Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG034507 | XP_024641824.1 | 99.292 | 424 | 3 | 0 | 1 | 424 | 1 | 424 | 0.0 | 878 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG034507 | sp|Q93Z18|CKL3_ARATH | 70.883 | 419 | 107 | 4 | 1 | 410 | 1 | 413 | 0.0 | 612 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG034507 | tr|G7KPU7|G7KPU7_MEDTR | 99.292 | 424 | 3 | 0 | 1 | 424 | 1 | 424 | 0.0 | 878 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG034507 | MtrunA17_Chr6g0486611 | 99.292 | 424 | 3 | 0 | 1 | 424 | 1 | 424 | 0.0 | 878 |
MsaG034507 | MtrunA17_Chr8g0390211 | 79.812 | 426 | 82 | 4 | 1 | 424 | 1 | 424 | 0.0 | 699 |
MsaG034507 | MtrunA17_Chr3g0140071 | 64.619 | 407 | 132 | 5 | 1 | 398 | 1 | 404 | 0.0 | 524 |
MsaG034507 | MtrunA17_Chr2g0329981 | 63.246 | 419 | 138 | 7 | 1 | 411 | 1 | 411 | 0.0 | 520 |
MsaG034507 | MtrunA17_Chr4g0071031 | 72.973 | 333 | 89 | 1 | 1 | 333 | 1 | 332 | 0.0 | 520 |
MsaG034507 | MtrunA17_Chr1g0166821 | 75.625 | 320 | 75 | 2 | 1 | 317 | 2 | 321 | 0.0 | 519 |
MsaG034507 | MtrunA17_Chr1g0183631 | 76.299 | 308 | 73 | 0 | 1 | 308 | 1 | 308 | 5.40e-179 | 507 |
MsaG034507 | MtrunA17_Chr8g0342821 | 77.926 | 299 | 65 | 1 | 1 | 299 | 1 | 298 | 7.46e-179 | 507 |
MsaG034507 | MtrunA17_Chr1g0146151 | 60.526 | 418 | 149 | 5 | 1 | 411 | 1 | 409 | 3.27e-177 | 501 |
MsaG034507 | MtrunA17_Chr1g0187571 | 72.586 | 321 | 85 | 2 | 1 | 318 | 2 | 322 | 1.16e-176 | 501 |
MsaG034507 | MtrunA17_Chr7g0261501 | 76.094 | 297 | 71 | 0 | 1 | 297 | 1 | 297 | 1.09e-174 | 496 |
MsaG034507 | MtrunA17_Chr2g0299661 | 73.579 | 299 | 79 | 0 | 1 | 299 | 1 | 299 | 1.22e-171 | 489 |
MsaG034507 | MtrunA17_Chr1g0167261 | 69.000 | 300 | 91 | 1 | 1 | 298 | 2 | 301 | 1.14e-154 | 441 |
MsaG034507 | MtrunA17_Chr7g0214531 | 36.268 | 284 | 164 | 5 | 9 | 278 | 37 | 317 | 1.13e-55 | 194 |
MsaG034507 | MtrunA17_Chr1g0213321 | 37.818 | 275 | 157 | 6 | 9 | 273 | 119 | 389 | 3.71e-54 | 191 |
MsaG034507 | MtrunA17_Chr1g0146301 | 36.996 | 273 | 161 | 5 | 9 | 273 | 124 | 393 | 2.07e-53 | 189 |
MsaG034507 | MtrunA17_Chr3g0140431 | 36.264 | 273 | 163 | 5 | 9 | 273 | 38 | 307 | 1.68e-52 | 185 |
MsaG034507 | MtrunA17_Chr7g0253211 | 36.879 | 282 | 160 | 6 | 9 | 276 | 324 | 601 | 2.14e-52 | 188 |
MsaG034507 | MtrunA17_Chr8g0340491 | 34.043 | 282 | 164 | 6 | 9 | 273 | 128 | 404 | 1.52e-47 | 172 |
MsaG034507 | MtrunA17_Chr7g0245031 | 26.050 | 238 | 158 | 5 | 3 | 236 | 142 | 365 | 3.49e-13 | 71.2 |
MsaG034507 | MtrunA17_Chr5g0428981 | 25.000 | 288 | 151 | 9 | 2 | 249 | 756 | 1018 | 5.19e-13 | 71.2 |
