AlfalfaGEDB | MsaG034511

M. sativa ssp. caerulea / MsaG034511

KEGG: K19477
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: PF00481.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034511	XP_003620565.2	97.108	1072	17	1	1	1058	1	1072	0.0	2137

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034511	sp\|Q9SL76\|P2C19_ARATH	65.732	1106	319	13	1	1058	1	1094	0.0	1441

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034511	tr\|G7KNY7\|G7KNY7_MEDTR	97.108	1072	17	1	1	1058	1	1072	0.0	2137

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034511	MtrunA17_Chr6g0486661	97.108	1072	17	1	1	1058	1	1072	0.0	2137
MsaG034511	MtrunA17_Chr4g0066371	63.399	306	109	3	80	385	42	344	8.28e-131	402
MsaG034511	MtrunA17_Chr2g0286951	63.158	304	109	2	80	383	43	343	1.69e-128	397
MsaG034511	MtrunA17_Chr1g0183651	28.354	328	183	8	741	1020	114	437	1.24e-35	143
MsaG034511	MtrunA17_Chr7g0261491	28.814	354	194	11	741	1041	114	462	2.14e-35	143
MsaG034511	MtrunA17_Chr1g0167311	28.169	355	201	9	716	1020	83	433	1.05e-34	140
MsaG034511	MtrunA17_Chr4g0059751	38.372	172	101	3	841	1009	191	360	2.54e-34	137
MsaG034511	MtrunA17_Chr7g0245031	39.535	172	99	3	841	1009	243	412	1.50e-33	135
MsaG034511	MtrunA17_Chr1g0167351	29.167	312	165	9	760	1020	123	429	1.59e-33	137
MsaG034511	MtrunA17_Chr1g0192421	29.936	314	171	7	90	379	60	348	1.10e-32	130

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034511	AT2G20050.1	65.732	1106	319	13	1	1058	1	1094	0.0	1441
MsaG034511	AT2G20050.2	65.642	1106	317	14	1	1058	1	1091	0.0	1434
MsaG034511	AT3G06270.1	60.458	306	118	2	80	385	44	346	1.61e-123	382
MsaG034511	AT3G23310.1	26.757	370	214	9	703	1020	76	440	7.89e-35	141
MsaG034511	AT5G26010.1	32.215	298	165	7	106	388	56	331	2.21e-34	135
MsaG034511	AT4G14350.2	28.939	311	166	9	760	1020	132	437	1.39e-33	137
MsaG034511	AT4G14350.1	28.939	311	166	9	760	1020	132	437	1.39e-33	137
MsaG034511	AT4G14350.4	28.939	311	166	9	760	1020	132	437	1.39e-33	137
MsaG034511	AT4G14350.3	28.939	311	166	9	760	1020	132	437	1.40e-33	137
MsaG034511	AT3G08720.1	31.022	274	178	6	742	1009	135	403	1.00e-32	134

