AlfalfaGEDB | MsaG034560

M. sativa ssp. caerulea / MsaG034560

KEGG: K00924
GO: GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010468 GO:0019222 GO:0022622 GO:0032501 GO:0032502 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392
PFAM: PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034560	XP_013453187.1	29.318	440	258	5	131	518	42	480	4.14e-37	163
MsaG034560	XP_013453187.1	89.366	931	54	1	1	886	82	1012	0.0	1649

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034560	sp\|Q9SGP2\|HSL1_ARATH	37.916	902	495	16	3	850	69	959	1.10e-173	532
MsaG034560	sp\|Q9SGP2\|HSL1_ARATH	29.854	412	235	7	161	519	57	467	6.99e-36	150
MsaG034560	sp\|Q9SGP2\|HSL1_ARATH	32.479	351	214	8	213	550	62	402	8.62e-32	137
MsaG034560	sp\|Q9SGP2\|HSL1_ARATH	34.146	205	132	2	1	205	379	580	1.35e-20	101

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034560	tr\|A0A072UMX7\|A0A072UMX7_MEDTR	29.318	440	258	5	131	518	42	480	1.98e-37	163
MsaG034560	tr\|A0A072UMX7\|A0A072UMX7_MEDTR	89.366	931	54	1	1	886	82	1012	0.0	1649

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034560	MtrunA17_Chr6g0487061	89.366	931	54	1	1	886	82	1012	0.0	1649
MsaG034560	MtrunA17_Chr6g0487061	29.318	440	258	5	131	518	42	480	3.81e-41	163
MsaG034560	MtrunA17_Chr6g0486961	61.806	919	297	5	1	872	69	980	0.0	1114
MsaG034560	MtrunA17_Chr6g0486961	30.326	399	248	5	157	525	55	453	1.06e-42	168
MsaG034560	MtrunA17_Chr6g0478111	60.127	948	300	9	5	877	81	1025	0.0	1055
MsaG034560	MtrunA17_Chr6g0478111	31.378	392	262	5	4	394	228	613	2.50e-40	161
MsaG034560	MtrunA17_Chr6g0478111	31.367	373	247	5	1	372	249	613	2.48e-39	157
MsaG034560	MtrunA17_Chr6g0478111	35.433	254	108	7	3	231	394	616	2.54e-20	97.1
MsaG034560	MtrunA17_Chr6g0487031	59.037	935	327	9	1	883	80	1010	0.0	1048
MsaG034560	MtrunA17_Chr6g0487031	31.202	391	263	6	131	516	40	429	1.56e-42	167

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034560	AT5G25930.1	48.701	924	417	8	3	876	72	988	0.0	836
MsaG034560	AT5G25930.1	30.458	371	248	8	153	516	55	422	1.79e-38	155
MsaG034560	AT5G25930.1	31.973	294	194	4	1	293	313	601	1.86e-28	123
MsaG034560	AT5G25930.1	29.150	247	145	3	304	520	60	306	2.77e-21	100
MsaG034560	AT1G28440.1	37.916	902	495	16	3	850	69	959	1.11e-174	532
MsaG034560	AT1G28440.1	29.854	412	235	7	161	519	57	467	7.11e-37	150
MsaG034560	AT1G28440.1	32.479	351	214	8	213	550	62	402	8.76e-33	137
MsaG034560	AT1G28440.1	34.146	205	132	2	1	205	379	580	1.37e-21	101
MsaG034560	AT5G65710.1	36.207	928	492	20	5	854	85	990	1.82e-161	498
MsaG034560	AT5G65710.1	29.909	438	243	11	161	536	71	506	2.55e-41	164