MsaG034507 | MtrunA17_Chr4g0018201 | 25.091 | 275 | 147 | 8 | 2 | 236 | 752 | 1007 | 7.18e-13 | 70.9 |
MsaG034507 | MtrunA17_Chr8g0387671 | 31.132 | 212 | 128 | 8 | 9 | 213 | 66 | 266 | 1.11e-12 | 69.7 |
MsaG034507 | MtrunA17_Chr5g0397101 | 29.384 | 211 | 133 | 6 | 9 | 213 | 67 | 267 | 5.87e-12 | 67.4 |
MsaG034507 | MtrunA17_Chr1g0205931 | 26.818 | 220 | 134 | 8 | 8 | 213 | 54 | 260 | 8.19e-12 | 67.0 |
MsaG034507 | MtrunA17_Chr7g0272841 | 26.364 | 220 | 135 | 7 | 8 | 213 | 67 | 273 | 8.23e-12 | 67.0 |
MsaG034507 | MtrunA17_Chr4g0059951 | 30.968 | 155 | 100 | 4 | 5 | 153 | 69 | 222 | 2.02e-11 | 65.9 |
MsaG034507 | MtrunA17_Chr4g0075541 | 29.412 | 170 | 103 | 4 | 100 | 269 | 185 | 337 | 2.40e-11 | 65.1 |
MsaG034507 | MtrunA17_Chr8g0374701 | 27.803 | 223 | 134 | 9 | 6 | 213 | 122 | 332 | 3.45e-11 | 65.1 |
MsaG034507 | MtrunA17_Chr3g0098951 | 26.754 | 228 | 148 | 6 | 9 | 230 | 84 | 298 | 4.00e-11 | 64.7 |
MsaG034507 | MtrunA17_Chr3g0127571 | 28.767 | 219 | 134 | 7 | 6 | 213 | 135 | 342 | 5.41e-11 | 64.7 |
MsaG034507 | MtrunA17_Chr4g0045261 | 26.977 | 215 | 139 | 5 | 8 | 213 | 136 | 341 | 6.72e-11 | 64.3 |
MsaG034507 | MtrunA17_Chr6g0455651 | 27.652 | 264 | 164 | 9 | 15 | 267 | 122 | 369 | 7.70e-11 | 63.5 |
MsaG034507 | MtrunA17_Chr4g0033371 | 28.509 | 228 | 134 | 9 | 5 | 219 | 68 | 279 | 7.84e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG034507 | AT4G28880.3 | 70.883 | 419 | 107 | 4 | 1 | 410 | 1 | 413 | 0.0 | 612 |
MsaG034507 | AT4G28880.2 | 70.883 | 419 | 107 | 4 | 1 | 410 | 1 | 413 | 0.0 | 612 |
MsaG034507 | AT4G28880.1 | 70.883 | 419 | 107 | 4 | 1 | 410 | 1 | 413 | 0.0 | 612 |
MsaG034507 | AT4G28880.4 | 70.883 | 419 | 107 | 4 | 1 | 410 | 1 | 413 | 0.0 | 612 |
MsaG034507 | AT4G28860.1 | 71.801 | 422 | 102 | 7 | 1 | 416 | 1 | 411 | 0.0 | 607 |
MsaG034507 | AT4G28860.2 | 79.339 | 363 | 68 | 3 | 1 | 358 | 1 | 361 | 0.0 | 602 |
MsaG034507 | AT4G26100.1 | 72.000 | 325 | 90 | 1 | 1 | 325 | 1 | 324 | 7.63e-180 | 509 |
MsaG034507 | AT5G57015.1 | 71.875 | 320 | 90 | 0 | 1 | 320 | 1 | 320 | 8.63e-178 | 503 |
MsaG034507 | AT1G72710.1 | 69.275 | 345 | 103 | 3 | 1 | 345 | 1 | 342 | 3.16e-177 | 503 |
MsaG034507 | AT2G19470.1 | 68.452 | 336 | 96 | 3 | 1 | 327 | 1 | 335 | 1.18e-175 | 498 |
MsaG034507 | AT1G03930.1 | 75.084 | 297 | 74 | 0 | 1 | 297 | 1 | 297 | 5.22e-175 | 498 |
MsaG034507 | AT4G28540.1 | 75.503 | 298 | 73 | 0 | 1 | 298 | 5 | 302 | 8.65e-175 | 497 |
MsaG034507 | AT5G44100.1 | 69.394 | 330 | 90 | 1 | 1 | 319 | 1 | 330 | 3.08e-174 | 496 |
