AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG034611

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG034611 MtrunA17_Chr6g0487491 94.163 257 7 1 1 249 1 257 1.21e-180 496
MsaG034611 MtrunA17_Chr3g0135311 81.034 116 22 0 1 116 1 116 1.51e-67 212
MsaG034611 MtrunA17_Chr1g0152011 53.476 187 68 2 1 168 1 187 2.19e-65 206
MsaG034611 MtrunA17_Chr5g0400821 74.790 119 30 0 1 119 1 119 2.77e-65 205
MsaG034611 MtrunA17_Chr4g0028311 77.311 119 27 0 1 119 1 119 4.22e-65 205
MsaG034611 MtrunA17_Chr1g0151941 75.000 120 30 0 1 120 1 120 3.64e-64 200
MsaG034611 MtrunA17_Chr7g0264641 70.400 125 37 0 1 125 1 125 4.95e-63 198
MsaG034611 MtrunA17_Chr4g0072751 78.378 111 24 0 1 111 1 111 3.19e-62 198
MsaG034611 MtrunA17_Chr2g0327351 77.477 111 25 0 1 111 1 111 9.85e-62 196
MsaG034611 MtrunA17_Chr4g0054391 76.364 110 26 0 1 110 1 110 1.31e-60 192
MsaG034611 MtrunA17_Chr1g0187761 57.931 145 60 1 1 145 1 144 1.12e-52 171
MsaG034611 MtrunA17_Chr7g0275911 62.069 116 43 1 1 116 1 115 1.03e-49 163
MsaG034611 MtrunA17_Chr4g0039971 51.235 162 71 3 1 162 2 155 1.74e-49 166
MsaG034611 MtrunA17_Chr7g0274581 49.390 164 80 2 1 162 1 163 2.11e-49 161
MsaG034611 MtrunA17_Chr3g0115821 61.017 118 45 1 1 118 1 117 2.26e-49 165
MsaG034611 MtrunA17_Chr8g0346561 58.400 125 51 1 1 125 1 124 5.04e-49 163
MsaG034611 MtrunA17_Chr4g0037141 48.171 164 81 3 1 163 1 161 5.27e-49 162
MsaG034611 MtrunA17_Chr8g0349261 59.664 119 47 1 1 118 1 119 5.66e-49 163
MsaG034611 MtrunA17_Chr6g0452271 63.559 118 42 1 1 118 1 117 7.58e-49 164
MsaG034611 MtrunA17_Chr7g0261281 53.061 147 61 2 1 147 1 139 7.81e-49 162
MsaG034611 MtrunA17_Chr5g0410961 61.017 118 45 1 1 118 1 117 8.38e-49 164
MsaG034611 MtrunA17_Chr7g0217221 59.091 132 51 2 1 132 1 129 9.51e-49 161
MsaG034611 MtrunA17_Chr1g0203411 62.069 116 43 1 1 116 1 115 1.18e-48 162
MsaG034611 MtrunA17_Chr3g0103281 64.655 116 40 1 1 116 1 115 2.30e-48 162
MsaG034611 MtrunA17_Chr4g0060721 57.031 128 54 1 1 128 2 128 1.78e-47 160
MsaG034611 MtrunA17_Chr2g0323411 60.169 118 46 1 1 118 1 117 2.85e-47 159
MsaG034611 MtrunA17_Chr7g0217741 60.345 116 45 1 1 116 1 115 3.02e-47 159
MsaG034611 MtrunA17_Chr1g0167691 58.475 118 48 1 1 118 1 117 3.59e-47 157
MsaG034611 MtrunA17_Chr4g0042671 61.207 116 44 1 1 116 1 115 1.21e-46 160
MsaG034611 MtrunA17_Chr1g0167661 58.475 118 48 1 1 118 1 117 1.36e-46 155
MsaG034611 MtrunA17_Chr4g0048511 59.664 119 46 2 1 118 1 118 2.11e-46 158
MsaG034611 MtrunA17_Chr3g0131121 47.500 160 76 2 1 160 1 152 4.52e-46 155
MsaG034611 MtrunA17_Chr4g0068061 59.483 116 46 1 1 116 1 115 4.59e-46 156
MsaG034611 MtrunA17_Chr6g0453471 59.483 116 46 1 1 116 1 115 5.80e-46 157
MsaG034611 MtrunA17_Chr8g0385321 58.621 116 47 1 1 116 1 115 9.07e-46 155
MsaG034611 MtrunA17_Chr7g0228891 60.345 116 45 1 1 116 1 115 1.93e-45 153
MsaG034611 MtrunA17_Chr1g0194951 59.483 116 46 1 1 116 1 115 3.09e-45 155
MsaG034611 MtrunA17_Chr2g0281071 57.983 119 48 2 1 118 1 118 3.09e-45 154
MsaG034611 MtrunA17_Chr4g0070611 57.759 116 48 1 1 116 1 115 4.44e-45 153
MsaG034611 MtrunA17_Chr7g0254411 56.000 125 54 1 1 125 1 124 5.09e-45 154
MsaG034611 MtrunA17_Chr3g0092401 56.693 127 54 1 1 127 2 127 5.17e-45 153
MsaG034611 MtrunA17_Chr4g0070641 57.759 116 48 1 1 116 1 115 6.00e-45 148
MsaG034611 MtrunA17_Chr5g0395281 59.322 118 47 1 1 118 1 117 6.04e-45 152
MsaG034611 MtrunA17_Chr1g0193371 58.621 116 47 1 1 116 1 115 1.41e-44 153
MsaG034611 MtrunA17_Chr7g0270891 60.345 116 45 1 1 116 1 115 2.49e-44 152
MsaG034611 MtrunA17_Chr3g0121241 55.263 114 50 1 5 118 35 147 3.57e-44 150
MsaG034611 MtrunA17_Chr4g0022901 58.824 119 47 2 1 118 1 118 5.56e-44 149
MsaG034611 MtrunA17_Chr6g0453211 61.261 111 42 1 1 111 1 110 9.22e-44 150
