AlfalfaGEDB | MsaG034398

M. sativa ssp. caerulea / MsaG034398

KEGG: K13424
GO: GO:0001067 GO:0001101 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0043901 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1900150 GO:1900424 GO:1900425 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034398	KEH27101.1	89.474	361	38	0	1	361	53	413	0.0	665

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034398	sp\|Q9FFS3\|WRK24_ARATH	53.425	73	33	1	139	211	83	154	1.10e-21	94.0

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034398	tr\|A0A072UCB0\|A0A072UCB0_MEDTR	89.474	361	38	0	1	361	53	413	0.0	665

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG034398	TF	WRKY

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000024	MsaG034398	0.818748	2.910454e-52	6.193549e-50
MsaG000052	MsaG034398	0.820898	9.436598e-53	2.125384e-50
MsaG000062	MsaG034398	0.800627	2.206735e-48	3.026236e-46
MsaG000070	MsaG034398	0.824551	1.345369e-53	3.343045e-51
MsaG000083	MsaG034398	0.835789	2.497424e-56	8.565220e-54
MsaG000113	MsaG034398	0.828373	1.667761e-54	4.608958e-52
MsaG000117	MsaG034398	0.812532	6.954161e-51	1.263679e-48
MsaG000164	MsaG034398	0.850335	3.457945e-60	1.895584e-57
MsaG000274	MsaG034398	0.878615	5.106598e-69	8.645792e-66
MsaG000292	MsaG034398	0.851088	2.126865e-60	1.196782e-57

Showing 1 to 10 of 1,285 entries

Previous1 2 3 4 5…129Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034398	MtrunA17_Chr6g0485431	89.474	361	38	0	1	361	1	361	0.0	664
MsaG034398	MtrunA17_Chr1g0189391	45.075	335	152	7	58	361	1	334	5.58e-81	250
MsaG034398	MtrunA17_Chr7g0249311	43.089	123	68	2	103	225	342	462	3.77e-24	103
MsaG034398	MtrunA17_Chr7g0249311	40.741	81	46	2	155	235	180	258	1.32e-13	72.0
MsaG034398	MtrunA17_Chr5g0418191	50.000	98	40	2	140	237	306	394	1.06e-23	101
MsaG034398	MtrunA17_Chr5g0418191	39.450	109	55	5	126	230	119	220	1.07e-13	72.0
MsaG034398	MtrunA17_Chr7g0263531	34.868	152	94	3	80	231	291	437	3.49e-23	100
MsaG034398	MtrunA17_Chr7g0263531	46.667	75	38	2	155	229	190	262	5.85e-14	72.8
MsaG034398	MtrunA17_Chr4g0042831	56.000	75	32	1	140	214	264	337	1.45e-22	97.8
MsaG034398	MtrunA17_Chr4g0042831	47.059	68	34	2	148	214	138	204	5.47e-13	69.7

Showing 1 to 10 of 77 entries

Previous1 2 3 4 5…8Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034398	AT5G41570.1	53.425	73	33	1	139	211	83	154	1.12e-22	94.0
MsaG034398	AT1G13960.1	54.667	75	33	1	140	214	395	468	1.65e-22	99.0
MsaG034398	AT1G13960.1	46.575	73	36	3	148	219	222	292	3.63e-13	70.9
MsaG034398	AT4G18170.1	56.000	75	32	1	140	214	158	231	1.76e-22	96.7
MsaG034398	AT1G29860.1	56.757	74	31	1	141	214	123	195	1.91e-22	95.9
MsaG034398	AT1G13960.2	54.667	75	33	1	140	214	242	315	2.55e-22	97.1
MsaG034398	AT1G13960.2	46.575	73	36	3	148	219	69	139	1.26e-12	68.6
MsaG034398	AT2G03340.1	54.667	75	33	1	140	214	401	474	3.32e-22	98.2
MsaG034398	AT2G03340.1	47.761	67	32	3	149	214	244	308	1.41e-12	69.3
MsaG034398	AT1G64000.1	53.521	71	32	1	141	211	101	170	3.52e-22	93.2

Showing 1 to 10 of 104 entries

Previous1 2 3 4 5…11Next

Find 75 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCATGAAGTTCTGGTAG+TGG	0.536148	6:-111780003	None:intergenic
AACCTGTAATGTGAGAAAAC+AGG	0.528589	6:+111779591	MsaT034398.1:CDS
AAGATTCATAACTTTCAGAG+CGG	0.728852	6:-111779807	None:intergenic
AAGCAACATCATTCCTTCAA+TGG	0.416911	6:-111778583	None:intergenic
AAGGAAATGCTAAATACCCT+AGG	0.580382	6:+111778891	MsaT034398.1:CDS
AAGTGAATGATGGTTATCGT+TGG	0.626452	6:+111778843	MsaT034398.1:CDS
AATACCATGATGATGCCTTA+TGG	0.355278	6:+111779883	MsaT034398.1:CDS
AATACTGGGAACAGCTTGAG+AGG	0.558169	6:-111779959	None:intergenic
AATGAAGACAAAGTGAATGA+TGG	0.529985	6:+111778833	MsaT034398.1:CDS
ACAACACTTGATCAAGGACA+TGG	0.685805	6:+111778360	MsaT034398.1:CDS