MsaG034507 | AT5G44100.2 | 69.394 | 330 | 90 | 1 | 1 | 319 | 1 | 330 | 3.08e-174 | 496 |
MsaG034507 | AT3G23340.1 | 72.756 | 312 | 84 | 1 | 1 | 312 | 1 | 311 | 7.02e-174 | 494 |
MsaG034507 | AT5G43320.1 | 73.737 | 297 | 78 | 0 | 1 | 297 | 1 | 297 | 2.28e-170 | 486 |
MsaG034507 | AT4G14340.1 | 71.474 | 312 | 88 | 1 | 1 | 312 | 7 | 317 | 7.24e-170 | 484 |
MsaG034507 | AT1G04440.1 | 69.018 | 326 | 93 | 2 | 1 | 318 | 1 | 326 | 3.04e-169 | 483 |
MsaG034507 | AT4G14340.2 | 71.474 | 312 | 88 | 1 | 1 | 312 | 7 | 317 | 3.37e-169 | 479 |
MsaG034507 | AT5G43320.2 | 73.737 | 297 | 78 | 0 | 1 | 297 | 1 | 297 | 2.81e-168 | 476 |
MsaG034507 | AT5G43320.3 | 73.737 | 297 | 78 | 0 | 1 | 297 | 1 | 297 | 2.81e-168 | 476 |
MsaG034507 | AT3G23340.2 | 69.231 | 312 | 81 | 2 | 1 | 312 | 1 | 297 | 4.26e-161 | 461 |
MsaG034507 | AT4G08800.1 | 62.585 | 294 | 78 | 2 | 1 | 294 | 1 | 262 | 3.82e-135 | 389 |
MsaG034507 | AT2G25760.2 | 38.214 | 280 | 158 | 4 | 9 | 273 | 107 | 386 | 4.95e-57 | 199 |
MsaG034507 | AT3G03940.1 | 37.809 | 283 | 158 | 6 | 9 | 277 | 140 | 418 | 1.63e-55 | 195 |
MsaG034507 | AT2G25760.1 | 37.857 | 280 | 156 | 5 | 9 | 273 | 107 | 383 | 7.74e-55 | 193 |
MsaG034507 | AT5G18190.2 | 36.842 | 285 | 162 | 6 | 9 | 279 | 130 | 410 | 5.99e-54 | 191 |
MsaG034507 | AT5G18190.1 | 36.842 | 285 | 162 | 6 | 9 | 279 | 130 | 410 | 5.99e-54 | 191 |
MsaG034507 | AT3G13670.1 | 35.211 | 284 | 167 | 5 | 9 | 278 | 137 | 417 | 2.25e-53 | 189 |
MsaG034507 | AT4G23650.1 | 29.384 | 211 | 133 | 6 | 9 | 213 | 78 | 278 | 6.07e-13 | 70.9 |
MsaG034507 | AT1G54960.1 | 27.064 | 218 | 136 | 7 | 8 | 213 | 67 | 273 | 1.36e-12 | 70.1 |
MsaG034507 | AT1G54960.2 | 27.064 | 218 | 136 | 7 | 8 | 213 | 67 | 273 | 1.36e-12 | 70.1 |
MsaG034507 | AT3G23000.1 | 30.303 | 231 | 140 | 9 | 3 | 224 | 19 | 237 | 2.69e-12 | 68.6 |
MsaG034507 | AT3G06030.1 | 26.147 | 218 | 138 | 7 | 8 | 213 | 67 | 273 | 2.85e-12 | 68.9 |
MsaG034507 | AT2G46700.1 | 26.267 | 217 | 142 | 4 | 6 | 213 | 140 | 347 | 6.02e-12 | 67.8 |
MsaG034507 | AT3G08720.1 | 24.370 | 238 | 160 | 6 | 4 | 236 | 134 | 356 | 7.02e-12 | 67.4 |
MsaG034507 | AT3G08720.3 | 24.370 | 238 | 160 | 6 | 4 | 236 | 134 | 356 | 7.02e-12 | 67.4 |
MsaG034507 | AT3G08720.4 | 24.370 | 238 | 160 | 6 | 4 | 236 | 134 | 356 | 7.02e-12 | 67.4 |
MsaG034507 | AT3G08720.2 | 24.370 | 238 | 160 | 6 | 4 | 236 | 134 | 356 | 7.02e-12 | 67.4 |
MsaG034507 | AT2G41860.1 | 27.907 | 215 | 139 | 6 | 5 | 213 | 50 | 254 | 7.31e-12 | 67.4 |
MsaG034507 | AT3G50530.1 | 26.941 | 219 | 140 | 7 | 5 | 213 | 144 | 352 | 9.77e-12 | 67.4 |
