Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG034434 | XP_003620600.2 | 94.127 | 630 | 13 | 2 | 1 | 630 | 1 | 606 | 0.0 | 1209 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG034434 | sp|Q9SZD1|TCX5_ARATH | 56.274 | 526 | 187 | 15 | 43 | 537 | 21 | 534 | 0.0 | 534 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG034434 | tr|A0A0C3VZM0|A0A0C3VZM0_MEDTR | 94.127 | 630 | 13 | 2 | 1 | 630 | 1 | 606 | 0.0 | 1209 |
Gene ID | Type | Classification |
---|---|---|
MsaG034434 | TF | CPP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG034434 | MtrunA17_Chr6g0485811 | 94.127 | 630 | 13 | 2 | 1 | 630 | 1 | 606 | 0.0 | 1209 |
MsaG034434 | MtrunA17_Chr8g0390351 | 65.944 | 646 | 154 | 12 | 1 | 631 | 1 | 595 | 0.0 | 791 |
MsaG034434 | MtrunA17_Chr3g0139951 | 48.000 | 350 | 157 | 11 | 51 | 385 | 61 | 400 | 9.05e-86 | 274 |
MsaG034434 | MtrunA17_Chr5g0394661 | 42.073 | 164 | 92 | 2 | 96 | 258 | 456 | 617 | 1.18e-30 | 128 |
MsaG034434 | MtrunA17_Chr1g0149101 | 47.727 | 132 | 60 | 3 | 130 | 255 | 498 | 626 | 4.62e-29 | 123 |
MsaG034434 | MtrunA17_Chr1g0205031 | 38.211 | 123 | 67 | 3 | 141 | 258 | 416 | 534 | 1.48e-15 | 80.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG034434 | AT4G29000.1 | 56.274 | 526 | 187 | 15 | 43 | 537 | 21 | 534 | 0.0 | 534 |
MsaG034434 | AT2G20110.3 | 51.976 | 506 | 191 | 13 | 45 | 537 | 21 | 487 | 1.35e-165 | 484 |
MsaG034434 | AT2G20110.1 | 51.976 | 506 | 191 | 13 | 45 | 537 | 21 | 487 | 2.70e-165 | 485 |
MsaG034434 | AT2G20110.2 | 51.267 | 513 | 191 | 14 | 45 | 537 | 21 | 494 | 2.66e-162 | 478 |
MsaG034434 | AT5G25790.1 | 42.152 | 446 | 199 | 12 | 90 | 524 | 51 | 448 | 9.79e-104 | 323 |
MsaG034434 | AT5G25790.2 | 42.152 | 446 | 199 | 12 | 90 | 524 | 51 | 448 | 2.13e-103 | 323 |
MsaG034434 | AT5G25790.3 | 41.928 | 446 | 196 | 13 | 90 | 524 | 51 | 444 | 4.53e-101 | 315 |
MsaG034434 | AT3G16160.1 | 30.935 | 417 | 180 | 13 | 113 | 518 | 43 | 362 | 3.17e-42 | 157 |
MsaG034434 | AT3G22760.2 | 42.289 | 201 | 83 | 7 | 93 | 266 | 147 | 341 | 7.18e-36 | 141 |
MsaG034434 | AT3G22760.1 | 42.289 | 201 | 83 | 7 | 93 | 266 | 270 | 464 | 1.33e-35 | 142 |
MsaG034434 | AT4G14770.2 | 35.556 | 225 | 120 | 6 | 52 | 259 | 269 | 485 | 1.85e-33 | 136 |
MsaG034434 | AT4G14770.1 | 35.556 | 225 | 120 | 6 | 52 | 259 | 289 | 505 | 1.88e-33 | 136 |