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Find 160 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAAAGCCTTGATAGA+TGG	0.405103	6:+114245981	MsaT034560.1:CDS
AAAGAAAGCAATTAATGAGA+AGG	0.547657	6:+114245654	MsaT034560.1:CDS
AAAGTTAGAGAAGAAGCTTG+TGG	0.620311	6:+114245844	MsaT034560.1:CDS
AAATACCTGATGCAATTTGT+CGG	0.561670	6:+114245291	MsaT034560.1:CDS
AACCTTACCTTGTGCAATTC+TGG	0.163149	6:+114245515	MsaT034560.1:CDS
AAGAGACTGCATATAGCCAT+TGG	0.534902	6:+114246070	MsaT034560.1:CDS
AAGATAGATGTCTACAGCTT+TGG	0.438845	6:+114246486	MsaT034560.1:CDS
AAGATCAAGATATTCAAGCT+TGG	0.556030	6:-114244025	None:intergenic
AAGATTCTGAGACAATCTTT+CGG	0.398855	6:-114245015	None:intergenic
AAGCTTGGAACAATTGTATA+AGG	0.301638	6:-114244010	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	114243901	114246860	114243901	ID=MsaG034560
Chr6	mRNA	114243901	114246860	114243901	ID=MsaT034560.1;Parent=MsaG034560
Chr6	exon	114243901	114246103	114243901	ID=MsaT034560.1.exon1;Parent=MsaT034560.1
Chr6	CDS	114243901	114246103	114243901	ID=cds.MsaT034560.1;Parent=MsaT034560.1
Chr6	exon	114246239	114246292	114246239	ID=MsaT034560.1.exon2;Parent=MsaT034560.1
Chr6	CDS	114246239	114246292	114246239	ID=cds.MsaT034560.1;Parent=MsaT034560.1
Chr6	exon	114246457	114246860	114246457	ID=MsaT034560.1.exon3;Parent=MsaT034560.1
Chr6	CDS	114246457	114246860	114246457	ID=cds.MsaT034560.1;Parent=MsaT034560.1

Gene Sequence

>MsaT034560.1

ATGATCAACACAAACATAACTCAAACATTGCCACCTTTCCTATGTGAACTCAAAAACCTCACTTACATTGATTTTCAATACAATTATCTTCCAAATGAGTTTCCAACATCCTTATACAATTGTTCCAAGCTTGAATATCTTGATCTTTCACAAAACTTCTTTGTCGGTAACATACCGAATGATATCAATCGGTTGGCCAGTCTGCAGTTTCTTAGCCTTGGAGCAAACAACTTTTCAGGTGATATTCCAATGAGTATTGGTAAGTTGAAGAATTTAAAAAGTCTTCAAATTTATCAATGTCTTGTTAATGGTAGTATTGCTGATGAAATTGGTGATTTGTTCAATCTTGAAACATTGTTATTGTTCTCAAATCATATGTTACCTAGGACAAAGTTGCCATCTAGTTTTACTAAGTTGAAGAATTTAAGGATGTTTCATATGTATGACTCTAATTTGTATGGTGAGATTCCTGAAACAATTGGTGAAATGATGGCTTTGGAGGATTTGAATTTAGAAGGAAATTTTTTGAGCGGAAAGATTCCAAATGGTTTGTTTGCTTTAAAAAATTTGAGCATACTTTATCTTTACGAGAATAATCTTTCTGGAGAGATACCTGATGTGATTGAAGCGTTCGAGTTAACAAGCTTGGATCTTTCAACGAATAATCTCACCGGAAAAATACCGGATGGTTTTGGAAGTCTCAAAAAGCTTAACTACTTAGGCTTGTCAATGAATCAATTATCCGGAGAGGTACCAGAAAGCATCGGTCATTTGCCGGCTCTGACTGATTTTGTTGTTTTTCAGAACAATTTATCAGGTAGTCTTCCCAAAGATTTTGGTAGGTTTTCTAAACTTGAAACTTTTCAAATTCCTTCTAATAGATTCAATGGAGAACTACCACAGAATTTGTGCTATCATGGAAGGTTAGTTGGTTTAACTGCTTATGACAATAATCTTAGCGGCGAGTTGCCAAAATCTTTAGGTAGTTGTAGCAGTTTACAATATCTGAGAGTTGAGAATAATGAGTTTTCTGGTAACATTCCTAATGGTTTATGGACATCTATGAATTTGTCGCAACTTATGTTAAGTGAAAACAAATTCACCGGTGAGCTTCCCGAAAGATTGTCTCAGAATCTTTCAACACTAGCCATAAGTTACAACTGGTTTTCTGGTAGAATTCCAAATGGAGTTTCTTCTTGGAAGAATGTAGTGAGGTTCAATGCTAGTAACAACTTTTTCAATGGCAGTATTCCATTAGAGCTAACATCTCTTCCTCGGTTAGAAACTCTTCTACTCGATCAGAACCAGCTCACCGGTCAAATTCCATCGGATATAACATCATGGAAGTCTCTAGTAACATTAAACTTGAGCCACAATCAACTATCTGGAGAAATACCTGATGCAATTTGTCGGTTACGTTCTCTTAGTATGTTAGACTTATCAGAAAACAAGATCTCGGGCCGAATTCCACCTCAACTAGCACCTATGAGACTCACAAATCTCAATCTCTCTTCCAATTATTTGACTGGGAGGATTCCGAGTGACCTCGAAAGCCTTGTGTATGACAGAAGCTTTCTGGGAAATTCTGGTCTATGTGCTGATACATTAGTACTAAACCTTACCTTGTGCAATTCTGGAACTAGAAGCAGAAGAAGTGATTCATCTATGTCTAAGGCTATGATCATAATCCTTGTTATAGTAGCTTCTTTAACGGTTTTCTTGGCGGTGTTCTTGTCGATCAGCTTTTACAGAAAAAGAAAGCAATTAATGAGAAGGACATGGAAGCTAACTTCCTTTCAGAGGCTGAGTTTTACAAAATCAAACATTGTGACATCGTTGTCAGAACATAATATCATTGGAAGCGGTGGATTTGGTTCCGTGTACCGTGTTGCTGTTGAAGATTTAGGTTATGTTGCAGTGAAAAAGATAAGGGGAAGTAGCAGAAAGTTAGAGAAGAAGCTTGTGGATTCATTTCTTGCAGAAGTTGAAATACTGAGCAATATTCGGCATAGCAACATTGTGAAGTTGATGTGTTGTATCTCAAGTGATGATTCTCTACTACTTGTATATGAGTATCATGAAAATCAAAGCCTTGATAGATGGCTGCACAAGAAAAGTAAGATACCGGTTGTGTCAGGGACGGTCCATCATAACATCCTTGATTGGCCAAAGAGACTGCATATAGCCATTGGAGCTGCACAAGAAGAACTTGCTACCATGTCAGCTGTGGCCGGAACATTTGGCTATATTGCCCCAGAATATGCTCAAACAATACGAGTCAACGAGAAGATAGATGTCTACAGCTTTGGTGTAGTCCTATTGGAACTGACAACTGGAAAAGAAGCAAATCATGGAGACGAATTCTCGTCTCTTGCAGAATGGGCGTGGCGCCACATTCAGATAGGAACCGATATAGAAGAACTTCTAGACGACGATGCTATGGAACCTAGTAATGTGGAAGAAATGTGCAGCATCTTCAAACTTGGAGTTATGTGCACTTCAACACTACCAGCTAGCAGACCATCAATGAAGGAAGTCGTGAAGATATTGAGCAACTGCAAGGATCCACTCGCCAACGCGGAGAAGATTGTTGATATCTACGATGCTGCTCCACTTCTTAAGAATTTGAAATGGGAAAAGCCGGTTGAATACTCAGTATGA