MsaG034507 | AT1G09000.1 | 27.189 | 217 | 135 | 7 | 9 | 213 | 69 | 274 | 1.16e-11 | 67.0 |
MsaG034507 | AT2G41860.2 | 27.907 | 215 | 139 | 6 | 5 | 213 | 50 | 254 | 1.19e-11 | 67.0 |
MsaG034507 | AT1G09000.2 | 27.189 | 217 | 135 | 7 | 9 | 213 | 69 | 274 | 1.65e-11 | 66.6 |
MsaG034507 | AT3G17850.1 | 24.254 | 268 | 159 | 8 | 2 | 236 | 875 | 1131 | 1.67e-11 | 67.0 |
MsaG034507 | AT1G74740.1 | 27.442 | 215 | 140 | 6 | 5 | 213 | 55 | 259 | 1.68e-11 | 66.6 |
MsaG034507 | AT3G08730.1 | 23.790 | 248 | 169 | 6 | 4 | 246 | 128 | 360 | 1.93e-11 | 66.2 |
MsaG034507 | AT3G08730.2 | 23.790 | 248 | 169 | 6 | 4 | 246 | 128 | 360 | 1.93e-11 | 66.2 |
MsaG034507 | AT3G20410.2 | 27.193 | 228 | 147 | 6 | 9 | 230 | 91 | 305 | 2.15e-11 | 66.2 |
MsaG034507 | AT3G20410.1 | 27.193 | 228 | 147 | 6 | 9 | 230 | 91 | 305 | 2.15e-11 | 66.2 |
MsaG034507 | AT2G17890.1 | 25.116 | 215 | 145 | 5 | 8 | 215 | 107 | 312 | 2.87e-11 | 65.9 |
MsaG034507 | AT4G24400.1 | 27.686 | 242 | 126 | 9 | 8 | 227 | 8 | 222 | 4.48e-11 | 65.1 |
MsaG034507 | AT4G24400.2 | 27.686 | 242 | 126 | 9 | 8 | 227 | 8 | 222 | 5.60e-11 | 64.3 |
MsaG034507 | AT1G18890.1 | 28.182 | 220 | 132 | 7 | 5 | 213 | 59 | 263 | 5.83e-11 | 64.7 |
MsaG034507 | AT3G49370.1 | 28.571 | 217 | 133 | 7 | 8 | 213 | 141 | 346 | 6.19e-11 | 64.7 |
MsaG034507 | AT1G50700.3 | 27.273 | 231 | 149 | 7 | 9 | 233 | 73 | 290 | 8.19e-11 | 64.3 |
MsaG034507 | AT1G50700.2 | 27.273 | 231 | 149 | 7 | 9 | 233 | 73 | 290 | 8.94e-11 | 64.3 |
MsaG034507 | AT1G50700.1 | 27.273 | 231 | 149 | 7 | 9 | 233 | 73 | 290 | 9.08e-11 | 64.3 |
Find 113 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGGTATATGTAATTGATTT+TGG | 0.199306 | 6:+113407352 | MsaT034507.1:intron |
ATTCTTGAGGCGCCTATTTC+GGG | 0.201735 | 6:+113408188 | MsaT034507.1:CDS |
GATTCTTGAGGCGCCTATTT+CGG | 0.235818 | 6:+113408187 | MsaT034507.1:CDS |
TTTGATCAGCGACCTGATTA+TGG | 0.244829 | 6:+113408165 | MsaT034507.1:CDS |
GAGCAAATAACTCCCGAAAT+AGG | 0.299908 | 6:-113408200 | None:intergenic |
GCTTCTTTGTCGCAGCCTTT+AGG | 0.310608 | 6:-113407950 | None:intergenic |
AGAATGCACATACTCTATTC+TGG | 0.314521 | 6:-113407138 | None:intergenic |
ACAAAGCCGCCGGGATGATT+TGG | 0.324631 | 6:+113407765 | MsaT034507.1:CDS |
AATTTGATTATGTATTTGAT+TGG | 0.332820 | 6:+113408716 | MsaT034507.1:CDS |
TTGGGCTTGCAAAACGATAT+CGG | 0.336257 | 6:+113407371 | MsaT034507.1:CDS |
TACCGCCTGATGATTTAAAC+TGG | 0.353819 | 6:-113409084 | None:intergenic |
TCAAAAGAGTGTGAAGTAGA+AGG | 0.355419 | 6:-113409322 | None:intergenic |