MsaG034611 MtrunA17_Chr5g0435101 55.172 116 51 1 3 118 2 116 9.32e-44 147
MsaG034611 MtrunA17_Chr4g0057031 56.780 118 50 1 1 118 1 117 1.08e-43 148
MsaG034611 MtrunA17_Chr1g0193801 58.621 116 47 1 1 116 1 115 1.09e-43 151
MsaG034611 MtrunA17_Chr8g0387421 57.759 116 48 1 1 116 1 115 1.32e-43 149
MsaG034611 MtrunA17_Chr2g0311221 61.818 110 41 1 2 111 4 112 1.79e-43 149
MsaG034611 MtrunA17_Chr4g0022931 58.974 117 46 2 1 116 1 116 4.26e-43 147
MsaG034611 MtrunA17_Chr4g0058631 55.932 118 51 1 1 118 1 117 8.04e-43 149
MsaG034611 MtrunA17_Chr4g0022911 57.143 119 49 2 1 118 1 118 1.01e-42 146
MsaG034611 MtrunA17_Chr2g0323351 46.405 153 73 2 1 153 1 144 2.06e-42 144
MsaG034611 MtrunA17_Chr5g0397231 57.658 111 46 1 1 111 1 110 2.80e-42 147
MsaG034611 MtrunA17_Chr3g0110351 56.034 116 50 1 1 116 1 115 3.29e-42 145
MsaG034611 MtrunA17_Chr5g0434571 56.034 116 50 1 1 116 37 151 6.46e-42 146
MsaG034611 MtrunA17_Chr3g0117091 56.780 118 50 1 1 118 1 117 7.89e-42 145
MsaG034611 MtrunA17_Chr2g0330041 56.303 119 51 1 1 119 1 118 9.98e-42 147
MsaG034611 MtrunA17_Chr8g0342541 57.759 116 48 1 1 116 1 115 1.52e-41 145
MsaG034611 MtrunA17_Chr4g0022891 57.018 114 48 1 1 114 1 113 3.33e-41 141
MsaG034611 MtrunA17_Chr7g0269831 38.249 217 108 4 1 204 1 204 3.78e-41 144
MsaG034611 MtrunA17_Chr1g0211161 56.034 116 50 1 3 118 4 118 4.89e-41 140
MsaG034611 MtrunA17_Chr8g0342481 54.622 119 54 0 1 119 1 119 5.76e-41 145
MsaG034611 MtrunA17_Chr2g0309911 57.895 114 47 1 6 119 5 117 5.86e-41 142
MsaG034611 MtrunA17_Chr7g0271241 59.091 110 44 1 1 110 1 109 8.47e-41 144
MsaG034611 MtrunA17_Chr8g0354661 55.046 109 48 1 12 120 37 144 9.42e-41 147
MsaG034611 MtrunA17_Chr7g0240821 40.191 209 100 6 16 201 5 211 1.25e-40 139
MsaG034611 MtrunA17_Chr8g0342521 49.645 141 63 2 1 134 1 140 1.61e-40 142
MsaG034611 MtrunA17_Chr6g0470971 47.917 144 73 2 4 147 6 147 1.89e-39 138
MsaG034611 MtrunA17_Chr4g0022881 53.043 115 53 1 1 115 1 114 2.24e-39 136
MsaG034611 MtrunA17_Chr1g0203441 53.846 117 52 2 1 116 1 116 8.67e-38 133
MsaG034611 MtrunA17_Chr3g0080861 53.211 109 50 1 12 120 37 144 9.32e-38 138
MsaG034611 MtrunA17_Chr4g0055981 41.765 170 77 3 9 157 52 220 3.98e-37 130
MsaG034611 MtrunA17_Chr5g0434931 56.481 108 46 1 12 119 35 141 5.37e-37 131
MsaG034611 MtrunA17_Chr8g0343831 52.586 116 50 2 1 116 1 111 1.69e-36 129
MsaG034611 MtrunA17_Chr4g0044421 51.282 117 55 2 3 118 2 117 1.88e-36 127
MsaG034611 MtrunA17_Chr3g0099131 50.450 111 54 1 10 120 39 148 2.61e-36 134
MsaG034611 MtrunA17_Chr5g0434911 53.097 113 52 1 7 119 16 127 5.04e-36 129
MsaG034611 MtrunA17_Chr1g0209661 53.211 109 50 1 8 116 23 130 7.09e-36 129
MsaG034611 MtrunA17_Chr5g0417821 53.271 107 49 1 12 118 7 112 1.03e-35 128
MsaG034611 MtrunA17_Chr2g0328771 51.724 116 55 1 12 127 20 134 1.15e-35 129
MsaG034611 MtrunA17_Chr3g0088461 54.128 109 49 1 8 116 18 125 1.53e-35 129
MsaG034611 MtrunA17_Chr1g0194301 53.211 109 50 1 8 116 29 136 1.66e-35 127
MsaG034611 MtrunA17_Chr6g0450101 48.837 129 63 2 1 127 1 128 1.94e-35 125
MsaG034611 MtrunA17_Chr7g0228231 55.769 104 45 1 12 115 14 116 5.81e-35 124
MsaG034611 MtrunA17_Chr4g0032401 53.774 106 48 1 11 116 16 120 1.04e-34 127
MsaG034611 MtrunA17_Chr5g0434831 53.271 107 49 1 12 118 7 112 1.68e-34 122
MsaG034611 MtrunA17_Chr1g0186061 50.450 111 54 1 6 116 14 123 2.01e-34 124
MsaG034611 MtrunA17_Chr7g0220341 54.545 110 47 2 12 119 25 133 2.47e-34 124
MsaG034611 MtrunA17_Chr7g0228991 54.630 108 48 1 12 119 29 135 8.53e-34 123
MsaG034611 MtrunA17_Chr1g0192411 47.500 120 62 1 1 120 1 119 2.92e-33 124
MsaG034611 MtrunA17_Chr1g0194291 50.435 115 56 1 2 116 11 124 3.90e-33 121