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Find 221 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATGGGGAGGTACCTA+GGG	0.581768	6:-113473888	MsaT034511.1:CDS
AAAAGTCACTCATGGTTTAA+CGG	0.515952	6:-113470162	MsaT034511.1:CDS
AAAGAGAAAGATTTGATTAA+GGG	0.304516	6:-113471782	MsaT034511.1:CDS
AAAGAGTTAACGTCGAACCT+GGG	0.598587	6:-113474902	MsaT034511.1:CDS
AACAACTGCTATAACGATTT+TGG	0.168530	6:-113477361	MsaT034511.1:CDS
AACAGAAGCAGCACAATATC+GGG	0.478712	6:+113471625	None:intergenic
AACATCATCCTCCGCAACAG+CGG	0.653868	6:+113472768	None:intergenic
AACATTCACAATTTGTGGGA+GGG	0.559694	6:-113471084	MsaT034511.1:CDS
AACTTGCGGTACACAAGCTG+AGG	0.623764	6:+113471751	None:intergenic
AAGAAACTGCGACGAAACCC+TGG	0.569078	6:+113477731	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	113469993	113477940	113469993	ID=MsaG034511
Chr6	mRNA	113469993	113477940	113469993	ID=MsaT034511.1;Parent=MsaG034511
Chr6	exon	113469993	113470238	113469993	ID=MsaT034511.1.exon15;Parent=MsaT034511.1
Chr6	CDS	113469993	113470238	113469993	ID=cds.MsaT034511.1;Parent=MsaT034511.1
Chr6	exon	113470571	113470727	113470571	ID=MsaT034511.1.exon14;Parent=MsaT034511.1
Chr6	CDS	113470571	113470727	113470571	ID=cds.MsaT034511.1;Parent=MsaT034511.1
Chr6	exon	113471026	113471147	113471026	ID=MsaT034511.1.exon13;Parent=MsaT034511.1
Chr6	CDS	113471026	113471147	113471026	ID=cds.MsaT034511.1;Parent=MsaT034511.1
Chr6	exon	113471428	113471493	113471428	ID=MsaT034511.1.exon12;Parent=MsaT034511.1
Chr6	CDS	113471428	113471493	113471428	ID=cds.MsaT034511.1;Parent=MsaT034511.1
Chr6	exon	113471598	113471875	113471598	ID=MsaT034511.1.exon11;Parent=MsaT034511.1
Chr6	CDS	113471598	113471875	113471598	ID=cds.MsaT034511.1;Parent=MsaT034511.1
Chr6	exon	113472193	113472259	113472193	ID=MsaT034511.1.exon10;Parent=MsaT034511.1
Chr6	CDS	113472193	113472259	113472193	ID=cds.MsaT034511.1;Parent=MsaT034511.1
Chr6	exon	113472337	113472412	113472337	ID=MsaT034511.1.exon9;Parent=MsaT034511.1
Chr6	CDS	113472337	113472412	113472337	ID=cds.MsaT034511.1;Parent=MsaT034511.1
Chr6	exon	113472691	113473004	113472691	ID=MsaT034511.1.exon8;Parent=MsaT034511.1
Chr6	CDS	113472691	113473004	113472691	ID=cds.MsaT034511.1;Parent=MsaT034511.1
Chr6	exon	113473080	113473269	113473080	ID=MsaT034511.1.exon7;Parent=MsaT034511.1
Chr6	CDS	113473080	113473269	113473080	ID=cds.MsaT034511.1;Parent=MsaT034511.1
Chr6	exon	113473833	113473915	113473833	ID=MsaT034511.1.exon6;Parent=MsaT034511.1
Chr6	CDS	113473833	113473915	113473833	ID=cds.MsaT034511.1;Parent=MsaT034511.1
Chr6	exon	113474652	113474714	113474652	ID=MsaT034511.1.exon5;Parent=MsaT034511.1
Chr6	CDS	113474652	113474714	113474652	ID=cds.MsaT034511.1;Parent=MsaT034511.1
Chr6	exon	113474884	113475009	113474884	ID=MsaT034511.1.exon4;Parent=MsaT034511.1
Chr6	CDS	113474884	113475009	113474884	ID=cds.MsaT034511.1;Parent=MsaT034511.1
Chr6	exon	113475380	113475610	113475380	ID=MsaT034511.1.exon3;Parent=MsaT034511.1
Chr6	CDS	113475380	113475610	113475380	ID=cds.MsaT034511.1;Parent=MsaT034511.1
Chr6	exon	113475724	113475855	113475724	ID=MsaT034511.1.exon2;Parent=MsaT034511.1
Chr6	CDS	113475724	113475855	113475724	ID=cds.MsaT034511.1;Parent=MsaT034511.1
Chr6	exon	113476915	113477940	113476915	ID=MsaT034511.1.exon1;Parent=MsaT034511.1
Chr6	CDS	113476915	113477940	113476915	ID=cds.MsaT034511.1;Parent=MsaT034511.1

