AlfalfaGEDB | MsaG034415

M. sativa ssp. caerulea / MsaG034415

KEGG: K09419
GO: GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00447.20

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034415	XP_013453094.1	82.051	351	30	4	1	324	1	345	0.0	513

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034415	sp\|Q9LV52\|HSFC1_ARATH	48.113	212	58	4	8	189	14	203	1.38e-53	181

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034415	tr\|A0A072UBW9\|A0A072UBW9_MEDTR	82.051	351	30	4	1	324	1	345	0.0	513

TFs/TRs:

Gene ID	Type	Classification
MsaG034415	TF	HSF

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000157	MsaG034415	0.809703	2.834692e-50	4.806264e-48
MsaG000431	MsaG034415	0.847379	2.265379e-59	1.123543e-56
MsaG000519	MsaG034415	0.808110	6.189794e-50	1.009986e-47
MsaG000640	MsaG034415	0.814706	2.323143e-51	4.457586e-49
MsaG000832	MsaG034415	0.806807	1.166528e-49	1.845126e-47
MsaG001178	MsaG034415	0.819836	1.649534e-52	3.611996e-50
MsaG001237	MsaG034415	0.801946	1.188269e-48	1.678935e-46
MsaG001248	MsaG034415	0.809310	3.438957e-50	5.775502e-48
MsaG001454	MsaG034415	0.821908	5.532056e-53	1.279766e-50
MsaG001531	MsaG034415	0.829972	6.856969e-55	1.982931e-52
MsaG001727	MsaG034415	0.827879	2.190723e-54	5.970561e-52
MsaG001859	MsaG034415	0.814243	2.937776e-51	5.571883e-49
MsaG002009	MsaG034415	0.801063	1.799622e-48	2.492174e-46
MsaG002013	MsaG034415	0.833055	1.203562e-55	3.805481e-53
MsaG003210	MsaG034415	0.828294	1.742319e-54	4.803963e-52
MsaG003276	MsaG034415	0.803928	4.649544e-49	6.875860e-47
MsaG003468	MsaG034415	0.811121	1.406048e-50	2.467702e-48
MsaG004282	MsaG034415	0.809909	2.561205e-50	4.364222e-48
MsaG004373	MsaG034415	0.840225	1.827538e-57	7.184618e-55
MsaG005154	MsaG034415	0.806937	1.095152e-49	1.737524e-47
MsaG005401	MsaG034415	0.804602	3.370274e-49	5.062449e-47
MsaG005435	MsaG034415	0.819938	1.563182e-52	3.432381e-50
MsaG005438	MsaG034415	0.815065	1.935950e-51	3.748467e-49
MsaG005506	MsaG034415	0.837239	1.071593e-56	3.839492e-54
MsaG005508	MsaG034415	0.836258	1.900719e-56	6.611864e-54
MsaG005510	MsaG034415	0.809177	3.671180e-50	6.146079e-48
MsaG005839	MsaG034415	0.808137	6.109179e-50	9.974642e-48
MsaG005864	MsaG034415	0.838183	6.149341e-57	2.268093e-54
MsaG005902	MsaG034415	0.808073	6.302719e-50	1.027494e-47
MsaG006074	MsaG034415	0.809692	2.850621e-50	4.831951e-48
MsaG006331	MsaG034415	0.832139	2.026399e-55	6.238722e-53
MsaG006468	MsaG034415	0.804933	2.876888e-49	4.354724e-47
MsaG006500	MsaG034415	0.801590	1.405222e-48	1.969423e-46
MsaG006529	MsaG034415	0.808215	5.880462e-50	9.619319e-48
MsaG006777	MsaG034415	0.815514	1.539690e-51	3.015301e-49
MsaG007066	MsaG034415	0.822315	4.456592e-53	1.042313e-50
MsaG007353	MsaG034415	0.808231	5.836071e-50	9.550370e-48
MsaG007387	MsaG034415	0.826564	4.509468e-54	1.184572e-51
MsaG007423	MsaG034415	0.802348	9.834397e-49	1.402366e-46
MsaG007428	MsaG034415	0.811851	9.771640e-51	1.746038e-48