TCAGACAATGCCGCTTCTTC+CGG | 0.363687 | 6:+113409052 | MsaT034507.1:CDS |
GGAAGACAATGTGCTTGTTA+TGG | 0.374985 | 6:+113406839 | MsaT034507.1:CDS |
AAGTTCCAGTTTAAATCATC+AGG | 0.379006 | 6:+113409079 | MsaT034507.1:CDS |
GCAAGCTGCAATACTCATCT+TGG | 0.385425 | 6:+113407651 | MsaT034507.1:CDS |
TGCTCCCTTGCCCATGCCTA+TGG | 0.400254 | 6:-113409396 | None:intergenic |
GCCCGATTGTTGCTCGCTAC+AGG | 0.409927 | 6:-113408887 | None:intergenic |
TTCCTGTAGCGAGCAACAAT+CGG | 0.414919 | 6:+113408885 | MsaT034507.1:CDS |
TTGGCTTCTGAGAATCATCT+TGG | 0.415195 | 6:+113409112 | MsaT034507.1:CDS |
GGGCAGATGCTTACCTCAAT+AGG | 0.418445 | 6:-113408011 | None:intergenic |
CGCCTCAAGAATCCATAATC+AGG | 0.420387 | 6:-113408177 | None:intergenic |
TGTGCTTGTTATGGATTTGT+TGG | 0.425675 | 6:+113406848 | MsaT034507.1:CDS |
TAGAAAGTTCAAAACCTGTA+TGG | 0.426001 | 6:-113407418 | None:intergenic |
ATCGGTGATAAATTCAAGTT+AGG | 0.432066 | 6:+113405320 | MsaT034507.1:CDS |
CGGGATGATTTGGAGTCTCT+TGG | 0.432361 | 6:+113407775 | MsaT034507.1:CDS |
CCTCAAAACTGTCTTGATGT+TGG | 0.434362 | 6:+113406917 | MsaT034507.1:CDS |
TGGGCTTGCAAAACGATATC+GGG | 0.435539 | 6:+113407372 | MsaT034507.1:CDS |
TGGGATGTGGCGATTGGTTG+TGG | 0.437079 | 6:-113407398 | None:intergenic |
GGGCAAGGGAGCAGTAAAAT+TGG | 0.439859 | 6:+113409406 | MsaT034507.1:CDS |
GTGCTTGTTATGGATTTGTT+GGG | 0.443410 | 6:+113406849 | MsaT034507.1:CDS |
CACCACTCCATCTTATGCTT+GGG | 0.449410 | 6:-113406809 | None:intergenic |
TTGAAGAATATTATAGAGCT+TGG | 0.455654 | 6:-113406243 | None:intergenic |
ATAGAGTATGTGCATTCTAA+AGG | 0.458276 | 6:+113407143 | MsaT034507.1:CDS |
CTTGATGTTGGCTGATCAAA+TGG | 0.461622 | 6:+113406929 | MsaT034507.1:CDS |
ACATTCATCCGACTGCTTGA+AGG | 0.461732 | 6:-113409430 | None:intergenic |
TACTTACGGATATGTGAGGC+TGG | 0.464438 | 6:-113408777 | None:intergenic |
GGTTCAAGCACCAACCTTGT+TGG | 0.476423 | 6:-113408931 | None:intergenic |
CCTCCATAGGGATATAAAAC+CGG | 0.477649 | 6:+113407169 | MsaT034507.1:CDS |
ATTCTAAAGGGTTCCTCCAT+AGG | 0.479961 | 6:+113407156 | MsaT034507.1:CDS |
TGCAATACTCATCTTGGGAT+TGG | 0.480350 | 6:+113407657 | MsaT034507.1:CDS |
TCTGTTGTGTTGCAGGAGAC+TGG | 0.481529 | 6:+113406188 | MsaT034507.1:intron |
CAAGCTGCAATACTCATCTT+GGG | 0.484146 | 6:+113407652 | MsaT034507.1:CDS |
AAGCTCTATAATATTCTTCA+AGG | 0.485336 | 6:+113406245 | MsaT034507.1:CDS |
TAAGATGGAGTGGTGTAGAC+GGG | 0.495163 | 6:+113406817 | MsaT034507.1:CDS |
AGTGGACGCGGAAGGCTTCA+AGG | 0.495368 | 6:-113409362 | None:intergenic |
ACACCACTCCATCTTATGCT+TGG | 0.495604 | 6:-113406810 | None:intergenic |