MsaG034611 MtrunA17_Chr2g0322521 50.893 112 54 1 9 120 26 136 7.56e-33 123
MsaG034611 MtrunA17_Chr1g0154031 50.926 108 52 1 12 119 76 182 1.21e-32 123
MsaG034611 MtrunA17_Chr8g0360111 53.922 102 46 1 12 113 25 125 1.73e-32 119
MsaG034611 MtrunA17_Chr1g0168661 52.885 104 48 1 13 116 22 124 1.83e-32 119
MsaG034611 MtrunA17_Chr5g0434841 51.402 107 51 1 12 118 20 125 2.43e-32 120
MsaG034611 MtrunA17_Chr4g0042611 57.303 89 37 1 1 89 1 88 6.58e-32 112
MsaG034611 MtrunA17_Chr5g0440781 40.260 154 84 4 12 158 12 164 1.40e-31 115
MsaG034611 MtrunA17_Chr5g0440761 40.523 153 83 4 13 158 13 164 3.64e-31 115
MsaG034611 MtrunA17_Chr2g0294811 54.839 93 41 1 1 93 1 92 4.03e-31 111
MsaG034611 MtrunA17_Chr8g0334881 49.541 109 53 2 8 115 6 113 6.04e-31 116
MsaG034611 MtrunA17_Chr5g0441141 40.260 154 84 4 12 158 12 164 7.05e-31 115
MsaG034611 MtrunA17_Chr1g0180391 51.429 105 50 1 12 116 19 122 1.20e-30 113
MsaG034611 MtrunA17_Chr5g0441131 48.182 110 55 2 12 120 9 117 6.81e-30 110
MsaG034611 MtrunA17_Chr4g0068921 48.031 127 63 2 8 134 20 143 1.08e-29 110
MsaG034611 MtrunA17_Chr2g0293911 52.778 108 50 1 8 115 20 126 1.97e-29 112
MsaG034611 MtrunA17_Chr2g0327821 46.296 108 57 1 9 116 3 109 2.41e-29 110
MsaG034611 MtrunA17_Chr7g0247131 63.514 74 27 0 43 116 8 81 3.07e-29 110
MsaG034611 MtrunA17_Chr4g0008551 50.909 110 51 3 11 120 36 142 2.84e-28 110
MsaG034611 MtrunA17_Chr4g0013361 45.872 109 57 2 8 115 6 113 5.04e-28 108
MsaG034611 MtrunA17_Chr8g0342461 54.444 90 41 0 1 90 1 90 1.28e-27 103
MsaG034611 MtrunA17_Chr8g0342511 56.322 87 37 1 1 87 1 86 1.76e-27 101
MsaG034611 MtrunA17_Chr8g0342471 54.444 90 41 0 1 90 1 90 2.31e-27 102
MsaG034611 MtrunA17_Chr3g0133601 48.649 111 55 2 14 124 37 145 2.97e-27 104
MsaG034611 MtrunA17_Chr8g0342531 53.333 90 41 1 1 90 1 89 7.56e-27 102
MsaG034611 MtrunA17_Chr5g0395221 53.933 89 40 1 1 89 1 88 1.20e-26 99.0
MsaG034611 MtrunA17_Chr4g0030881 43.243 111 55 2 13 116 8 117 1.73e-26 103
MsaG034611 MtrunA17_Chr6g0454921 41.259 143 80 3 14 156 15 153 1.80e-26 102
MsaG034611 MtrunA17_Chr3g0099141 50.000 88 43 1 8 95 36 122 2.04e-26 100
MsaG034611 MtrunA17_Chr5g0401731 47.573 103 52 2 14 116 15 115 8.34e-26 103
MsaG034611 MtrunA17_Chr4g0053431 49.515 103 50 2 14 116 5 105 1.54e-25 101
MsaG034611 MtrunA17_Chr7g0229131 57.333 75 32 0 46 120 5 79 7.90e-25 97.1
MsaG034611 MtrunA17_Chr5g0434901 61.111 72 28 0 43 114 3 74 1.74e-24 94.4
MsaG034611 MtrunA17_Chr2g0323321 47.312 93 47 2 1 93 1 91 2.58e-24 93.6
MsaG034611 MtrunA17_Chr4g0058991 42.202 109 61 2 9 117 204 310 4.33e-24 100
MsaG034611 MtrunA17_Chr7g0229101 60.870 69 27 0 46 114 5 73 5.91e-24 95.5
MsaG034611 MtrunA17_Chr3g0093811 61.111 72 28 0 45 116 14 85 5.62e-23 94.4
MsaG034611 MtrunA17_Chr5g0429661 38.462 117 69 3 1 116 108 222 3.27e-22 93.6
MsaG034611 MtrunA17_Chr3g0117511 40.171 117 66 3 3 117 170 284 6.83e-22 94.0
MsaG034611 MtrunA17_Chr5g0437321 47.000 100 51 2 14 113 19 116 1.58e-21 90.9
MsaG034611 MtrunA17_Chr7g0238631 45.631 103 54 2 14 116 113 213 1.64e-21 93.2
MsaG034611 MtrunA17_Chr5g0425591 45.882 85 44 2 13 96 10 93 2.76e-21 85.1
MsaG034611 MtrunA17_Chr5g0417621 34.810 158 92 4 10 160 130 283 7.29e-21 90.9
MsaG034611 MtrunA17_Chr6g0480581 43.269 104 53 3 14 115 4 103 1.49e-20 87.4
MsaG034611 MtrunA17_Chr7g0238651 36.066 122 77 1 14 134 7 128 8.60e-20 87.0
MsaG034611 MtrunA17_Chr6g0453751 43.011 93 45 2 12 96 20 112 1.11e-19 82.0
MsaG034611 MtrunA17_Chr6g0460661 41.346 104 55 3 10 111 12 111 1.18e-19 83.2
MsaG034611 MtrunA17_Chr5g0397841 46.465 99 50 3 12 110 109 204 1.77e-19 87.0
MsaG034611 MtrunA17_Chr1g0157731 39.806 103 60 2 14 116 91 191 2.65e-19 87.0
MsaG034611 MtrunA17_Chr4g0042501 40.909 110 63 2 14 123 105 212 3.99e-19 85.9