MsaG007570	MsaG034415	0.816545	9.087879e-52	1.827048e-49
MsaG007914	MsaG034415	0.806036	1.692730e-49	2.629157e-47
MsaG008229	MsaG034415	0.800914	1.929019e-48	2.662469e-46
MsaG008218	MsaG034415	0.803379	6.036054e-49	8.813607e-47
MsaG008461	MsaG034415	0.804588	3.392893e-49	5.094800e-47
MsaG008536	MsaG034415	0.812663	6.512260e-51	1.187202e-48
MsaG008552	MsaG034415	0.824605	1.306283e-53	3.250657e-51
MsaG008996	MsaG034415	0.804752	3.137251e-49	4.728952e-47
MsaG010053	MsaG034415	0.806800	1.170537e-49	1.851170e-47
MsaG010394	MsaG034415	0.842102	5.897309e-58	2.460341e-55
MsaG010894	MsaG034415	0.853695	3.880121e-61	2.392602e-58
MsaG010906	MsaG034415	0.820035	1.485892e-52	3.271114e-50
MsaG010899	MsaG034415	0.820456	1.190955e-52	2.651257e-50
MsaG011080	MsaG034415	0.818688	3.002120e-52	6.378720e-50
MsaG011275	MsaG034415	0.804921	2.893352e-49	4.378462e-47
MsaG012212	MsaG034415	0.822067	5.084337e-53	1.181198e-50
MsaG012382	MsaG034415	0.820192	1.368246e-52	3.024796e-50
MsaG012422	MsaG034415	0.846134	4.943928e-59	2.351940e-56
MsaG012943	MsaG034415	0.812516	7.009998e-51	1.273336e-48
MsaG013644	MsaG034415	0.831804	2.448978e-55	7.466821e-53
MsaG013909	MsaG034415	0.808317	5.595076e-50	9.174838e-48
MsaG013993	MsaG034415	0.810173	2.248032e-50	3.855169e-48
MsaG014953	MsaG034415	0.833446	9.629832e-56	3.080079e-53
MsaG015705	MsaG034415	0.836731	1.442233e-56	5.088620e-54
MsaG016149	MsaG034415	0.821842	5.727974e-53	1.322781e-50
MsaG016724	MsaG034415	0.835225	3.461835e-56	1.167390e-53
MsaG016685	MsaG034415	0.808231	5.835614e-50	9.549661e-48
MsaG017058	MsaG034415	0.830093	6.411117e-55	1.860376e-52
MsaG017209	MsaG034415	0.824086	1.727623e-53	4.238859e-51
MsaG017329	MsaG034415	0.816929	7.457724e-52	1.514298e-49
MsaG017820	MsaG034415	0.812234	8.071222e-51	1.455764e-48
MsaG018248	MsaG034415	0.825274	9.100038e-54	2.306379e-51
MsaG018380	MsaG034415	0.828514	1.542907e-54	4.280714e-52
MsaG018447	MsaG034415	0.834841	4.322737e-56	1.441091e-53
MsaG018553	MsaG034415	0.804399	3.712803e-49	5.550985e-47
MsaG019076	MsaG034415	0.801906	1.210799e-48	1.709256e-46
MsaG019731	MsaG034415	0.817051	7.006890e-52	1.427216e-49
MsaG020314	MsaG034415	0.809376	3.330052e-50	5.601651e-48
MsaG020874	MsaG034415	0.827255	3.087174e-54	8.267711e-52
MsaG020875	MsaG034415	0.808151	6.067232e-50	9.909542e-48
MsaG021405	MsaG034415	0.816462	9.484248e-52	1.902674e-49
MsaG021575	MsaG034415	0.825467	8.192376e-54	2.087432e-51
MsaG021668	MsaG034415	0.833772	7.991720e-56	2.580692e-53
MsaG021863	MsaG034415	0.806633	1.269115e-49	1.999262e-47
MsaG021896	MsaG034415	0.821124	8.376496e-53	1.897939e-50
MsaG022465	MsaG034415	0.807660	7.707861e-50	1.244136e-47
MsaG023339	MsaG034415	0.825244	9.248876e-54	2.342171e-51
MsaG023743	MsaG034415	0.812747	6.243925e-51	1.140684e-48
MsaG023744	MsaG034415	0.804015	4.460318e-49	6.609533e-47
MsaG023683	MsaG034415	0.810392	2.017279e-50	3.478170e-48
MsaG023884	MsaG034415	0.812666	6.500980e-51	1.185252e-48