MsaG034434 | AT3G22780.1 | 34.016 | 244 | 135 | 6 | 52 | 274 | 312 | 550 | 1.91e-33 | 136 |
MsaG034434 | AT4G14770.3 | 35.556 | 225 | 120 | 6 | 52 | 259 | 270 | 486 | 1.95e-33 | 136 |
MsaG034434 | AT3G04850.1 | 46.512 | 129 | 68 | 1 | 130 | 257 | 453 | 581 | 2.28e-30 | 127 |
Find 165 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGAGGGCTGCTCGCAATTT+TGG | 0.046264 | 6:-112496857 | None:intergenic |
TTGCACTGCCTTTGCTTCTT+TGG | 0.171967 | 6:-112496039 | None:intergenic |
TCCGGATGAACAACATTCTT+TGG | 0.229319 | 6:-112494593 | None:intergenic |
ATTGATACTGTAGCTGAAAA+TGG | 0.265617 | 6:+112500356 | MsaT034434.1:CDS |
GCGGCAAATGCTGCCATAAC+TGG | 0.288463 | 6:+112497685 | MsaT034434.1:CDS |
CAAGCTGCAAAGACGCTTGC+AGG | 0.309609 | 6:+112498495 | MsaT034434.1:CDS |
CCTTCTTTCACTTCAAAGTT+AGG | 0.315523 | 6:-112496012 | None:intergenic |
TAAGGAGCTTTGTTCAGTTC+TGG | 0.332795 | 6:+112498458 | MsaT034434.1:CDS |
TCAGTTCTGGTACTAGTATC+TGG | 0.333159 | 6:+112498471 | MsaT034434.1:CDS |
TCTCAATAGAGTTATTACTA+TGG | 0.333741 | 6:+112499270 | MsaT034434.1:CDS |
GCAACAGCAGGTGGTTCAAC+AGG | 0.346703 | 6:+112494754 | MsaT034434.1:CDS |
TGCGGCTGCAACGGCGGCTG+CGG | 0.348875 | 6:+112494634 | MsaT034434.1:CDS |
TTAGGTCTTGATCTTGGTTT+GGG | 0.348976 | 6:-112495994 | None:intergenic |
GATCCAATCAACAATGAAAC+TGG | 0.349953 | 6:+112500131 | MsaT034434.1:CDS |
TTTCCAGTTTCATTGTTGAT+TGG | 0.364933 | 6:-112500134 | None:intergenic |
AAGTGAATTAGAGAATAAAA+AGG | 0.370167 | 6:+112500109 | MsaT034434.1:CDS |
GTTAGGTCTTGATCTTGGTT+TGG | 0.377110 | 6:-112495995 | None:intergenic |
AGAGACAAAGTGTTCTTCAT+TGG | 0.385382 | 6:+112500082 | MsaT034434.1:intron |
ATTACTATGGGAGAGATAAA+TGG | 0.386685 | 6:+112499283 | MsaT034434.1:CDS |
GCTGCCATAACTGGAGCTAT+TGG | 0.394392 | 6:+112497694 | MsaT034434.1:CDS |
CTCAGGGAGCACGCGATAGC+AGG | 0.397812 | 6:+112496875 | MsaT034434.1:CDS |
GTCGTAACCGTAACAAATTC+CGG | 0.402486 | 6:-112494611 | None:intergenic |
AACACTCTTCAGTGAGGGTT+GGG | 0.403450 | 6:+112494858 | MsaT034434.1:CDS |
CAAAATTGCGAGCAGCCCTC+AGG | 0.414226 | 6:+112496858 | MsaT034434.1:CDS |
TAATAAATGTAGGAGGAGGC+TGG | 0.417625 | 6:+112497460 | MsaT034434.1:intron |
CCGAAAAGACCGATGTCTCC+TGG | 0.421935 | 6:+112499076 | MsaT034434.1:CDS |
AAATTGCGAAGATGTATTGC+AGG | 0.422987 | 6:-112499176 | None:intergenic |
AGCATTCACAGTACTTCTTA+AGG | 0.425540 | 6:-112497540 | None:intergenic |