MsaG034611 MtrunA17_Chr3g0125801 42.202 109 61 2 8 116 10 116 5.29e-19 84.0
MsaG034611 MtrunA17_Chr3g0139671 39.806 103 60 2 14 116 85 185 6.50e-19 85.9
MsaG034611 MtrunA17_Chr7g0228531 42.241 116 60 4 12 123 218 330 1.40e-18 84.3
MsaG034611 MtrunA17_Chr8g0362231 40.541 111 61 3 17 127 25 130 6.90e-18 82.4
MsaG034611 MtrunA17_Chr5g0416341 39.831 118 68 3 17 133 29 144 7.75e-18 82.0
MsaG034611 MtrunA17_Chr7g0254261 36.111 144 77 3 14 144 89 230 6.00e-17 79.0
MsaG034611 MtrunA17_Chr7g0228401 42.667 75 42 1 37 111 301 374 1.78e-16 78.2
MsaG034611 MtrunA17_Chr6g0460671 39.806 103 60 2 14 116 99 199 7.05e-16 75.9
MsaG034611 MtrunA17_Chr7g0228481 39.655 116 63 4 12 123 218 330 9.79e-16 75.9
MsaG034611 MtrunA17_Chr1g0177901 47.619 63 33 0 49 111 27 89 1.30e-15 73.2
MsaG034611 MtrunA17_Chr7g0233061 44.444 63 35 0 49 111 211 273 1.14e-14 72.4
MsaG034611 MtrunA17_Chr7g0247141 57.447 47 20 0 1 47 1 47 1.29e-14 66.6
MsaG034611 MtrunA17_Chr1g0193901 48.333 60 29 2 11 69 10 68 6.70e-13 63.5
MsaG034611 MtrunA17_Chr1g0193891 48.333 60 29 2 11 69 10 68 6.70e-13 63.5
MsaG034611 MtrunA17_Chr1g0193871 48.333 60 29 2 11 69 10 68 6.70e-13 63.5
MsaG034611 MtrunA17_Chr1g0193881 48.333 60 29 2 11 69 10 68 6.70e-13 63.5
MsaG034611 MtrunA17_Chr5g0434871 57.778 45 19 0 75 119 2 46 7.93e-12 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG034611 AT3G49690.1 75.424 118 29 0 1 118 1 118 9.88e-65 204
MsaG034611 AT5G65790.1 76.271 118 28 0 1 118 1 118 1.55e-64 206
MsaG034611 AT2G36890.1 75.630 119 29 0 1 119 1 119 1.10e-63 201
MsaG034611 AT5G23000.1 77.586 116 26 0 1 116 1 116 1.15e-63 202
MsaG034611 AT4G37780.1 72.269 119 33 0 1 119 1 119 1.93e-63 201
MsaG034611 AT2G36890.2 75.630 119 29 0 1 119 42 160 1.99e-63 202
MsaG034611 AT5G57620.1 73.950 119 31 0 1 119 1 119 3.62e-62 198
MsaG034611 AT5G16770.4 41.453 234 125 5 1 234 1 222 1.16e-50 168
MsaG034611 AT5G16770.3 41.453 234 125 5 1 234 1 222 1.16e-50 168
MsaG034611 AT5G16770.1 41.453 234 125 5 1 234 1 222 4.00e-50 167
MsaG034611 AT5G16770.2 41.453 234 125 5 1 234 1 222 4.00e-50 167
MsaG034611 AT4G28110.1 61.864 118 44 1 1 118 1 117 5.13e-50 165
MsaG034611 AT3G47600.1 54.000 150 60 2 1 142 1 149 4.74e-49 164
MsaG034611 AT3G23250.1 62.069 116 43 1 1 116 1 115 4.89e-49 163
MsaG034611 AT3G02940.2 59.322 118 47 1 1 118 1 117 6.97e-49 163
MsaG034611 AT3G01140.2 45.902 183 92 3 1 180 1 179 9.97e-49 164
MsaG034611 AT3G61250.1 58.824 119 48 1 1 119 1 118 1.33e-48 162
MsaG034611 AT5G62470.2 55.862 145 61 2 1 143 1 144 1.43e-48 164
MsaG034611 AT3G02940.1 59.322 118 47 1 1 118 1 117 1.49e-48 163
MsaG034611 AT3G02940.3 59.322 118 47 1 1 118 1 117 1.49e-48 163
MsaG034611 AT2G31180.1 54.110 146 64 2 1 144 1 145 1.52e-48 160
MsaG034611 AT1G16490.1 61.739 115 43 1 2 116 4 117 3.48e-48 160
MsaG034611 AT5G15310.4 61.017 118 45 1 1 118 1 117 4.06e-48 159
MsaG034611 AT5G56110.1 63.793 116 41 1 1 116 1 115 4.39e-48 161
MsaG034611 AT1G22640.1 57.143 119 50 1 1 119 1 118 6.55e-48 159
MsaG034611 AT4G34990.1 48.125 160 73 2 1 151 1 159 6.93e-48 160
MsaG034611 AT5G15310.1 61.017 118 45 1 1 118 1 117 7.99e-48 161
MsaG034611 AT5G15310.2 61.017 118 45 1 1 118 1 117 1.00e-47 160
MsaG034611 AT1G79180.1 59.677 124 49 1 2 125 4 126 1.06e-47 160
MsaG034611 AT5G49330.1 54.676 139 51 2 1 139 1 127 1.62e-47 160
MsaG034611 AT4G17785.2 61.345 119 44 2 1 118 1 118 2.07e-47 160
MsaG034611 AT4G17785.1 61.345 119 44 2 1 118 1 118 2.91e-47 160
MsaG034611 AT3G12820.1 62.931 116 42 1 3 118 5 119 3.01e-47 157
MsaG034611 AT2G47460.1 61.207 116 44 1 1 116 1 115 3.81e-47 160
MsaG034611 AT1G06180.1 55.797 138 58 2 1 138 1 135 4.64e-47 157
MsaG034611 AT4G21440.1 59.322 118 47 1 1 118 1 117 5.76e-47 159
