAATCAGGGTGTTT+TGG	0.262576	6:+111597713	MsaT034384.1:CDS
GTTAAACTTAGGGGTAAAAT+TGG	0.277746	6:+111597759	MsaT034384.1:CDS
CTGCTCCGGTTCGGAGGGCT+TGG	0.299889	6:-111597452	None:intergenic
AGGGCTTGGTTTATGGCCTT+TGG	0.306456	6:-111597438	None:intergenic
TTACGAAGGTCTTGTGCTTT+GGG	0.313592	6:-111597414	None:intergenic
TGAAAGGGTTCAGGTTGTTC+AGG	0.318932	6:+111597671	MsaT034384.1:CDS
GTTACGAAGGTCTTGTGCTT+TGG	0.324998	6:-111597415	None:intergenic
CGCGATACAGAAAGCGCGTT+TGG	0.332684	6:+111597608	MsaT034384.1:CDS
ATTGATTAATGAAAGGGTTC+AGG	0.341931	6:+111597662	MsaT034384.1:CDS
TGGTAAAGCTGTTATTAATC+AGG	0.346445	6:+111597704	MsaT034384.1:CDS
GAAGATGAGTCAGGGTGATT+TGG	0.359012	6:+111597635	MsaT034384.1:CDS
AAGGTCTTGTGCTTTGGGTT+TGG	0.379299	6:-111597409	None:intergenic
AGCTTCCTCGCGTTTAAAAC+CGG	0.385062	6:-111597531	None:intergenic
GGGCTTGGTTTATGGCCTTT+GGG	0.397588	6:-111597437	None:intergenic
GGCGAAATTGATTAATGAAA+GGG	0.407053	6:+111597656	MsaT034384.1:CDS
CTGAACCAGCAGCGTTGGAG+CGG	0.424927	6:+111597565	MsaT034384.1:CDS
TAGGAACAATAAAACAAGAC+TGG	0.459948	6:+111597364	MsaT034384.1:CDS
ATAAACCAAGCCCTCCGAAC+CGG	0.471149	6:+111597447	MsaT034384.1:CDS
GCAGCGTTGGAGCGGGTTGG+TGG	0.474323	6:+111597573	MsaT034384.1:CDS
TGGCGAAATTGATTAATGAA+AGG	0.476549	6:+111597655	MsaT034384.1:CDS
TTTGGATAAGAAGATGAGTC+AGG	0.478923	6:+111597626	MsaT034384.1:CDS
AGCGGCTGAACCAGCAGCGT+TGG	0.495442	6:+111597560	MsaT034384.1:CDS
TTAAGACCTCTGCTCCGGTT+CGG	0.505245	6:-111597461	None:intergenic
GACTGTTAAGACCTCTGCTC+CGG	0.505477	6:-111597466	None:intergenic
CCAACCCGCTCCAACGCTGC+TGG	0.509376	6:-111597570	None:intergenic
GACCTCTGCTCCGGTTCGGA+GGG	0.511130	6:-111597457	None:intergenic
TGAACCAGCAGCGTTGGAGC+GGG	0.514144	6:+111597566	MsaT034384.1:CDS
AGACCTCTGCTCCGGTTCGG+AGG	0.519624	6:-111597458	None:intergenic
ATTGTTCCTACTGTTCGTGT+CGG	0.524804	6:-111597351	None:intergenic
GGTAAAGCTGTTATTAATCA+GGG	0.553453	6:+111597705	MsaT034384.1:CDS
CGCGAGGAAGCTAGATGAAG+CGG	0.564479	6:+111597542	MsaT034384.1:CDS
GTTGTTCAGGAGTATGAGAA+TGG	0.565499	6:+111597684	MsaT034384.1:CDS
AGCCCTCCGAACCGGAGCAG+AGG	0.582656	6:+111597455	MsaT034384.1:CDS
CCAGCAGCGTTGGAGCGGGT+TGG	0.583304	6:+111597570	MsaT034384.1:CDS
ACGATGCCGACACGAACAGT+AGG	0.590972	6:+111597345	None:intergenic
TTATGGCCTTTGGGTTACGA+AGG	0.594530	6:-111597428	None:intergenic
AGGAACAATAAAACAAGACT+GGG	0.609753	6:+111597365	MsaT034384.1:CDS
AAAACAAGACTGGGAACCCG+TGG	0.638139	6:+111597374	MsaT034384.1:CDS
TTGGATAAGAAGATGAGTCA+GGG	0.654305	6:+111597627	MsaT034384.1:CDS
ACAAGACCTTCGTAACCCAA+AGG	0.679598	6:+111597422	MsaT034384.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	111597348	111597788	111597348	ID=MsaG034384
Chr6	mRNA	111597348	111597788	111597348	ID=MsaT034384.1;Parent=MsaG034384
Chr6	exon	111597348	111597788	111597348	ID=MsaT034384.1.exon1;Parent=MsaT034384.1
Chr6	CDS	111597348	111597788	111597348	ID=cds.MsaT034384.1;Parent=MsaT034384.1

Gene Sequence

>MsaT034384.1

ATGCCGACACGAACAGTAGGAACAATAAAACAAGACTGGGAACCCGTGGTTCTCCACAAAACCAAACCCAAAGCACAAGACCTTCGTAACCCAAAGGCCATAAACCAAGCCCTCCGAACCGGAGCAGAGGTCTTAACAGTCAAAAAACCAACAGCCGGTTCGAACAAAAAAGCAACGGCTGGACCGGTTTTAAACGCGAGGAAGCTAGATGAAGCGGCTGAACCAGCAGCGTTGGAGCGGGTTGGTGGAGAAGTGAGACACGCGATACAGAAAGCGCGTTTGGATAAGAAGATGAGTCAGGGTGATTTGGCGAAATTGATTAATGAAAGGGTTCAGGTTGTTCAGGAGTATGAGAATGGTAAAGCTGTTATTAATCAGGGTGTTTTGGGGAAAATGGAGAGGGTTTTGGGGGTTAAACTTAGGGGTAAAATTGGAAAATAA

Protein sequence

>MsaT034384.1

MPTRTVGTIKQDWEPVVLHKTKPKAQDLRNPKAINQALRTGAEVLTVKKPTAGSNKKATAGPVLNARKLDEAAEPAALERVGGEVRHAIQKARLDKKMSQGDLAKLINERVQVVQEYENGKAVINQGVLGKMERVLGVKLRGKIGK*