Gene Sequence

>MsaT034511.1

ATGGGATGCATTTATTCAAGAGTATGCATAGGTGAAACATGTAAAGGTTCAAGCATCAATGGTGACCCAATTTCAAGACATGAGCTTCAACAAGCTTTTTCACCATCCTCTGATGGTGGTGAAATTCGAGACCAATTGAATCAGTTAAGCTTAACTAGAGATCCTGAAGCTGGAATAAGAAGGCTAGCCAGGGTTTCGTCGCAGTTTCTTCCACCGGATGGTTCGAGGATTGCGAAGGTTGATTCGGAGAAGTATGAATTACGGTATTCGTATCTTTCTCAGCGAGGTTATTATCCTGATGCTCTTGATAAAGCAAATCAAGATAGTTTTTGTATTCACACGCCGTTTGGAACGGATGTGAATGATCATTTTTTCGGTGTTTTTGATGGTCATGGTGAATTTGGGGCGGAGTGTTCGCAGTTTGTGAAGCGTAGGCTTTGTGAGAATTTATTGAGGAATTCTAAGTTTAATGTTGATCCTGTTGAGGCTTGTCATGCGGCTTTTTTAGCTACGAATTCGCAGTTACATGCTGATGTTTTAGATGATAGTATGAGTGGAACAACTGCTATAACGATTTTGGTTAGAGGGAAGACGGTTTATGTAGCGAATTGTGGTGATTCGAGGGCGGTTATAGCGGAGAAGAAAGGGAAAGATGGTGATATTGTTGCAGTTGATTTGTCTATTGATCAGACACCTTATAGGGTCGATGAGTTAGAAAGAGTGAAACTTTGTGGTGCTAGGGTTCTTACTTTGGATCAAATTGAAGGGTTAAAGAATCCTGAAGTTCCGTGTTGGGGTAGTGATGAAGAAGGCGATGATGGTGATCCTCCTAGGTTGTGGGTCCCAAATGGAATGTATCCTGGTACTGCTTTTACAAGGAGTATTGGTGATTCTATTGCCGAGACTATTGGTGTTGTTGCTAATCCGGAGATTGTTAGTTTTGAACTCACACCTAATAATCCATTTTTTGTTATTGCTAGTGATGGAGTTTTTGAGTTTCTCTCAAGCCAAACTGTGGTTGATATGGTTGCAAAATTTAAAGATCCACGTGATGCTTGTGCAGCTATAGTGGCAGAATCTTATCGACTATGGCTACAGTACGAGACTCGTACAGATGATATTACAGTCATCATTGTGCATATAAATGGACTAAATGAACCTGCTGTCGCTCACTCAGAAAGTTATCGTGAAATTTTACGAACCCCTGTCCCTCAAGTTGTAGAGGTGACAGGTTCAGAATCTCCTTCCACATTTGGATGGAATGCTAGGAATCATCGTGTAAGGCAAGAATTGTCAAGGGCACGCCTCCGAGCAATTGAAAATTCCCTCGAGAATGGACAAGGTTGGGTTCCTCCATCTTCAGCTCACAGAAAGACATGGGAGGAAGAAGCACACATAGAGCAGGCGTTGAATGATCATTTTCTCTTTCGAAAACTTACCGAATCTCAGTGTCATGTTTTATTGGATTGCATGCAAAGAGTTAACGTCGAACCTGGGGATATTATAGTCAAACAGGGTGGTGAAAGTGACTGTTTTTATGTTGTTGGCAGCGGAGAATTTGAAGTCTTGGCAACTCAGGAAGAAAAAGATGGGGAGGTACCTAGGGTTTTGCAGCGCTACACAGCTGAAAAACTATCATGCTTTGGAGAACTTGCTCTGATCGGAACTCTTTGGACTTTAAAGCGAGAAGATTTTCGCGGGATTTTAGTGTCAGAATTCTCTAACTTATCATCATTGAAGTTACTTCGGTCCGTAGATCTCCTCTCCAGATTGTCCATTTTACAACTGAGTCAGATCTCCGACTCCCTTTCTGAAGTTACCTTCTCAAGTGGACAGACAATAATCAATAAAAATGAAGTCCTTGCATTGTACATCATCCAAAAGGGACGTGTAAAATTAACTTTCGATGCTGATTTATTGACAAGTTCAAATACCTACAGCCTCAAGTCCGACATCGAAAATGAGGACGATGATGTACAGAGCGGAACAGAACTGTCAATAGAGAAGCCGGAGGGAAGCTATTTCGGTGAATGGTCCCTTCTTGATCAACACATTGGCTCCTTAACCGCTGTTGCGGAGGATGATGTTGAATGTGCTTTACTAACAAAGGACAAACTTGAATCAGTTATTGGCTCCTTGCAAAAGATTTCTCAGGAAGATCACAAGTTGAGGGATAATTCCGAGGAATTGAATAAAAGCTTTGAATTCTCATCGTTTGATAAAGTCCAGCTCTCAGATTTGGAGTGGAGAAAGACGTTATATTCCACTGACTGCTCTGAGATTGGACTTGCAAATTTAAAAGACTCAGAAAATGTGCTTACTTTGAAGAAATTTTCCAAGCCGAAAGTGAAAAGGCTAGGAAAGGAATCACAAGTCTTGAAAGAGAAAGATTTGATTAAGGGTATGAGCTCCTCAGCTTGTGTACCGCAAGTTTTATGCACCTTTGCCGACCGCATATATGCTGGAATACTGCTAAATACACGTCTTGCCTGCCCTTTGTCTTCCATACTATCAACTCCTTTTAGCGAATCCGCGGCCCGATATTGTGCTGCTTCTGTTGTGATTGCCTTAGAAGACTTGCACAAGAATGGTGTTCTGTATAGAGGTGTCTCGCATGATGTTTTGATGTTGGATCAAAGAGGACATATACAGCTGGTGGACTTCAGATTTGGAAAGAAGCTCTCTGATGAGAGAACATTCACAATTTGTGGGAGGGCAGATTCACTAGCTCCAGAGATTGTTCTCGGAAAAGGCCACAGTTTCCCTGCCGACTGGTGGGCATTGGGAGTTTTAGTATATTTTATGTTATGCGGCGAAATGCCATTTGGATCATGGAGAGAAAATGAACTCGATACAGTTGCCAAAATTGCAAAAAGGAAACTAAATCTTCCTGAAACTTTTAGCCCTGACGCTGTTGATCTCATCTCCAAGTTACTTGATGTGGAAGAAAATACTAGACTTGGTAGCCAAGGTTCTGATTCTGTCAAAAGTCACTCATGGTTTAACGGTATCGACTGGGAAGCACTTAGACACAACGCTTTTCCCGTTCCTCCAGAAATTATTTCTCGTATAACACAATACTTGGAAGTTCGTTATGAGGATTCCTCTGCTTCTATGGAGTCTCCATTAGAAGAGGTGGAAGAACTTAATGTGCCTGAATGGCTTGAAGATTGGTAG