MsaG034611 AT1G56160.1 56.522 138 58 2 2 139 4 139 6.68e-47 158
MsaG034611 AT5G62470.1 55.862 145 60 3 1 143 1 143 7.86e-47 159
MsaG034611 AT1G74650.1 61.017 118 45 1 1 118 1 117 1.81e-46 157
MsaG034611 AT2G16720.1 57.143 119 50 1 1 119 1 118 1.99e-46 155
MsaG034611 AT3G62610.1 61.207 116 44 1 1 116 1 115 2.34e-46 157
MsaG034611 AT4G38620.1 56.780 118 50 1 1 118 1 117 2.76e-46 156
MsaG034611 AT4G09460.1 57.143 119 50 1 1 119 1 118 4.66e-46 154
MsaG034611 AT1G08810.1 61.207 116 44 1 1 116 1 115 8.25e-46 154
MsaG034611 AT3G01140.1 45.000 180 92 3 4 180 47 222 1.39e-45 157
MsaG034611 AT5G65230.1 57.627 118 49 1 1 118 1 117 1.45e-45 155
MsaG034611 AT3G13540.1 57.895 114 47 1 5 118 16 128 1.86e-45 152
MsaG034611 AT5G10280.1 57.627 118 49 1 1 118 1 117 3.45e-45 154
MsaG034611 AT4G01680.3 59.483 116 46 1 1 116 1 115 5.48e-45 151
MsaG034611 AT1G34670.1 58.475 118 48 1 1 118 1 117 5.77e-45 154
MsaG034611 AT3G28470.1 62.162 111 41 1 1 111 1 110 5.81e-45 153
MsaG034611 AT3G28910.1 61.207 116 44 1 1 116 1 115 6.10e-45 153
MsaG034611 AT1G35515.1 55.932 118 51 1 1 118 1 117 1.78e-44 149
MsaG034611 AT4G05100.1 57.983 119 48 2 1 118 1 118 3.13e-44 152
MsaG034611 AT4G01680.1 59.483 116 46 1 1 116 1 115 3.39e-44 152
MsaG034611 AT4G12350.1 57.627 118 49 1 1 118 1 117 3.73e-44 150
MsaG034611 AT5G14340.1 59.829 117 46 1 1 117 13 128 6.69e-44 149
MsaG034611 AT4G22680.1 55.932 118 51 1 1 118 1 117 3.14e-43 147
MsaG034611 AT1G57560.1 47.771 157 64 2 1 140 1 156 3.29e-43 149
MsaG034611 AT1G63910.1 56.897 116 49 1 1 116 1 115 5.35e-43 149
MsaG034611 AT1G57560.2 56.780 118 50 1 1 118 1 117 7.14e-43 147
MsaG034611 AT3G13890.2 57.143 119 50 1 1 119 1 118 9.65e-43 149
MsaG034611 AT5G26660.1 56.897 116 49 1 1 116 1 115 2.34e-42 147
MsaG034611 AT5G61420.2 43.713 167 78 3 1 153 1 165 4.12e-42 147
MsaG034611 AT1G09540.1 56.897 116 49 1 1 116 1 115 5.15e-42 147
MsaG034611 AT5G07690.1 56.522 115 49 1 1 115 1 114 7.20e-42 146
MsaG034611 AT1G66230.1 56.034 116 50 1 1 116 1 115 1.28e-41 144
MsaG034611 AT5G16600.1 56.034 116 50 1 1 116 1 115 2.17e-41 144
MsaG034611 AT1G79180.2 46.497 157 50 2 2 125 4 159 2.80e-41 144
MsaG034611 AT1G74080.1 54.237 118 53 1 1 118 1 117 4.13e-41 144
MsaG034611 AT5G62320.1 52.033 123 53 1 2 118 3 125 4.77e-41 141
MsaG034611 AT5G60890.1 55.172 116 51 1 1 116 1 115 5.81e-41 142
MsaG034611 AT4G01680.2 53.906 128 46 2 1 116 1 127 8.49e-41 143
MsaG034611 AT5G07700.1 53.390 118 54 1 1 118 1 117 6.53e-40 140
MsaG034611 AT5G07700.2 53.390 118 54 1 1 118 1 117 6.53e-40 140
MsaG034611 AT1G74430.1 56.034 116 50 1 1 116 1 115 7.44e-40 139
MsaG034611 AT3G12720.1 55.263 114 50 1 6 119 16 128 9.04e-40 139
MsaG034611 AT3G13890.1 53.125 128 50 2 1 119 1 127 9.88e-40 141
MsaG034611 AT5G54230.1 33.700 273 124 6 1 231 1 258 1.13e-39 140
MsaG034611 AT1G18570.1 53.782 119 53 2 1 118 1 118 9.65e-39 138
MsaG034611 AT5G06100.1 52.212 113 53 1 8 120 28 139 1.22e-38 140
MsaG034611 AT5G35550.1 39.000 200 85 6 9 198 11 183 2.71e-38 134
MsaG034611 AT5G52600.1 57.407 108 45 1 9 116 9 115 2.88e-38 132
MsaG034611 AT5G55020.1 54.128 109 49 1 12 120 26 133 3.07e-38 140
MsaG034611 AT5G06100.5 52.212 113 53 1 8 120 28 139 4.37e-38 139
MsaG034611 AT5G06100.2 52.212 113 53 1 8 120 28 139 4.37e-38 139
MsaG034611 AT5G06100.3 52.212 113 53 1 8 120 28 139 4.37e-38 139
MsaG034611 AT5G06100.4 52.212 113 53 1 8 120 28 139 4.37e-38 139
MsaG034611 AT5G40330.1 53.571 112 51 1 13 124 13 123 5.25e-38 132
MsaG034611 AT5G14750.1 55.769 104 45 1 13 116 17 119 1.59e-37 131
MsaG034611 AT3G27920.1 53.571 112 51 1 13 124 15 125 1.97e-37 131
MsaG034611 AT1G18710.1 52.586 116 54 1 1 116 1 115 2.05e-37 132