TTGTTGGTTATCAATATCCA+TGG | 0.497091 | 6:-113408915 | None:intergenic |
AGGTCAAAGAATGGCAGTAA+TGG | 0.499416 | 6:-113408143 | None:intergenic |
TCCTGTAGCGAGCAACAATC+GGG | 0.501671 | 6:+113408886 | MsaT034507.1:CDS |
TTGTTGCTCGCTACAGGAAC+CGG | 0.502364 | 6:-113408881 | None:intergenic |
GCTTGCATAACGCGCAGTCC+CGG | 0.502927 | 6:-113407634 | None:intergenic |
TAGAGTATGTGCATTCTAAA+GGG | 0.503360 | 6:+113407144 | MsaT034507.1:CDS |
CCTTCCCTGGCAAAACCTAA+AGG | 0.504434 | 6:+113407935 | MsaT034507.1:CDS |
TAATTGTGTTTAGCCTTCCC+TGG | 0.508361 | 6:+113407922 | MsaT034507.1:intron |
ACTTGGTCGGAAGGCAAACC+TGG | 0.509382 | 6:+113407208 | MsaT034507.1:CDS |
GAAAGTATCAACTCCTATTG+AGG | 0.519371 | 6:+113407998 | MsaT034507.1:CDS |
TTAGGACGCAAGATCGGAAG+TGG | 0.521534 | 6:+113405338 | MsaT034507.1:CDS |
TTCTAAAGGGTTCCTCCATA+GGG | 0.522924 | 6:+113407157 | MsaT034507.1:CDS |
AAGATCGGAAGTGGATCCTT+CGG | 0.526716 | 6:+113405347 | MsaT034507.1:CDS |
AGAAAGTTCAAAACCTGTAT+GGG | 0.527700 | 6:-113407417 | None:intergenic |
CGGGAGTTATTTGCTCGAGA+AGG | 0.530876 | 6:+113408207 | MsaT034507.1:CDS |
GTGGTATCCCAAGCATAAGA+TGG | 0.531050 | 6:+113406802 | MsaT034507.1:CDS |
CAAAAGAGTGTGAAGTAGAA+GGG | 0.533732 | 6:-113409321 | None:intergenic |
CCAATCGCCACATCCCATAC+AGG | 0.535975 | 6:+113407404 | MsaT034507.1:CDS |
GATAACTTTCTCATGGGACT+TGG | 0.540360 | 6:+113407191 | MsaT034507.1:CDS |
CCTATGGTTTGCAGCTTCAG+TGG | 0.548768 | 6:-113409380 | None:intergenic |
TCCTTCGGTGAAATCTATCT+CGG | 0.549980 | 6:+113405362 | MsaT034507.1:CDS |
TTCAAGTTAGGACGCAAGAT+CGG | 0.551617 | 6:+113405332 | MsaT034507.1:CDS |
TTCAAAACCTGTATGGGATG+TGG | 0.553955 | 6:-113407411 | None:intergenic |
CAACAATCGGGCAATGCCCA+TGG | 0.556507 | 6:+113408898 | MsaT034507.1:CDS |
TTTGTTGGGCCCTAGTCTTG+AGG | 0.561115 | 6:+113406863 | MsaT034507.1:CDS |
AAACCGGATAACTTTCTCAT+GGG | 0.561522 | 6:+113407185 | MsaT034507.1:CDS |
GCAAACCATAGGCATGGGCA+AGG | 0.564524 | 6:+113409391 | MsaT034507.1:CDS |
TCTCATGGGACTTGGTCGGA+AGG | 0.565028 | 6:+113407199 | MsaT034507.1:CDS |
GAAGCTGCAAACCATAGGCA+TGG | 0.565598 | 6:+113409385 | MsaT034507.1:CDS |
AGATTCATGGATCGAATCAT+CGG | 0.566316 | 6:+113405302 | None:intergenic |
GCAGCTTCAGTGGACGCGGA+AGG | 0.566995 | 6:-113409370 | None:intergenic |
ATAAGATGGAGTGGTGTAGA+CGG | 0.572946 | 6:+113406816 | MsaT034507.1:CDS |
ATAATCAGGTCGCTGATCAA+AGG | 0.572957 | 6:-113408163 | None:intergenic |
AAAACCGGATAACTTTCTCA+TGG | 0.575825 | 6:+113407184 | MsaT034507.1:CDS |
CCACTGAAGCTGCAAACCAT+AGG | 0.576164 | 6:+113409380 | MsaT034507.1:CDS |