TCAAAGTTAGGTCTTGATCT+TGG | 0.425628 | 6:-112496000 | None:intergenic |
CTCAATAGAGTTATTACTAT+GGG | 0.427779 | 6:+112499271 | MsaT034434.1:CDS |
ATCAAAGAAAAGAAAAGGTC+AGG | 0.431936 | 6:+112497744 | MsaT034434.1:CDS |
CTGCAAGCGTCTTTGCAGCT+TGG | 0.434786 | 6:-112498494 | None:intergenic |
TGTCCCGGCTTGCTAATTGA+TGG | 0.441456 | 6:-112497796 | None:intergenic |
CGTGGTACAAATCCAACATT+AGG | 0.442565 | 6:+112498300 | MsaT034434.1:CDS |
TCCAAAGAATGTTGTTCATC+CGG | 0.443750 | 6:+112494592 | MsaT034434.1:CDS |
GTCCATCAAAATTAAAGTAC+AGG | 0.444356 | 6:+112498328 | MsaT034434.1:CDS |
AATTAGCAAGCCGGGACAAC+AGG | 0.448943 | 6:+112497801 | MsaT034434.1:CDS |
GAGTGTGACGGTGCAGAAAC+CGG | 0.453981 | 6:+112494778 | MsaT034434.1:CDS |
GTCTGCACCGGCGTTGGCAC+CGG | 0.455906 | 6:-112494830 | None:intergenic |
TCTGTCACTCCTTGTCCGTC+AGG | 0.456188 | 6:-112499199 | None:intergenic |
GCATGGGTCGTTTGCCCGAT+GGG | 0.456405 | 6:-112499154 | None:intergenic |
GGCAAACCACCCACTCCAAC+CGG | 0.458018 | 6:-112494797 | None:intergenic |
TGAGGGAAGTGAAGAGAGAC+AGG | 0.459062 | 6:+112497618 | MsaT034434.1:CDS |
CTTGCTAATTGATGGATCCT+TGG | 0.460693 | 6:-112497788 | None:intergenic |
GAGAGACAGGCTTTGTTTCG+TGG | 0.462723 | 6:+112497631 | MsaT034434.1:CDS |
TGACAGCTGCCTCTCCCATC+GGG | 0.464632 | 6:+112499140 | MsaT034434.1:CDS |
ACCGGCGTTGGCACCGGTAC+CGG | 0.464636 | 6:-112494824 | None:intergenic |
GAACTGAACAAAGCTCCTTA+AGG | 0.466976 | 6:-112498455 | None:intergenic |
CAAAGCTGCATTTCCACCTA+TGG | 0.469835 | 6:+112500208 | MsaT034434.1:CDS |
TTTCAGCTACAGTATCAATA+GGG | 0.473556 | 6:-112500352 | None:intergenic |
CATGGACTGCAAGAACTTTG+AGG | 0.474484 | 6:+112497600 | MsaT034434.1:CDS |
TGCGACTGCGACGGCGTGGT+TGG | 0.478541 | 6:+112494664 | MsaT034434.1:CDS |
TGCTATCGCGTGCTCCCTGA+GGG | 0.480213 | 6:-112496873 | None:intergenic |
AACACCTGCAGTTCCACCTA+TGG | 0.480803 | 6:+112500307 | MsaT034434.1:CDS |
AGCGTAATCCAAATGCATTT+AGG | 0.482400 | 6:+112496833 | MsaT034434.1:CDS |
AACACCTGCAGTTCCACCTA+TGG | 0.482822 | 6:+112500241 | MsaT034434.1:CDS |
TGTACAGCCACATCACCTTA+AGG | 0.485350 | 6:+112498440 | MsaT034434.1:CDS |
ATGACAGCTGCCTCTCCCAT+CGG | 0.486923 | 6:+112499139 | MsaT034434.1:CDS |
TGTTCATCCGGAATTTGTTA+CGG | 0.488179 | 6:+112494604 | MsaT034434.1:CDS |
CCATCTGAACATGAATTACC+AGG | 0.490481 | 6:-112499043 | None:intergenic |