MsaG034611 AT2G32460.1 52.294 109 51 1 12 120 18 125 2.17e-37 137
MsaG034611 AT2G32460.2 52.294 109 51 1 12 120 6 113 2.33e-37 137
MsaG034611 AT4G26930.1 55.769 104 45 1 12 115 19 121 3.48e-37 135
MsaG034611 AT3G27810.1 46.667 135 71 1 9 143 17 150 4.59e-37 130
MsaG034611 AT3G11440.2 48.214 112 57 1 9 120 38 148 1.98e-36 134
MsaG034611 AT3G11440.3 48.214 112 57 1 9 120 38 148 8.44e-36 134
MsaG034611 AT3G11440.4 48.214 112 57 1 9 120 38 148 8.44e-36 134
MsaG034611 AT3G11440.1 48.214 112 57 1 9 120 38 148 8.44e-36 134
MsaG034611 AT5G12870.1 54.717 106 47 1 11 116 17 121 1.34e-35 128
MsaG034611 AT5G40350.1 52.174 115 54 1 10 124 15 128 1.97e-35 125
MsaG034611 AT1G66370.1 50.427 117 53 2 1 117 1 112 3.43e-35 126
MsaG034611 AT1G66380.1 54.717 106 47 1 12 117 8 112 1.19e-34 121
MsaG034611 AT5G52260.1 47.287 129 67 1 9 137 9 136 1.31e-34 125
MsaG034611 AT3G01530.1 39.355 155 93 1 8 162 21 174 1.48e-34 123
MsaG034611 AT1G25340.1 34.802 227 143 3 13 239 19 240 1.68e-34 125
MsaG034611 AT3G48920.1 38.798 183 83 3 9 165 15 194 3.11e-34 124
MsaG034611 AT1G48000.1 56.190 105 45 1 11 115 31 134 6.63e-34 122
MsaG034611 AT3G08500.1 53.211 109 50 1 8 116 26 133 6.87e-34 125
MsaG034611 AT4G25560.1 48.696 115 58 1 11 125 9 122 9.94e-34 123
MsaG034611 AT1G68320.1 52.830 106 49 1 11 116 18 122 3.69e-33 122
MsaG034611 AT2G26960.1 47.664 107 55 1 9 115 17 122 4.14e-33 124
MsaG034611 AT2G47190.1 35.577 208 114 6 8 207 16 211 4.60e-33 121
MsaG034611 AT3G24310.1 54.808 104 46 1 13 116 19 121 5.47e-33 121
MsaG034611 AT1G56650.1 52.830 106 49 1 12 117 8 112 6.27e-33 120
MsaG034611 AT3G30210.1 53.398 103 47 1 13 115 28 129 9.78e-33 120
MsaG034611 AT1G66390.1 53.774 106 48 1 12 117 8 112 1.27e-32 119
MsaG034611 AT4G13480.1 53.846 104 47 1 13 116 7 109 1.77e-32 119
MsaG034611 AT3G06490.1 56.481 108 46 1 8 115 15 121 7.36e-31 117
MsaG034611 AT3G53200.1 50.000 110 54 1 12 121 9 117 1.88e-30 114
MsaG034611 AT1G25340.2 33.480 227 141 4 13 239 19 235 9.84e-30 112
MsaG034611 AT1G25340.3 33.480 227 141 4 13 239 19 235 1.62e-29 113
MsaG034611 AT5G59780.3 44.444 108 59 1 9 116 5 111 2.44e-29 110
MsaG034611 AT3G46130.1 46.154 104 55 1 13 116 10 112 3.88e-29 110
MsaG034611 AT3G60460.1 47.222 108 55 2 9 115 8 114 2.43e-28 109
MsaG034611 AT5G49620.1 54.808 104 46 1 12 115 26 128 4.90e-28 108
MsaG034611 AT5G26660.2 60.274 73 29 0 44 116 12 84 9.69e-28 108
MsaG034611 AT5G14750.3 58.974 78 29 1 39 116 11 85 1.47e-27 104
MsaG034611 AT3G47600.2 50.476 105 44 1 46 142 39 143 1.91e-27 107
MsaG034611 AT5G35550.2 44.915 118 53 2 39 146 43 158 3.20e-27 105
MsaG034611 AT2G23290.1 51.456 103 48 2 14 116 13 113 7.47e-27 105
MsaG034611 AT3G09230.1 46.364 110 56 3 9 118 51 157 1.49e-26 106
MsaG034611 AT3G12820.2 62.857 70 26 0 49 118 2 71 3.57e-26 101
MsaG034611 AT3G27810.2 45.545 101 55 0 43 143 1 101 5.28e-26 100
MsaG034611 AT4G37260.1 43.902 123 59 3 14 128 13 133 2.18e-25 102
MsaG034611 AT3G55730.1 48.182 110 54 3 9 118 52 158 2.20e-25 103
MsaG034611 AT3G50060.1 45.946 111 58 2 14 124 6 114 2.87e-25 101
MsaG034611 AT1G66380.3 61.644 73 28 0 45 117 7 79 6.88e-25 95.5
MsaG034611 AT5G40350.2 54.430 79 36 0 46 124 5 83 8.44e-25 97.1
MsaG034611 AT5G49620.2 48.305 118 46 2 12 115 26 142 1.71e-24 99.8
MsaG034611 AT2G26950.1 41.346 104 60 1 9 112 13 115 1.72e-24 100
MsaG034611 AT3G46130.4 54.054 74 34 0 43 116 17 90 2.03e-24 97.8
MsaG034611 AT5G59780.2 54.054 74 34 0 43 116 17 90 2.14e-24 97.4
MsaG034611 AT3G46130.3 55.556 72 32 0 45 116 9 80 3.07e-24 97.1
MsaG034611 AT3G53200.2 53.165 79 37 0 43 121 6 84 5.67e-24 95.9
MsaG034611 AT3G27785.1 36.296 135 84 2 9 143 184 316 1.53e-23 98.6
MsaG034611 AT1G71030.2 46.237 93 49 1 52 143 5 97 2.56e-23 93.6