MsaG024228	MsaG034415	0.808222	5.862413e-50	9.591193e-48
MsaG024304	MsaG034415	0.804276	3.938313e-49	5.871472e-47
MsaG026985	MsaG034415	0.821638	6.382267e-53	1.465937e-50
MsaG027211	MsaG034415	0.813114	5.192043e-51	9.572474e-49
MsaG027204	MsaG034415	0.800376	2.480977e-48	3.383020e-46
MsaG028374	MsaG034415	0.804983	2.808510e-49	4.256193e-47
MsaG028375	MsaG034415	0.824088	1.725683e-53	4.234396e-51
MsaG028351	MsaG034415	0.828918	1.233308e-54	3.460528e-52
MsaG028456	MsaG034415	0.816717	8.318863e-52	1.679864e-49
MsaG028457	MsaG034415	0.819646	1.822198e-52	3.970037e-50
MsaG028501	MsaG034415	0.805528	2.162307e-49	3.318562e-47
MsaG028503	MsaG034415	0.816899	7.576159e-52	1.537108e-49
MsaG028716	MsaG034415	0.802411	9.544857e-49	1.363050e-46
MsaG028979	MsaG034415	0.821461	7.012409e-53	1.603028e-50
MsaG029204	MsaG034415	0.817983	4.329628e-52	9.033127e-50
MsaG029899	MsaG034415	0.819006	2.544293e-52	5.451317e-50
MsaG030010	MsaG034415	0.812452	7.237822e-51	1.312613e-48
MsaG030084	MsaG034415	0.813957	3.395085e-51	6.393255e-49
MsaG030471	MsaG034415	0.821389	7.284129e-53	1.662017e-50
MsaG030501	MsaG034415	0.813202	4.966566e-51	9.177052e-49
MsaG031295	MsaG034415	0.824944	1.087874e-53	2.732382e-51
MsaG033301	MsaG034415	0.812732	6.289998e-51	1.148670e-48
MsaG033492	MsaG034415	0.805701	1.989146e-49	3.065301e-47
MsaG033693	MsaG034415	0.805457	2.237397e-49	3.428194e-47
MsaG033831	MsaG034415	0.827961	2.094067e-54	5.720168e-52
MsaG034287	MsaG034415	0.803334	6.165901e-49	8.993752e-47
MsaG034337	MsaG034415	0.803925	4.655092e-49	6.883698e-47
MsaG034415	MsaG034827	0.830913	4.048020e-55	1.202532e-52
MsaG034415	MsaG034828	0.819474	1.993155e-52	4.323215e-50
MsaG034415	MsaG034829	0.832931	1.291679e-55	4.069365e-53
MsaG034415	MsaG035057	0.802185	1.061640e-48	1.508196e-46
MsaG034415	MsaG035511	0.827786	2.305819e-54	6.267840e-52
MsaG034415	MsaG035669	0.833332	1.027689e-55	3.275912e-53
MsaG034415	MsaG038421	0.833210	1.101899e-55	3.500146e-53
MsaG034415	MsaG038986	0.801709	1.328695e-48	1.867213e-46
MsaG034415	MsaG039724	0.803157	6.705243e-49	9.740707e-47
MsaG034415	MsaG039739	0.809577	3.016512e-50	5.099211e-48
MsaG034415	MsaG040077	0.816788	8.018557e-52	1.622223e-49
MsaG034415	MsaG040980	0.822007	5.247714e-53	1.217239e-50
MsaG034415	MsaG040982	0.806929	1.099344e-49	1.743856e-47
MsaG034415	MsaG041116	0.814087	3.179137e-51	6.006055e-49
MsaG034415	MsaG041271	0.813501	4.273473e-51	7.955516e-49
MsaG034415	MsaG041517	0.819089	2.437490e-52	5.233851e-50
MsaG034415	MsaG041900	0.802418	9.514732e-49	1.358955e-46
MsaG034415	MsaG041901	0.812149	8.423784e-51	1.516150e-48
MsaG034415	MsaG043659	0.802193	1.057972e-48	1.503245e-46
MsaG034415	MsaG043663	0.821517	6.807617e-53	1.558552e-50
MsaG034415	MsaG043665	0.803395	5.989827e-49	8.749370e-47
MsaG034415	MsaG044352	0.829084	1.124521e-54	3.170238e-52
MsaG034415	MsaG044354	0.832603	1.557382e-55	4.859377e-53
MsaG034415	MsaG044376	0.812160	8.376101e-51	1.507990e-48