Protein sequence

>MsaT034511.1

MGCIYSRVCIGETCKGSSINGDPISRHELQQAFSPSSDGGEIRDQLNQLSLTRDPEAGIRRLARVSSQFLPPDGSRIAKVDSEKYELRYSYLSQRGYYPDALDKANQDSFCIHTPFGTDVNDHFFGVFDGHGEFGAECSQFVKRRLCENLLRNSKFNVDPVEACHAAFLATNSQLHADVLDDSMSGTTAITILVRGKTVYVANCGDSRAVIAEKKGKDGDIVAVDLSIDQTPYRVDELERVKLCGARVLTLDQIEGLKNPEVPCWGSDEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETIGVVANPEIVSFELTPNNPFFVIASDGVFEFLSSQTVVDMVAKFKDPRDACAAIVAESYRLWLQYETRTDDITVIIVHINGLNEPAVAHSESYREILRTPVPQVVEVTGSESPSTFGWNARNHRVRQELSRARLRAIENSLENGQGWVPPSSAHRKTWEEEAHIEQALNDHFLFRKLTESQCHVLLDCMQRVNVEPGDIIVKQGGESDCFYVVGSGEFEVLATQEEKDGEVPRVLQRYTAEKLSCFGELALIGTLWTLKREDFRGILVSEFSNLSSLKLLRSVDLLSRLSILQLSQISDSLSEVTFSSGQTIINKNEVLALYIIQKGRVKLTFDADLLTSSNTYSLKSDIENEDDDVQSGTELSIEKPEGSYFGEWSLLDQHIGSLTAVAEDDVECALLTKDKLESVIGSLQKISQEDHKLRDNSEELNKSFEFSSFDKVQLSDLEWRKTLYSTDCSEIGLANLKDSENVLTLKKFSKPKVKRLGKESQVLKEKDLIKGMSSSACVPQVLCTFADRIYAGILLNTRLACPLSSILSTPFSESAARYCAASVVIALEDLHKNGVLYRGVSHDVLMLDQRGHIQLVDFRFGKKLSDERTFTICGRADSLAPEIVLGKGHSFPADWWALGVLVYFMLCGEMPFGSWRENELDTVAKIAKRKLNLPETFSPDAVDLISKLLDVEENTRLGSQGSDSVKSHSWFNGIDWEALRHNAFPVPPEIISRITQYLEVRYEDSSASMESPLEEVEELNVPEWLEDW*