AGTCCCATGAGAAAGTTATC+CGG | 0.577140 | 6:-113407188 | None:intergenic |
GTTTGCAGCTTCAGTGGACG+CGG | 0.581258 | 6:-113409374 | None:intergenic |
TTGGCTTCATAAAGCAATTG+TGG | 0.582787 | 6:-113406224 | None:intergenic |
GCTGATCAAAGGTCAAAGAA+TGG | 0.590024 | 6:-113408152 | None:intergenic |
AAGTACGAAGCAAACTCTAC+CGG | 0.592044 | 6:-113408120 | None:intergenic |
ACTTTCTCATGGGACTTGGT+CGG | 0.592057 | 6:+113407195 | MsaT034507.1:CDS |
AAGCTGCAAACCATAGGCAT+GGG | 0.597512 | 6:+113409386 | MsaT034507.1:CDS |
ATTTGTAGAACAAAGCCGCC+GGG | 0.602617 | 6:+113407756 | MsaT034507.1:intron |
CCTGTATGGGATGTGGCGAT+TGG | 0.602796 | 6:-113407404 | None:intergenic |
ACGAAGCAAACTCTACCGGA+TGG | 0.603077 | 6:-113408116 | None:intergenic |
TGTTGGTTATCAATATCCAT+GGG | 0.604040 | 6:-113408914 | None:intergenic |
GAACTTAACACCGGAAGAAG+CGG | 0.606399 | 6:-113409062 | None:intergenic |
ATCCCAAGCATAAGATGGAG+TGG | 0.620505 | 6:+113406807 | MsaT034507.1:CDS |
ACCGAGATAGATTTCACCGA+AGG | 0.620573 | 6:-113405363 | None:intergenic |
AAATTGGTCCTTCAAGCAGT+CGG | 0.622441 | 6:+113409422 | MsaT034507.1:CDS |
CAAGAGACTCCAAATCATCC+CGG | 0.622494 | 6:-113407774 | None:intergenic |
TTTAAACTGGAACTTAACAC+CGG | 0.623764 | 6:-113409071 | None:intergenic |
CGAAGCAAACTCTACCGGAT+GGG | 0.625993 | 6:-113408115 | None:intergenic |
TTCCAGTTTAAATCATCAGG+CGG | 0.630569 | 6:+113409082 | MsaT034507.1:CDS |
ACTTACGGATATGTGAGGCT+GGG | 0.634330 | 6:-113408776 | None:intergenic |
CTCTATAATATTCTTCAAGG+AGG | 0.636528 | 6:+113406248 | MsaT034507.1:CDS |
TATTTGTAGAACAAAGCCGC+CGG | 0.642128 | 6:+113407755 | MsaT034507.1:intron |
CAAACCATAGGCATGGGCAA+GGG | 0.646006 | 6:+113409392 | MsaT034507.1:CDS |
CTTGACAGCAACGATCTCGA+AGG | 0.646641 | 6:-113405510 | None:intergenic |
AATATACTTACGGATATGTG+AGG | 0.660737 | 6:-113408781 | None:intergenic |
AAGATGGAGTGGTGTAGACG+GGG | 0.662328 | 6:+113406818 | MsaT034507.1:CDS |
GACCTGATTATGGATTCTTG+AGG | 0.667363 | 6:+113408175 | MsaT034507.1:CDS |
GAATGCCATACCTTCCTCTG+AGG | 0.704652 | 6:-113407816 | None:intergenic |
ATGGATATTGATAACCAACA+AGG | 0.718739 | 6:+113408917 | MsaT034507.1:CDS |
TTATACAGGGGATGTCTCAG+CGG | 0.724472 | 6:+113409018 | MsaT034507.1:intron |
GAGACTCCAAATCATCCCGG+CGG | 0.750112 | 6:-113407771 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr6 | gene | 113405308 | 113409477 | 113405308 | ID=MsaG034507 |
Chr6 | mRNA | 113405308 | 113409477 | 113405308 | ID=MsaT034507.1;Parent=MsaG034507 |
Chr6 | exon | 113405308 | 113405383 | 113405308 | ID=MsaT034507.1.exon1;Parent=MsaT034507.1 |