MsaG034415	MsaG044606	0.822584	3.862106e-53	9.098203e-51
MsaG034415	MsaG045021	0.815258	1.755009e-51	3.414862e-49
MsaG034415	MsaG045125	0.814810	2.203865e-51	4.239946e-49
MsaG034415	MsaG045222	0.819940	1.562191e-52	3.430310e-50
MsaG034415	MsaG046053	0.835239	3.434115e-56	1.158486e-53
MsaG034415	MsaG046423	0.813285	4.763511e-51	8.819911e-49
MsaG034415	MsaG046383	0.817882	4.561991e-52	9.492969e-50
MsaG034415	MsaG046523	0.815111	1.891279e-51	3.666146e-49
MsaG034415	MsaG046630	0.829789	7.596600e-55	2.185262e-52
MsaG034415	MsaG046816	0.840049	2.030124e-57	7.937507e-55
MsaG034415	MsaG047054	0.812409	7.395820e-51	1.339830e-48
MsaG034415	MsaG007590	0.844349	1.494111e-58	6.701168e-56
MsaG034415	MsaG008796	0.830950	3.964424e-55	1.178943e-52
MsaG034415	MsaG010026	0.815289	1.727451e-51	3.363789e-49
MsaG034415	MsaG009037	0.821609	6.483309e-53	1.487945e-50
MsaG034415	MsaG013257	0.803567	5.519090e-49	8.093897e-47
MsaG034415	MsaG014180	0.806059	1.674038e-49	2.601558e-47
MsaG034415	MsaG012091	0.814976	2.025139e-51	3.912476e-49
MsaG034415	MsaG016847	0.824503	1.380309e-53	3.425403e-51
MsaG034415	MsaG012695	0.802830	7.829778e-49	1.128856e-46
MsaG034415	MsaG020796	0.818461	3.379124e-52	7.137416e-50
MsaG034415	MsaG018864	0.806794	1.174076e-49	1.856500e-47
MsaG034415	MsaG032708	0.806981	1.072066e-49	1.702687e-47
MsaG034415	MsaG031280	0.818933	2.643275e-52	5.652512e-50
MsaG034415	MsaG031221	0.819275	2.211709e-52	4.772326e-50
MsaG034415	MsaG032931	0.811465	1.184751e-50	2.096958e-48
MsaG034415	MsaG032980	0.828013	2.034194e-54	5.564851e-52
MsaG034415	MsaG032243	0.834944	4.071401e-56	1.361481e-53
MsaG034415	MsaG032473	0.801618	1.386525e-48	1.944490e-46
MsaG034415	MsaG033582	0.803940	4.622593e-49	6.837979e-47
MsaG034415	MsaG038765	0.824160	1.660291e-53	4.081755e-51
MsaG034415	MsaG037384	0.843595	2.374375e-58	1.039180e-55
MsaG034415	MsaG037729	0.826945	3.660096e-54	9.717439e-52
MsaG034415	MsaG037161	0.816615	8.764637e-52	1.765243e-49
MsaG034415	MsaG035677	0.807292	9.218027e-50	1.474860e-47
MsaG034415	MsaG039501	0.801394	1.540669e-48	2.149710e-46
MsaG034415	MsaG036984	0.813732	3.802336e-51	7.119810e-49
MsaG034415	MsaG042295	0.808250	5.783061e-50	9.467969e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034415	MtrunA17_Chr6g0485571	82.051	351	30	4	1	324	1	345	0.0	513
MsaG034415	MtrunA17_Chr5g0410881	34.298	242	117	6	3	207	24	260	4.28e-35	133
MsaG034415	MtrunA17_Chr3g0135831	33.333	204	109	2	11	187	46	249	8.24e-31	119
MsaG034415	MtrunA17_Chr1g0204741	31.646	237	130	5	11	218	40	273	9.92e-30	115
MsaG034415	MtrunA17_Chr7g0260331	31.602	231	123	5	11	208	49	277	2.03e-29	115
MsaG034415	MtrunA17_Chr4g0039891	33.019	212	107	5	6	182	7	218	8.89e-29	115
MsaG034415	MtrunA17_Chr4g0071051	34.946	186	101	3	11	176	101	286	3.76e-26	107
MsaG034415	MtrunA17_Chr6g0467041	33.654	208	110	5	9	188	20	227	7.56e-24	99.8
MsaG034415	MtrunA17_Chr8g0375041	61.765	68	26	0	3	70	1	68	2.46e-23	96.7
MsaG034415	MtrunA17_Chr8g0392001	35.204	196	93	4	9	170	20	215	4.16e-23	98.2