Showing 1 to 10 of 75 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	111778291	111780128	111778291	ID=MsaG034398
Chr6	mRNA	111778291	111780128	111778291	ID=MsaT034398.1;Parent=MsaG034398
Chr6	exon	111778291	111778646	111778291	ID=MsaT034398.1.exon1;Parent=MsaT034398.1
Chr6	CDS	111778291	111778646	111778291	ID=cds.MsaT034398.1;Parent=MsaT034398.1
Chr6	exon	111778745	111778912	111778745	ID=MsaT034398.1.exon2;Parent=MsaT034398.1
Chr6	CDS	111778745	111778912	111778745	ID=cds.MsaT034398.1;Parent=MsaT034398.1
Chr6	exon	111779567	111780128	111779567	ID=MsaT034398.1.exon3;Parent=MsaT034398.1
Chr6	CDS	111779567	111780128	111779567	ID=cds.MsaT034398.1;Parent=MsaT034398.1

Gene Sequence

>MsaT034398.1

ATGGCAACGGGAGGAGGTGTAGAACTCCAAGATGAAGTTCAACATCCAATTTCAAATATTTCCTTCCCAACAACACTTGATCAAGGACATGGTGCAGAAAAAGAACAAGTCCATGTGCAAAGTAATGCAATTACGCTAAACGCTGAAATTCTAAAGGCTAGGAAAGGAAAGATGCCAATGAATTATCGTGAAGATGCACCTACCCAAGAAGTTGTTGCAGCTGATGAAGCAAAAACGGTATCCTTAGATGAACAACAAGTTACAAATACAACTATTGGTGTTGAAGCAAGTTCCATTGAAGGAATGATGTTGCTTCAACATAATGATACTAGTGCTAGTGGATCTTCTTCACAAAGGAAGAGGAAAATTGACTTCTCTGAACACTATAAACTCCCTTGCACCATGATAAATGTTGCGCCAAAAGTAGTGTTTAGAATTGAAATCAATGAAGACAAAGTGAATGATGGTTATCGTTGGCATAAGTATGGACGCAAGGAGATCAAAGGAAATGCTAAATACCCTAGGGGATACTACAGGTGTACAACAAAAACCTGTAATGTGAGAAAACAGGTGGAAAGGGATGCACAGAATCCGAAATATGTAATTGTTTCATATGAAGGCAAACATAATCACGGATTCCCTATCATAACAAAAAAAAATCCAACAAAGTCAAGTACTACACTGACAACAGTAGCACGTAGGAATGCTAGCATTGTATCGCCACCTTTTGCATTGCCTATGACCCAACCTTTCACACCTCCTCACCGCTCTGAAAGTTATGAATCTTATGGTAAGAACTGTACTTGGCCTAATAATAATCCTTTCTTGAACATGGTCAATAATACCATGATGATGCCTTATGGATATATTAATGGACAACATTTTCGAGATTGTTATGCTGCTCCTTCAATTGCTGCCTCTCAAGCTGTTCCCAGTATTGGTGGATTTCAAATATCTCCACCACTACCAGAACTTCATGATTTTCTTCGACTTAATGGGTACAATATTGCTGCTGCTAGAATGTTTCCTTTTGAAGGTGCTGCACCAATTAATCATGAAGCCAACGACAGTCCTAGTAATGAATGA

Protein sequence

>MsaT034398.1

MATGGGVELQDEVQHPISNISFPTTLDQGHGAEKEQVHVQSNAITLNAEILKARKGKMPMNYREDAPTQEVVAADEAKTVSLDEQQVTNTTIGVEASSIEGMMLLQHNDTSASGSSSQRKRKIDFSEHYKLPCTMINVAPKVVFRIEINEDKVNDGYRWHKYGRKEIKGNAKYPRGYYRCTTKTCNVRKQVERDAQNPKYVIVSYEGKHNHGFPIITKKNPTKSSTTLTTVARRNASIVSPPFALPMTQPFTPPHRSESYESYGKNCTWPNNNPFLNMVNNTMMMPYGYINGQHFRDCYAAPSIAASQAVPSIGGFQISPPLPELHDFLRLNGYNIAAARMFPFEGAAPINHEANDSPSNE*