MsaG034611 AT2G39880.1 47.222 108 54 3 9 116 46 150 2.57e-23 97.4
MsaG034611 AT1G71030.1 46.237 93 49 1 52 143 19 111 3.21e-23 93.6
MsaG034611 AT5G40360.1 38.462 117 70 2 9 125 153 267 3.59e-23 96.7
MsaG034611 AT5G67300.1 46.602 103 53 2 14 116 6 106 7.35e-23 95.1
MsaG034611 AT1G18960.1 44.144 111 55 3 6 116 5 108 2.17e-22 94.0
MsaG034611 AT5G02320.1 44.660 103 55 2 14 116 127 227 4.45e-22 95.1
MsaG034611 AT5G02320.2 44.660 103 55 2 14 116 127 227 4.45e-22 95.1
MsaG034611 AT5G02320.3 44.660 103 55 2 14 116 67 167 5.67e-22 94.7
MsaG034611 AT4G18770.1 38.532 109 65 2 9 117 212 318 8.81e-22 93.6
MsaG034611 AT1G69560.1 41.739 115 65 2 9 123 102 214 1.50e-21 92.0
MsaG034611 AT1G69560.2 41.739 115 65 2 9 123 118 230 1.57e-21 92.0
MsaG034611 AT3G09370.2 42.718 103 57 2 14 116 135 235 3.98e-21 92.4
MsaG034611 AT3G09370.1 42.718 103 57 2 14 116 130 230 4.00e-21 92.4
MsaG034611 AT3G09370.3 42.718 103 57 2 14 116 143 243 5.46e-21 92.0
MsaG034611 AT5G58850.1 39.831 118 65 4 14 127 105 220 1.74e-20 90.1
MsaG034611 AT1G17950.1 42.718 103 57 2 14 116 5 105 4.57e-20 86.7
MsaG034611 AT1G26780.1 40.000 120 70 2 14 133 98 215 5.49e-20 87.0
MsaG034611 AT2G25230.1 30.045 223 131 5 9 231 21 218 6.28e-20 85.9
MsaG034611 AT1G22640.3 55.738 61 27 0 59 119 1 61 6.54e-20 85.1
MsaG034611 AT1G73410.1 44.660 103 55 2 14 116 6 106 1.01e-19 85.5
MsaG034611 AT1G26780.2 40.000 120 70 2 14 133 98 215 1.10e-19 87.0
MsaG034611 AT4G33450.1 39.394 132 71 4 3 134 13 135 1.36e-19 85.1
MsaG034611 AT1G73410.2 44.660 103 55 2 14 116 6 106 1.77e-19 84.0
MsaG034611 AT1G66380.2 46.341 82 43 1 12 93 8 88 1.97e-19 81.3
MsaG034611 AT3G23250.2 60.345 58 23 0 59 116 1 58 3.17e-19 84.0
MsaG034611 AT5G11510.3 37.864 103 62 2 14 116 81 181 7.97e-19 85.9
MsaG034611 AT5G11510.1 37.864 103 62 2 14 116 81 181 7.97e-19 85.9
MsaG034611 AT5G11510.4 37.864 103 62 2 14 116 81 181 7.97e-19 85.9
MsaG034611 AT5G11510.2 36.792 106 65 2 11 116 78 181 1.08e-18 85.5
MsaG034611 AT5G11510.5 36.792 106 65 2 11 116 78 181 1.11e-18 85.5
MsaG034611 AT5G14750.4 56.897 58 25 0 59 116 1 58 1.92e-18 79.7
MsaG034611 AT5G14750.2 56.897 58 25 0 59 116 1 58 1.92e-18 79.7
MsaG034611 AT5G17800.1 42.857 105 54 3 14 116 93 193 3.66e-18 82.4
MsaG034611 AT5G40430.1 35.714 140 77 4 9 138 49 185 5.18e-18 81.3
MsaG034611 AT4G32730.5 38.938 113 59 4 14 120 87 195 5.96e-18 83.2
MsaG034611 AT4G32730.4 38.938 113 59 4 14 120 87 195 5.96e-18 83.2
MsaG034611 AT4G32730.3 38.938 113 59 4 14 120 87 195 5.96e-18 83.2
MsaG034611 AT4G32730.2 38.938 113 59 4 14 120 87 195 5.96e-18 83.2
MsaG034611 AT4G32730.1 38.938 113 59 4 14 120 87 195 6.77e-18 83.2
MsaG034611 AT5G11050.1 35.238 105 66 2 12 116 103 205 1.01e-17 82.0
MsaG034611 AT4G00540.2 39.450 109 59 2 12 116 101 206 1.78e-17 81.3
MsaG034611 AT2G02820.3 39.286 112 66 2 17 128 33 142 1.91e-17 80.5
MsaG034611 AT2G02820.2 39.286 112 66 2 17 128 33 142 1.97e-17 81.6
MsaG034611 AT2G02820.1 39.286 112 66 2 17 128 33 142 2.68e-17 80.9
MsaG034611 AT4G00540.1 39.450 109 59 2 12 116 99 204 2.96e-17 80.9
MsaG034611 AT2G37630.1 39.000 100 60 1 13 111 3 102 7.25e-17 79.3
MsaG034611 AT3G29020.1 34.127 126 81 2 14 139 65 188 1.22e-16 77.0
MsaG034611 AT1G14350.2 38.739 111 66 2 17 127 28 136 1.26e-16 79.0
MsaG034611 AT1G14350.1 38.739 111 66 2 17 127 28 136 1.26e-16 79.0
MsaG034611 AT3G29020.2 34.127 126 81 2 14 139 67 190 1.34e-16 77.8
MsaG034611 AT5G39700.1 36.000 125 75 4 9 133 51 170 5.52e-12 63.2
MsaG034611 AT4G25560.2 47.273 55 29 0 71 125 2 56 6.47e-11 60.8

Find 32 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGATGGTTGAACTATTTA+AGG 0.151954 6:+115065791 MsaT034611.1:CDS
TATTCCTTTACCAATTAAAA+TGG 0.194308 6:+115066616 MsaT034611.1:CDS