MsaG034415	MtrunA17_Chr8g0379701	31.034	203	105	5	9	182	10	206	2.38e-22	96.7
MsaG034415	MtrunA17_Chr8g0378061	32.093	215	104	5	12	191	23	230	1.68e-20	92.0
MsaG034415	MtrunA17_Chr2g0330821	30.102	196	100	3	10	175	78	266	1.78e-20	90.9
MsaG034415	MtrunA17_Chr1g0203601	56.522	69	30	0	2	70	9	77	2.08e-20	89.7
MsaG034415	MtrunA17_Chr5g0402291	55.882	68	30	0	3	70	1	68	1.29e-19	87.4
MsaG034415	MtrunA17_Chr5g0397881	54.545	66	30	0	5	70	18	83	1.61e-19	88.2
MsaG034415	MtrunA17_Chr5g0441531	57.576	66	28	0	5	70	19	84	1.61e-19	86.3
MsaG034415	MtrunA17_Chr2g0284481	31.892	185	88	3	9	159	13	193	2.06e-19	87.8
MsaG034415	MtrunA17_Chr3g0134031	58.730	63	26	0	8	70	21	83	4.88e-19	86.7
MsaG034415	MtrunA17_Chr1g0185131	29.911	224	102	5	11	196	32	238	7.04e-19	85.9
MsaG034415	MtrunA17_Chr7g0257331	54.098	61	28	0	10	70	21	81	1.08e-18	83.6
MsaG034415	MtrunA17_Chr1g0179321	51.429	70	34	0	1	70	39	108	2.82e-18	79.0
MsaG034415	MtrunA17_Chr6g0472421	51.515	66	32	0	5	70	27	92	5.97e-17	80.5
MsaG034415	MtrunA17_Chr4g0047421	49.231	65	29	1	10	70	32	96	2.17e-14	71.2
MsaG034415	MtrunA17_Chr4g0023771	50.000	62	31	0	7	68	11	72	5.94e-14	67.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034415	AT3G24520.1	48.113	212	58	4	8	189	14	203	1.41e-54	181
MsaG034415	AT4G17750.1	36.777	242	104	6	6	203	47	283	2.71e-34	131
MsaG034415	AT1G32330.2	36.406	217	97	6	6	181	32	248	2.67e-32	125
MsaG034415	AT1G32330.1	34.562	217	101	4	6	181	32	248	2.99e-32	125
MsaG034415	AT3G51910.1	32.692	208	115	5	7	193	25	228	5.23e-30	115
MsaG034415	AT2G26150.1	34.146	205	104	4	11	184	44	248	1.85e-29	115
MsaG034415	AT2G26150.4	34.146	205	104	4	11	184	44	248	1.85e-29	115
MsaG034415	AT3G22830.1	30.677	251	135	7	11	224	61	309	4.48e-29	115
MsaG034415	AT3G63350.1	34.359	195	100	5	10	177	27	220	6.42e-28	110
MsaG034415	AT3G02990.1	34.615	208	102	4	9	182	21	228	1.26e-27	112
MsaG034415	AT5G16820.1	33.962	212	104	5	7	182	23	234	3.34e-27	111
MsaG034415	AT5G16820.2	33.962	212	104	5	7	182	23	234	3.34e-27	111
MsaG034415	AT5G03720.2	31.250	224	117	5	5	191	49	272	4.42e-27	110
MsaG034415	AT5G03720.1	31.250	224	117	5	5	191	49	272	4.42e-27	110
MsaG034415	AT1G67970.1	30.729	192	101	5	9	170	17	206	4.11e-25	104
MsaG034415	AT5G54070.1	30.270	185	107	4	8	172	68	250	2.22e-24	101
MsaG034415	AT5G43840.1	31.214	173	98	4	10	165	18	186	9.26e-21	90.9
MsaG034415	AT1G46264.1	58.730	63	26	0	8	70	31	93	3.68e-19	87.4
MsaG034415	AT4G13980.1	30.256	195	112	4	12	182	24	218	4.78e-19	87.8
MsaG034415	AT5G45710.3	28.472	288	161	8	3	251	1	282	4.88e-19	87.0
MsaG034415	AT5G45710.1	28.472	288	161	8	3	251	1	282	4.88e-19	87.0
MsaG034415	AT4G18880.1	29.730	259	144	4	9	232	13	268	6.51e-19	87.0
MsaG034415	AT4G11660.1	56.061	66	29	0	5	70	53	118	1.02e-18	86.3
MsaG034415	AT4G36990.1	51.515	66	32	0	5	70	8	73	2.72e-18	84.0
MsaG034415	AT2G41690.1	56.667	60	26	0	11	70	40	99	3.79e-17	80.1
MsaG034415	AT5G62020.1	51.515	66	32	0	5	70	17	82	1.04e-16	79.7