Protein sequence

>MsaT034560.1

MINTNITQTLPPFLCELKNLTYIDFQYNYLPNEFPTSLYNCSKLEYLDLSQNFFVGNIPNDINRLASLQFLSLGANNFSGDIPMSIGKLKNLKSLQIYQCLVNGSIADEIGDLFNLETLLLFSNHMLPRTKLPSSFTKLKNLRMFHMYDSNLYGEIPETIGEMMALEDLNLEGNFLSGKIPNGLFALKNLSILYLYENNLSGEIPDVIEAFELTSLDLSTNNLTGKIPDGFGSLKKLNYLGLSMNQLSGEVPESIGHLPALTDFVVFQNNLSGSLPKDFGRFSKLETFQIPSNRFNGELPQNLCYHGRLVGLTAYDNNLSGELPKSLGSCSSLQYLRVENNEFSGNIPNGLWTSMNLSQLMLSENKFTGELPERLSQNLSTLAISYNWFSGRIPNGVSSWKNVVRFNASNNFFNGSIPLELTSLPRLETLLLDQNQLTGQIPSDITSWKSLVTLNLSHNQLSGEIPDAICRLRSLSMLDLSENKISGRIPPQLAPMRLTNLNLSSNYLTGRIPSDLESLVYDRSFLGNSGLCADTLVLNLTLCNSGTRSRRSDSSMSKAMIIILVIVASLTVFLAVFLSISFYRKRKQLMRRTWKLTSFQRLSFTKSNIVTSLSEHNIIGSGGFGSVYRVAVEDLGYVAVKKIRGSSRKLEKKLVDSFLAEVEILSNIRHSNIVKLMCCISSDDSLLLVYEYHENQSLDRWLHKKSKIPVVSGTVHHNILDWPKRLHIAIGAAQEELATMSAVAGTFGYIAPEYAQTIRVNEKIDVYSFGVVLLELTTGKEANHGDEFSSLAEWAWRHIQIGTDIEELLDDDAMEPSNVEEMCSIFKLGVMCTSTLPASRPSMKEVVKILSNCKDPLANAEKIVDIYDAAPLLKNLKWEKPVEYSV*