ATCTTGTTCGTCACACATCA+AGG | 0.491361 | 6:-112499107 | None:intergenic |
CAGAACAAAGAACGTTGGCT+TGG | 0.493572 | 6:-112497564 | None:intergenic |
GGTGTTGAAGTTGCGGCCAT+AGG | 0.496042 | 6:-112500323 | None:intergenic |
GGCATGGGTCGTTTGCCCGA+TGG | 0.499482 | 6:-112499155 | None:intergenic |
GTTGGCACCGGTACCGGCAT+CGG | 0.499717 | 6:-112494818 | None:intergenic |
TACTGAGATAGTACATCAGC+AGG | 0.501027 | 6:+112500163 | MsaT034434.1:CDS |
AAGGTCAGGAACTCTTCTTA+TGG | 0.502814 | 6:+112497758 | MsaT034434.1:CDS |
TGGAGAATCCAAGCTGAAGA+TGG | 0.503658 | 6:+112500376 | MsaT034434.1:CDS |
GGTCGTTTGCCCGATGGGAG+AGG | 0.505246 | 6:-112499149 | None:intergenic |
ATGGACTGCAAGAACTTTGA+GGG | 0.505326 | 6:+112497601 | MsaT034434.1:CDS |
ATGTAGGAGGAGGCTGGGGA+AGG | 0.505481 | 6:+112497466 | MsaT034434.1:intron |
AATAAATGTAGGAGGAGGCT+GGG | 0.505499 | 6:+112497461 | MsaT034434.1:intron |
CAACACTCTTCAGTGAGGGT+TGG | 0.506481 | 6:+112494857 | MsaT034434.1:CDS |
TACGACTGCGGCTGCAACGG+CGG | 0.507622 | 6:+112494628 | MsaT034434.1:CDS |
GGATGAACAACATTCTTTGG+AGG | 0.510272 | 6:-112494590 | None:intergenic |
TTCTGAGAATTGTAGATGCA+TGG | 0.511900 | 6:+112497582 | MsaT034434.1:CDS |
CGAAAAGACCGATGTCTCCT+GGG | 0.513429 | 6:+112499077 | MsaT034434.1:CDS |
AGTGGGTGGTTTGCCGATGC+CGG | 0.514343 | 6:+112494805 | MsaT034434.1:CDS |
CTGATGTACTATCTCAGTAC+TGG | 0.516199 | 6:-112500159 | None:intergenic |
TGTTGAACCACCTGCTGTTG+CGG | 0.517452 | 6:-112494752 | None:intergenic |
GAAGCTGATGAGGAGGGTGC+TGG | 0.517647 | 6:-112498261 | None:intergenic |
GATGGACTCTGACCTAATGT+TGG | 0.519331 | 6:-112498312 | None:intergenic |
CCACGCCGTCGCAGTCGCAT+TGG | 0.519492 | 6:-112494660 | None:intergenic |
CACATCAAGGCTAAAGTCCC+AGG | 0.519918 | 6:-112499094 | None:intergenic |
GCAGTCGAAACCGCAACAGC+AGG | 0.525250 | 6:+112494742 | MsaT034434.1:CDS |
CCAGCATCAAAGAAAAGAAA+AGG | 0.526932 | 6:+112497739 | MsaT034434.1:CDS |
TGGTTTGCCGATGCCGGTAC+CGG | 0.528024 | 6:+112494811 | MsaT034434.1:CDS |
ACTGGAGCTATTGGTTCCTA+CGG | 0.529339 | 6:+112497703 | MsaT034434.1:CDS |
GCGAAGATGTATTGCAGGCA+TGG | 0.531295 | 6:-112499171 | None:intergenic |
GGTGTTGAAGTTGTGGCCAT+AGG | 0.532141 | 6:-112500257 | None:intergenic |
CAGAAACCGGTTGGAGTGGG+TGG | 0.532614 | 6:+112494791 | MsaT034434.1:CDS |
GGTTACGACTGCGGCTGCAA+CGG | 0.534767 | 6:+112494625 | MsaT034434.1:CDS |