Find 86 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TAGAAGTGATAGTAGTAAAA+AGG	0.204760	6:+112135697	MsaT034415.1:CDS
AAGAGAGTGAGAGAATTCTA+AGG	0.267094	6:-112134560	None:intergenic
TGGCTCCGGTGGGTGGTTGG+TGG	0.288941	6:+112135573	MsaT034415.1:CDS
GCTCCGGTGGGTGGTTGGTG+GGG	0.299967	6:+112135575	MsaT034415.1:CDS
CCACCTTCTAACAACGAAAA+AGG	0.302300	6:-112135776	None:intergenic
AAGAAACATGTTGGTGGTAT+TGG	0.321921	6:+112135053	MsaT034415.1:CDS
TTGATAAGGTTATCTGTGTT+TGG	0.326130	6:-112134499	None:intergenic
AGTTTGGACAGATGGGTTAT+AGG	0.339452	6:+112135606	MsaT034415.1:CDS
CTCCGGTGGGTGGTTGGTGG+GGG	0.345456	6:+112135576	MsaT034415.1:CDS
ATTTGTTGAAGAACATAGTT+AGG	0.347369	6:+112135030	MsaT034415.1:intron
GGGCATGGCGGTGGCAAATT+CGG	0.364204	6:+112135439	MsaT034415.1:CDS
ACGATGAAACTGTTGTTAGA+TGG	0.404226	6:-112134529	None:intergenic
GGCTCCGGTGGGTGGTTGGT+GGG	0.407249	6:+112135574	MsaT034415.1:CDS
CGGCGCCGGCGCCGATGATG+TGG	0.410102	6:+112135666	MsaT034415.1:CDS
GCCGGTGTTGTCTCCGGCGC+CGG	0.429564	6:+112135652	MsaT034415.1:CDS
CATGTTGGTGGTATTGGAAA+TGG	0.433048	6:+112135059	MsaT034415.1:CDS
TTCGGTGAAGATGGAGTTTG+AGG	0.446034	6:+112135457	MsaT034415.1:CDS
AGTATTCTAGACAAAATTTG+AGG	0.453954	6:-112135305	None:intergenic
TGTCGGAAATTTCAATGAAA+TGG	0.454809	6:+112135724	MsaT034415.1:CDS
GTCAACTTCCTCGGAGTCAT+CGG	0.460070	6:+112135418	MsaT034415.1:CDS
TAGATGGGCCCCACTTGATA+AGG	0.462941	6:-112134513	None:intergenic
CCACCTCCTGCGGTGGTGCA+CGG	0.463396	6:-112135553	None:intergenic
ATGTCGTCCTCGCCGGAGCT+TGG	0.468090	6:+112135509	MsaT034415.1:CDS
CTTGTGTTCTTAAATGGGAA+TGG	0.469203	6:+112134420	None:intergenic
TTTAGAAGAAGATGAAGCTA+TGG	0.473347	6:+112135148	MsaT034415.1:CDS
TTGTTGTGTTTGAAGAAAAG+AGG	0.474502	6:-112134586	None:intergenic
GGAGTCATCGGGCATGGCGG+TGG	0.474769	6:+112135430	MsaT034415.1:CDS
CACATCATCGGCGCCGGCGC+CGG	0.474975	6:-112135665	None:intergenic
CAGGAGGTGGCTCCGGTGGG+TGG	0.478583	6:+112135566	MsaT034415.1:CDS
ACCGCAGGAGGTGGCTCCGG+TGG	0.478779	6:+112135562	MsaT034415.1:CDS
GGCGCCGGCGCCGATGATGT+GGG	0.479475	6:+112135667	MsaT034415.1:CDS
GTTGATATCTCCGGTGGCTA+AGG	0.482556	6:+112135373	MsaT034415.1:CDS
GGTGGCTAAGGCGGCCGTGA+CGG	0.483148	6:+112135385	MsaT034415.1:CDS
CCGTGCACCACCGCAGGAGG+TGG	0.485061	6:+112135553	MsaT034415.1:CDS
ACCACCGCAGGAGGTGGCTC+CGG	0.485869	6:+112135559	MsaT034415.1:CDS
ACGGATGCCGGTGTTGTCTC+CGG	0.489094	6:+112135646	MsaT034415.1:CDS
AGGTGGCTCCGGTGGGTGGT+TGG	0.489246	6:+112135570	MsaT034415.1:CDS
AATTTAGAAGAAGAGCTTCA+AGG	0.492990	6:+112135206	MsaT034415.1:CDS
GCAGATGGAGTTTGGACAGA+TGG	0.497763	6:+112135598	MsaT034415.1:CDS
CCGCAGGAGGTGGCTCCGGT+GGG	0.505617	6:+112135563	MsaT034415.1:CDS
TCAACTTCCTCGGAGTCATC+GGG	0.508311	6:+112135419	MsaT034415.1:CDS
CGATGAAACTGTTGTTAGAT+GGG	0.511534	6:-112134528	None:intergenic
TGACGTCGTTGCCGCCGTCA+CGG	0.512284	6:-112135399	None:intergenic
AGAAGATGAAGCTATGGTGA+TGG	0.518088	6:+112135154	MsaT034415.1:CDS
GGCAACGACGTCAACTTCCT+CGG	0.518118	6:+112135409	MsaT034415.1:CDS
CAGATGGAGTTTGGACAGAT+GGG	0.518140	6:+112135599	MsaT034415.1:CDS