Chr6 | CDS | 113405308 | 113405383 | 113405308 | ID=cds.MsaT034507.1;Parent=MsaT034507.1 |
Chr6 | exon | 113405495 | 113405535 | 113405495 | ID=MsaT034507.1.exon2;Parent=MsaT034507.1 |
Chr6 | CDS | 113405495 | 113405535 | 113405495 | ID=cds.MsaT034507.1;Parent=MsaT034507.1 |
Chr6 | exon | 113406203 | 113406272 | 113406203 | ID=MsaT034507.1.exon3;Parent=MsaT034507.1 |
Chr6 | CDS | 113406203 | 113406272 | 113406203 | ID=cds.MsaT034507.1;Parent=MsaT034507.1 |
Chr6 | exon | 113406802 | 113406950 | 113406802 | ID=MsaT034507.1.exon4;Parent=MsaT034507.1 |
Chr6 | CDS | 113406802 | 113406950 | 113406802 | ID=cds.MsaT034507.1;Parent=MsaT034507.1 |
Chr6 | exon | 113407134 | 113407229 | 113407134 | ID=MsaT034507.1.exon5;Parent=MsaT034507.1 |
Chr6 | CDS | 113407134 | 113407229 | 113407134 | ID=cds.MsaT034507.1;Parent=MsaT034507.1 |
Chr6 | exon | 113407355 | 113407425 | 113407355 | ID=MsaT034507.1.exon6;Parent=MsaT034507.1 |
Chr6 | CDS | 113407355 | 113407425 | 113407355 | ID=cds.MsaT034507.1;Parent=MsaT034507.1 |
Chr6 | exon | 113407617 | 113407678 | 113407617 | ID=MsaT034507.1.exon7;Parent=MsaT034507.1 |
Chr6 | CDS | 113407617 | 113407678 | 113407617 | ID=cds.MsaT034507.1;Parent=MsaT034507.1 |
Chr6 | exon | 113407764 | 113407827 | 113407764 | ID=MsaT034507.1.exon8;Parent=MsaT034507.1 |
Chr6 | CDS | 113407764 | 113407827 | 113407764 | ID=cds.MsaT034507.1;Parent=MsaT034507.1 |
Chr6 | exon | 113407935 | 113408019 | 113407935 | ID=MsaT034507.1.exon9;Parent=MsaT034507.1 |
Chr6 | CDS | 113407935 | 113408019 | 113407935 | ID=cds.MsaT034507.1;Parent=MsaT034507.1 |
Chr6 | exon | 113408102 | 113408228 | 113408102 | ID=MsaT034507.1.exon10;Parent=MsaT034507.1 |
Chr6 | CDS | 113408102 | 113408228 | 113408102 | ID=cds.MsaT034507.1;Parent=MsaT034507.1 |
Chr6 | exon | 113408710 | 113408792 | 113408710 | ID=MsaT034507.1.exon11;Parent=MsaT034507.1 |
Chr6 | CDS | 113408710 | 113408792 | 113408710 | ID=cds.MsaT034507.1;Parent=MsaT034507.1 |
Chr6 | exon | 113408881 | 113408938 | 113408881 | ID=MsaT034507.1.exon12;Parent=MsaT034507.1 |
Chr6 | CDS | 113408881 | 113408938 | 113408881 | ID=cds.MsaT034507.1;Parent=MsaT034507.1 |
Chr6 | exon | 113409026 | 113409141 | 113409026 | ID=MsaT034507.1.exon13;Parent=MsaT034507.1 |
Chr6 | CDS | 113409026 | 113409141 | 113409026 | ID=cds.MsaT034507.1;Parent=MsaT034507.1 |
Chr6 | exon | 113409301 | 113409477 | 113409301 | ID=MsaT034507.1.exon14;Parent=MsaT034507.1 |
Chr6 | CDS | 113409301 | 113409477 | 113409301 | ID=cds.MsaT034507.1;Parent=MsaT034507.1 |
Gene Sequence |
Protein sequence |