GGTGTTGAAGTTGCGGCCAT+AGG | 0.535923 | 6:-112500224 | None:intergenic |
GTACCACGAGCACTTGAGAC+AGG | 0.538002 | 6:-112498285 | None:intergenic |
ATTTGTTACGGTTACGACTG+CGG | 0.540360 | 6:+112494616 | MsaT034434.1:CDS |
ACAGTATCAATAGGGACCTC+AGG | 0.540420 | 6:-112500344 | None:intergenic |
GGAACCAATAGCTCCAGTTA+TGG | 0.541771 | 6:-112497698 | None:intergenic |
AAAATTGCGAGCAGCCCTCA+GGG | 0.542064 | 6:+112496859 | MsaT034434.1:CDS |
GCTCTTGAGTTGATGAAGCA+AGG | 0.542763 | 6:-112498937 | None:intergenic |
CTCTTGAGTTGATGAAGCAA+GGG | 0.545085 | 6:-112498936 | None:intergenic |
GCCGGTACCGGTGCCAACGC+CGG | 0.546595 | 6:+112494823 | MsaT034434.1:CDS |
CCTAACTTTGAAGTGAAAGA+AGG | 0.546661 | 6:+112496012 | MsaT034434.1:CDS |
AAGGTACTCCAAAGAAGCAA+AGG | 0.548812 | 6:+112496031 | MsaT034434.1:CDS |
GGATCCATCAATTAGCAAGC+CGG | 0.552604 | 6:+112497792 | MsaT034434.1:CDS |
GATCCATCAATTAGCAAGCC+GGG | 0.555761 | 6:+112497793 | MsaT034434.1:CDS |
CAACAGCAGGTGGTTCAACA+GGG | 0.557867 | 6:+112494755 | MsaT034434.1:CDS |
GACCTCAGGTGTTGAAGTTG+CGG | 0.557962 | 6:-112500330 | None:intergenic |
TGAGACAGGTGAAGCTGATG+AGG | 0.562009 | 6:-112498271 | None:intergenic |
CTTCTTATGGCCTACAGCCA+AGG | 0.564439 | 6:+112497771 | MsaT034434.1:CDS |
CTGCTATCGCGTGCTCCCTG+AGG | 0.567725 | 6:-112496874 | None:intergenic |
GTTGAAGTTGCGGCCATAGG+TGG | 0.568296 | 6:-112500221 | None:intergenic |
GTTGAAGTTGCGGCCATAGG+TGG | 0.568296 | 6:-112500320 | None:intergenic |
CGAAGATGTATTGCAGGCAT+GGG | 0.569090 | 6:-112499170 | None:intergenic |
AAAAGAAGTTGACGTTGAGA+AGG | 0.569097 | 6:+112498973 | MsaT034434.1:CDS |
TTTGACATCACCATTGCTAG+TGG | 0.569409 | 6:-112500189 | None:intergenic |
GTGCAGAAACCGGTTGGAGT+GGG | 0.569804 | 6:+112494788 | MsaT034434.1:CDS |
TCGCAATTTCCTGACGGACA+AGG | 0.572247 | 6:+112499190 | MsaT034434.1:CDS |
AACTGCAGGTGTTGAAGTTG+TGG | 0.572999 | 6:-112500264 | None:intergenic |
GTTGAAGTTGTGGCAATATG+TGG | 0.573718 | 6:-112500287 | None:intergenic |
CAGCAGGAAGCCACTAGCAA+TGG | 0.574156 | 6:+112500179 | MsaT034434.1:CDS |
GCGGCCATAGGTGGAACTGC+AGG | 0.576630 | 6:-112500311 | None:intergenic |
TTAATGGCGGAAGGTGAAGG+AGG | 0.577062 | 6:+112494560 | None:intergenic |
TCAGGGAGCACGCGATAGCA+GGG | 0.577678 | 6:+112496876 | MsaT034434.1:CDS |
GCGTCGGGAATATATTGTGA+TGG | 0.580424 | 6:+112496736 | MsaT034434.1:CDS |