GAAAAGACCACAACAAATGA+TGG	0.518696	6:+112135256	MsaT034415.1:CDS
GGCTAAGGCGGCCGTGACGG+CGG	0.526324	6:+112135388	MsaT034415.1:CDS
GAGGAAGATGAGGTAACGGT+TGG	0.526402	6:+112135476	MsaT034415.1:CDS
GATGGAGTTTGAGGAAGATG+AGG	0.529799	6:+112135466	MsaT034415.1:CDS
ACCGGAGCCACCTCCTGCGG+TGG	0.537226	6:-112135560	None:intergenic
TAACATGATGTCGTCCTCGC+CGG	0.538658	6:+112135502	MsaT034415.1:CDS
TTCCTCGGAGTCATCGGGCA+TGG	0.539288	6:+112135424	MsaT034415.1:CDS
GAAACGACGGTTGATATCTC+CGG	0.543586	6:+112135364	MsaT034415.1:CDS
GGTGGCAAATTCGGTGAAGA+TGG	0.545610	6:+112135448	MsaT034415.1:CDS
GTCACGGCCGCCTTAGCCAC+CGG	0.545636	6:-112135383	None:intergenic
TCAATTTCAAAACCAAGCTC+CGG	0.549174	6:-112135521	None:intergenic
TCACCCCACATCATCGGCGC+CGG	0.555196	6:-112135671	None:intergenic
GATATCTCCGGTGGCTAAGG+CGG	0.568045	6:+112135376	MsaT034415.1:CDS
TTGTGAAGTTCCACGGATGC+CGG	0.574030	6:+112135634	MsaT034415.1:CDS
CTATTCTCACCCCACATCAT+CGG	0.575525	6:-112135677	None:intergenic
TTTGCACCGTGCACCACCGC+AGG	0.578267	6:+112135547	MsaT034415.1:CDS
AGAGAGTGAGAGAATTCTAA+GGG	0.578397	6:-112134559	None:intergenic
GGAGACAACACCGGCATCCG+TGG	0.579394	6:-112135644	None:intergenic
GCACCGTGCACCACCGCAGG+AGG	0.584699	6:+112135550	MsaT034415.1:CDS
GGCGTGATTGTGAAGTTCCA+CGG	0.595018	6:+112135627	MsaT034415.1:CDS
CCCACCGGAGCCACCTCCTG+CGG	0.595130	6:-112135563	None:intergenic
GTTTGAGGAAGATGAGGTAA+CGG	0.595921	6:+112135472	MsaT034415.1:CDS
ACACAGATAACCTTATCAAG+TGG	0.597268	6:+112134503	MsaT034415.1:CDS
CACAGATAACCTTATCAAGT+GGG	0.597725	6:+112134504	MsaT034415.1:CDS
GCCGGCGCCGGAGACAACAC+CGG	0.598769	6:-112135653	None:intergenic
GCGCCGGCGCCGATGATGTG+GGG	0.609629	6:+112135668	MsaT034415.1:CDS
TTCAAAACCAAGCTCCGGCG+AGG	0.611782	6:-112135516	None:intergenic
GTTAGGAAGAAACATGTTGG+TGG	0.621782	6:+112135047	MsaT034415.1:CDS
CGCCATGCCCGATGACTCCG+AGG	0.624450	6:-112135426	None:intergenic
AAATTTCAATGAAATGGCGG+CGG	0.625567	6:+112135730	MsaT034415.1:CDS
CATTATGAAGACATACCACA+TGG	0.631169	6:+112134468	MsaT034415.1:CDS
TGTTTGGTTCATTAACCATG+TGG	0.639928	6:-112134483	None:intergenic
CGGAAATTTCAATGAAATGG+CGG	0.648772	6:+112135727	MsaT034415.1:CDS
ATAGTTAGGAAGAAACATGT+TGG	0.649558	6:+112135044	MsaT034415.1:CDS
ACGACGGTTGATATCTCCGG+TGG	0.680566	6:+112135367	MsaT034415.1:CDS
CTCGGAGTCATCGGGCATGG+CGG	0.681310	6:+112135427	MsaT034415.1:CDS
TGGTATGTCTTCATAATGAA+CGG	0.681423	6:-112134463	None:intergenic
TTGTTGATAACAAGAAACGA+CGG	0.686402	6:+112135351	MsaT034415.1:CDS
ACAGATAACCTTATCAAGTG+GGG	0.700643	6:+112134505	MsaT034415.1:CDS
TTGGTGGTATTGGAAATGGA+AGG	0.715173	6:+112135063	MsaT034415.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	112134433	112135805	112134433	ID=MsaG034415
Chr6	mRNA	112134433	112135805	112134433	ID=MsaT034415.1;Parent=MsaG034415
Chr6	exon	112134433	112134642	112134433	ID=MsaT034415.1.exon1;Parent=MsaT034415.1
Chr6	CDS	112134433	112134642	112134433	ID=cds.MsaT034415.1;Parent=MsaT034415.1
Chr6	exon	112135041	112135805	112135041	ID=MsaT034415.1.exon2;Parent=MsaT034415.1
Chr6	CDS	112135041	112135805	112135041	ID=cds.MsaT034415.1;Parent=MsaT034415.1