GGTAAAGGAATATTATTAAT+TGG 0.215694 6:-115066605 None:intergenic
AAACACTACATTCAAGAAAA+TGG 0.276016 6:+115065294 MsaT034611.1:CDS
TGGTAATTGTGCTGCTATAA+AGG 0.287462 6:-115066348 None:intergenic
AAAATGGCAATGCTGGTAAT+TGG 0.287812 6:+115065310 MsaT034611.1:CDS
ACGTCATTATCTGTTCTTCC+TGG 0.361137 6:-115066368 None:intergenic
AAACCTCCAAGCTTGATATT+AGG 0.446383 6:-115065814 None:intergenic
ATTCAAGAAAATGGCAATGC+TGG 0.460522 6:+115065303 MsaT034611.1:CDS
GAGTCAAAACAAGGTGTGTT+CGG 0.461549 6:-115066554 None:intergenic
GATAATGTTGTCTTCCTCCT+TGG 0.483423 6:-115065839 None:intergenic
TTAAGGCCTAATATCAAGCT+TGG 0.490508 6:+115065808 MsaT034611.1:CDS
AAGGACTTGCCTGCTTCCTA+TGG 0.502945 6:-115065878 None:intergenic
CAAGAAGAATTGCATCATCA+TGG 0.503609 6:-115066775 None:intergenic
CTTGAAATTTCCTTGGTGGT+TGG 0.519356 6:-115066692 None:intergenic
ACAAAGGGTGCTTCAAGTTG+AGG 0.523660 6:-115066518 None:intergenic
AAAACTTGAAATTTCCTTGG+TGG 0.524064 6:-115066696 None:intergenic
GACAAATCAAAAGTGAAAAG+AGG 0.524219 6:+115065240 MsaT034611.1:CDS
AAGTCAAAGTACTTGAAAAG+TGG 0.535857 6:-115066490 None:intergenic
ATCTCTCTTCCCCTAAAAGC+AGG 0.549254 6:+115065333 MsaT034611.1:CDS
TTTATAGCAGCACAATTACC+AGG 0.551768 6:+115066350 MsaT034611.1:CDS
AGGCCTAATATCAAGCTTGG+AGG 0.552249 6:+115065811 MsaT034611.1:CDS
GGAAGAGTTGTCGTCTAAGA+TGG 0.562423 6:+115065776 MsaT034611.1:CDS
AATAATTAAGGTCATGGGAA+GGG 0.568392 6:+115065206 None:intergenic
AGTGTAAATATTGTTGTCTG+TGG 0.589563 6:-115066444 None:intergenic
AAATAATTAAGGTCATGGGA+AGG 0.599808 6:+115065205 None:intergenic
CAAAAGTGAAAAGAGGTCCA+TGG 0.611543 6:+115065247 MsaT034611.1:CDS
TCATCTTCTTCATTAGACCA+TGG 0.627345 6:-115065264 None:intergenic
GCTTGGAGGTTTCACCAAGG+AGG 0.668256 6:+115065825 MsaT034611.1:CDS
AATTTGTAGGAGTCAAAACA+AGG 0.676985 6:-115066563 None:intergenic
TAGTACTACACCAACCACCA+AGG 0.700097 6:+115066682 MsaT034611.1:CDS
CAAGCTTGGAGGTTTCACCA+AGG 0.746208 6:+115065822 MsaT034611.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr6 gene 115065219 115066826 115065219 ID=MsaG034611
Chr6 mRNA 115065219 115066826 115065219 ID=MsaT034611.1;Parent=MsaG034611
Chr6 exon 115065219 115065354 115065219 ID=MsaT034611.1.exon1;Parent=MsaT034611.1
Chr6 CDS 115065219 115065354 115065219 ID=cds.MsaT034611.1;Parent=MsaT034611.1
Chr6 exon 115065761 115065890 115065761 ID=MsaT034611.1.exon2;Parent=MsaT034611.1
Chr6 CDS 115065761 115065890 115065761 ID=cds.MsaT034611.1;Parent=MsaT034611.1
Chr6 exon 115066343 115066826 115066343 ID=MsaT034611.1.exon3;Parent=MsaT034611.1
Chr6 CDS 115066343 115066826 115066343 ID=cds.MsaT034611.1;Parent=MsaT034611.1
Gene Sequence

>MsaT034611.1

ATGGGAAGGGCACCATGTTGTGACAAATCAAAAGTGAAAAGAGGTCCATGGTCTAATGAAGAAGATGATATTCTCAAACACTACATTCAAGAAAATGGCAATGCTGGTAATTGGATCTCTCTTCCCCTAAAAGCAGGTCTAAATCGTTGTGGGAAGAGTTGTCGTCTAAGATGGTTGAACTATTTAAGGCCTAATATCAAGCTTGGAGGTTTCACCAAGGAGGAAGACAACATTATCTGCACTCTTTTTAGCACCATAGGAAGCAGGTGGTCCTTTATAGCAGCACAATTACCAGGAAGAACAGATAATGACGTGAAAAATCACTGGAACACTAAACTAAAGAAAAAGTATGTAGCAGGAAACTCTTCCACAGACAACAATATTTACACTTTCAACAATACTACTAGTTCTGACCACTTTTCAAGTACTTTGACTTTTCAACCTCAACTTGAAGCACCCTTTGTCTTTGATCAAAAACCGAACACACCTTGTTTTGACTCCTACAAATTTTTGGATTTGCAAGAAACACCAATTAATAATATTCCTTTACCAATTAAAATGGAATCAGAAGCTTTTTACACTGGAAGTAGCTTGAGTAGTAGCTGTAGTACTACACCAACCACCAAGGAAATTTCAAGTTTTTCAAGTGCAACTTTCTTAGAAGAACAAAACAATGATAATCAATGTTTTGAATATGACCATGATGATGCAATTCTTCTTGAAATGTTTCTTGATGATTTATTGAATTAA
Protein sequence

>MsaT034611.1

MGRAPCCDKSKVKRGPWSNEEDDILKHYIQENGNAGNWISLPLKAGLNRCGKSCRLRWLNYLRPNIKLGGFTKEEDNIICTLFSTIGSRWSFIAAQLPGRTDNDVKNHWNTKLKKKYVAGNSSTDNNIYTFNNTTSSDHFSSTLTFQPQLEAPFVFDQKPNTPCFDSYKFLDLQETPINNIPLPIKMESEAFYTGSSLSSSCSTTPTTKEISSFSSATFLEEQNNDNQCFEYDHDDAILLEMFLDDLLN*