CCTGGTAATTCATGTTCAGA+TGG | 0.580857 | 6:+112499043 | MsaT034434.1:CDS |
GAGTGTTGAATTGTCTGCAC+CGG | 0.581684 | 6:-112494842 | None:intergenic |
AGTTGACGTTGAGAAGGCTA+TGG | 0.583343 | 6:+112498979 | MsaT034434.1:CDS |
GGTGCAGAAACCGGTTGGAG+TGG | 0.585730 | 6:+112494787 | MsaT034434.1:CDS |
AATATTAATAAAACATCACA+AGG | 0.586663 | 6:+112497492 | MsaT034434.1:CDS |
ATAAATGTAGGAGGAGGCTG+GGG | 0.586981 | 6:+112497462 | MsaT034434.1:intron |
GGCTGCCAATGCGACTGCGA+CGG | 0.590191 | 6:+112494655 | MsaT034434.1:CDS |
CAAACAGATAAAATCAGCCC+TGG | 0.591581 | 6:+112499025 | MsaT034434.1:CDS |
TGAATTGTCTGCACCGGCGT+TGG | 0.592942 | 6:-112494836 | None:intergenic |
AACTGCAGGTGTTGAAGTTG+TGG | 0.593897 | 6:-112500297 | None:intergenic |
AACTGCAGGTGTTGAAGTTG+CGG | 0.594681 | 6:-112500231 | None:intergenic |
ATTGATGGATCCTTGGCTGT+AGG | 0.596299 | 6:-112497781 | None:intergenic |
GTGGCCATAGGTGGAACTGC+AGG | 0.599317 | 6:-112500245 | None:intergenic |
GTTGAAGTTGTGGCCATAGG+TGG | 0.604086 | 6:-112500254 | None:intergenic |
CAAAGCTCCTTAAGGTGATG+TGG | 0.604962 | 6:-112498447 | None:intergenic |
CAATGTGTATCTTCAGCAAG+CGG | 0.607593 | 6:+112497666 | MsaT034434.1:CDS |
GTCGAAACCGCAACAGCAGG+TGG | 0.610823 | 6:+112494745 | MsaT034434.1:CDS |
GTGACGGTGCAGAAACCGGT+TGG | 0.612676 | 6:+112494782 | MsaT034434.1:CDS |
GCTAAAGTCCCAGGAGACAT+CGG | 0.613977 | 6:-112499085 | None:intergenic |
GTGGCAATATGTGGAACTGC+AGG | 0.618160 | 6:-112500278 | None:intergenic |
AATTCAACACTCTTCAGTGA+GGG | 0.622201 | 6:+112494853 | MsaT034434.1:CDS |
TGTCAGGTGAACCTTGTCAA+AGG | 0.626849 | 6:+112498237 | MsaT034434.1:intron |
TGCCTCGCTAGCTTCTTCGA+CGG | 0.628871 | 6:-112494692 | None:intergenic |
ACATCTTCGCAATTTCCTGA+CGG | 0.629950 | 6:+112499184 | MsaT034434.1:CDS |
TCACCTGTCTCAAGTGCTCG+TGG | 0.630205 | 6:+112498282 | MsaT034434.1:CDS |
ATTCTCAGAACAAAGAACGT+TGG | 0.631850 | 6:-112497569 | None:intergenic |
TATTAATAAAACATCACAAG+GGG | 0.635016 | 6:+112497494 | MsaT034434.1:CDS |
GACAGGTGAAGCTGATGAGG+AGG | 0.635684 | 6:-112498268 | None:intergenic |
AGGGTGCTGGACCTTTGACA+AGG | 0.645508 | 6:-112498248 | None:intergenic |
TACCGTCGAAGAAGCTAGCG+AGG | 0.646483 | 6:+112494690 | MsaT034434.1:CDS |
GGTTCAACAGGGGAGTGTGA+CGG | 0.651746 | 6:+112494766 | MsaT034434.1:CDS |
AACAGCAGGTGGTTCAACAG+GGG | 0.653532 | 6:+112494756 | MsaT034434.1:CDS |