Gene Sequence

>MsaT034415.1

ATGGGAATGGAGCAAAACAACGTGATTGCACCGTTCATTATGAAGACATACCACATGGTTAATGAACCAAACACAGATAACCTTATCAAGTGGGGCCCATCTAACAACAGTTTCATCGTTCTTGATCCCTTAGAATTCTCTCACTCTCTTCTTCCTCTTTTCTTCAAACACAACAATTTCTCAAGCTTTGTTCGTCAACTCAACACTTATAACATAGTTAGGAAGAAACATGTTGGTGGTATTGGAAATGGAAGGAATAATAATAATAATAATTATTATAACAATAATAACTATTTTAATGAGGTGAAGTTTGAAGATTTAGAAGAAGATGAAGCTATGGTGATGGAAATAGCAAAGTTGAAAGAAGAACAAAGAAATTTAGAAGAAGAGCTTCAAGGAATGAACAAAAGATTAGAAACAACTGAGAAAAGACCACAACAAATGATGGCTTTTTTATGTAATGTCGTTGAAGATCCTCAAATTTTGTCTAGAATACTAAATGAAAGAGAGAGTAAAAAATTTGTTGATAACAAGAAACGACGGTTGATATCTCCGGTGGCTAAGGCGGCCGTGACGGCGGCAACGACGTCAACTTCCTCGGAGTCATCGGGCATGGCGGTGGCAAATTCGGTGAAGATGGAGTTTGAGGAAGATGAGGTAACGGTTGGTAATAACATGATGTCGTCCTCGCCGGAGCTTGGTTTTGAAATTGATTATTTGCACCGTGCACCACCGCAGGAGGTGGCTCCGGTGGGTGGTTGGTGGGGGCAGATGGAGTTTGGACAGATGGGTTATAGGCGTGATTGTGAAGTTCCACGGATGCCGGTGTTGTCTCCGGCGCCGGCGCCGATGATGTGGGGTGAGAATAGAAGTGATAGTAGTAAAAAGGGGGGTGTCGGAAATTTCAATGAAATGGCGGCGGAAAATAGTAAGTTGCCACCTTATCCTTTTTCGTTGTTAGAAGGTGGCTTTTAG

Protein sequence

>MsaT034415.1

MGMEQNNVIAPFIMKTYHMVNEPNTDNLIKWGPSNNSFIVLDPLEFSHSLLPLFFKHNNFSSFVRQLNTYNIVRKKHVGGIGNGRNNNNNNYYNNNNYFNEVKFEDLEEDEAMVMEIAKLKEEQRNLEEELQGMNKRLETTEKRPQQMMAFLCNVVEDPQILSRILNERESKKFVDNKKRRLISPVAKAAVTAATTSTSSESSGMAVANSVKMEFEEDEVTVGNNMMSSSPELGFEIDYLHRAPPQEVAPVGGWWGQMEFGQMGYRRDCEVPRMPVLSPAPAPMMWGENRSDSSKKGGVGNFNEMAAENSKLPPYPFSLLEGGF*