CCAATGCGACTGCGACGGCG+TGG | 0.660370 | 6:+112494660 | MsaT034434.1:CDS |
GGCCGCAACTTCAACACCTG+AGG | 0.663052 | 6:+112500328 | MsaT034434.1:CDS |
CAATGAAGCTGCTAGACGAG+AGG | 0.668933 | 6:+112496792 | MsaT034434.1:CDS |
TGGAGGTGATGAAAAGCCGT+AGG | 0.674319 | 6:-112497719 | None:intergenic |
ATATTAATAAAACATCACAA+GGG | 0.678177 | 6:+112497493 | MsaT034434.1:CDS |
CATCTGAACATGAATTACCA+GGG | 0.687920 | 6:-112499042 | None:intergenic |
CAATTCAACACTCTTCAGTG+AGG | 0.689142 | 6:+112494852 | MsaT034434.1:CDS |
TGACGGACAAGGAGTGACAG+AGG | 0.696697 | 6:+112499201 | MsaT034434.1:CDS |
ACAGGTGAAGCTGATGAGGA+GGG | 0.698375 | 6:-112498267 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr6 | gene | 112494563 | 112500412 | 112494563 | ID=MsaG034434 |
Chr6 | mRNA | 112494563 | 112500412 | 112494563 | ID=MsaT034434.1;Parent=MsaG034434 |
Chr6 | exon | 112494563 | 112494879 | 112494563 | ID=MsaT034434.1.exon1;Parent=MsaT034434.1 |
Chr6 | CDS | 112494563 | 112494879 | 112494563 | ID=cds.MsaT034434.1;Parent=MsaT034434.1 |
Chr6 | exon | 112495981 | 112496088 | 112495981 | ID=MsaT034434.1.exon2;Parent=MsaT034434.1 |
Chr6 | CDS | 112495981 | 112496088 | 112495981 | ID=cds.MsaT034434.1;Parent=MsaT034434.1 |
Chr6 | exon | 112496720 | 112496897 | 112496720 | ID=MsaT034434.1.exon3;Parent=MsaT034434.1 |
Chr6 | CDS | 112496720 | 112496897 | 112496720 | ID=cds.MsaT034434.1;Parent=MsaT034434.1 |
Chr6 | exon | 112497472 | 112497822 | 112497472 | ID=MsaT034434.1.exon4;Parent=MsaT034434.1 |
Chr6 | CDS | 112497472 | 112497822 | 112497472 | ID=cds.MsaT034434.1;Parent=MsaT034434.1 |
Chr6 | exon | 112498243 | 112498349 | 112498243 | ID=MsaT034434.1.exon5;Parent=MsaT034434.1 |
Chr6 | CDS | 112498243 | 112498349 | 112498243 | ID=cds.MsaT034434.1;Parent=MsaT034434.1 |
Chr6 | exon | 112498422 | 112498516 | 112498422 | ID=MsaT034434.1.exon6;Parent=MsaT034434.1 |
Chr6 | CDS | 112498422 | 112498516 | 112498422 | ID=cds.MsaT034434.1;Parent=MsaT034434.1 |
Chr6 | exon | 112498888 | 112499304 | 112498888 | ID=MsaT034434.1.exon7;Parent=MsaT034434.1 |
Chr6 | CDS | 112498888 | 112499304 | 112498888 | ID=cds.MsaT034434.1;Parent=MsaT034434.1 |
Chr6 | exon | 112500084 | 112500412 | 112500084 | ID=MsaT034434.1.exon8;Parent=MsaT034434.1 |
Chr6 | CDS | 112500084 | 112500412 | 112500084 | ID=cds.MsaT034434.1;Parent=MsaT034434.1 |
Gene Sequence |
Protein sequence |