AlfalfaGEDB | MsaG034644

M. sativa ssp. caerulea / MsaG034644

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048580 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080050 GO:0080090 GO:0097100 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000113 GO:2000241 GO:2001141
PFAM: PF19239.2

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034644	XP_003620925.1	91.304	368	32	0	1	368	1	368	0.0	701

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034644	sp\|F4K933\|ET2_ARATH	41.799	378	186	10	1	365	15	371	3.37e-84	266

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034644	tr\|G7KJT8\|G7KJT8_MEDTR	91.304	368	32	0	1	368	1	368	0.0	701

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TFs/TRs:

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Gene ID	Type	Classification
MsaG034644	TF	HRT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000047	MsaG034644	0.818714	2.962690e-52	6.299185e-50
MsaG000083	MsaG034644	0.821065	8.642937e-53	1.955265e-50
MsaG000113	MsaG034644	0.820766	1.011884e-52	2.270991e-50
MsaG000138	MsaG034644	0.832176	1.983533e-55	6.113154e-53
MsaG000151	MsaG034644	0.815310	1.709166e-51	3.329978e-49
MsaG000153	MsaG034644	0.825996	6.147269e-54	1.589574e-51
MsaG000188	MsaG034644	0.806565	1.311543e-49	2.062763e-47
MsaG000213	MsaG034644	0.826237	5.389537e-54	1.402970e-51
MsaG000243	MsaG034644	0.826863	3.828631e-54	1.014178e-51
MsaG000247	MsaG034644	0.847663	1.895222e-59	9.489459e-57

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034644	MtrunA17_Chr6g0488451	91.304	368	32	0	1	368	1	368	0.0	701
MsaG034644	MtrunA17_Chr7g0256351	73.458	373	88	2	2	363	6	378	0.0	549
MsaG034644	MtrunA17_Chr6g0488431	65.766	111	33	1	1	111	3	108	3.53e-43	145
MsaG034644	MtrunA17_Chr6g0488421	44.167	120	52	2	121	226	22	140	5.63e-25	106

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034644	AT5G56780.1	41.799	378	186	10	1	365	15	371	3.43e-85	266
MsaG034644	AT5G56780.1	36.364	110	65	3	258	367	337	441	9.42e-11	63.5
MsaG034644	AT5G56770.1	35.983	239	111	7	1	238	54	251	1.61e-34	128
MsaG034644	AT4G26170.1	33.708	178	96	4	191	364	234	393	2.67e-18	86.7
MsaG034644	AT4G26170.1	33.113	151	58	4	253	361	355	504	2.63e-12	68.6

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Find 75 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATGTCATGAACATAA+AGG	0.370970	6:-115568637	MsaT034644.1:CDS
AAAGATGTCATGAACATAAA+GGG	0.444185	6:-115568636	MsaT034644.1:CDS
AAATCCGATGAAGCAGACAA+TGG	0.675612	6:-115569036	MsaT034644.1:CDS
AACTGGTTGTCTTCTACAAG+TGG	0.517479	6:+115568669	None:intergenic
AATAATGGTCCACGGCGTCC+GGG	0.492605	6:-115569195	MsaT034644.1:CDS
AATGGAGCTCATTTGGGTAA+TGG	0.455845	6:-115569883	MsaT034644.1:CDS
AATTCCACATATAATAGTTT+TGG	0.286040	6:+115568708	None:intergenic
AATTGGTTTCAGATTCTTAT+TGG	0.254920	6:-115570135	MsaT034644.1:intron
ACACAATTAATAATGGTCCA+CGG	0.669239	6:-115569203	MsaT034644.1:CDS
ACTCCGAGCTCATAGACTCC+CGG	0.622890	6:+115570030	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	115568603	115570784	115568603	ID=MsaG034644
Chr6	mRNA	115568603	115570784	115568603	ID=MsaT034644.1;Parent=MsaG034644
Chr6	exon	115568603	115569292	115568603	ID=MsaT034644.1.exon3;Parent=MsaT034644.1
Chr6	CDS	115568603	115569292	115568603	ID=cds.MsaT034644.1;Parent=MsaT034644.1
Chr6	exon	115569789	115570145	115569789	ID=MsaT034644.1.exon2;Parent=MsaT034644.1
Chr6	CDS	115569789	115570145	115569789	ID=cds.MsaT034644.1;Parent=MsaT034644.1
Chr6	exon	115570725	115570784	115570725	ID=MsaT034644.1.exon1;Parent=MsaT034644.1
Chr6	CDS	115570725	115570784	115570725	ID=cds.MsaT034644.1;Parent=MsaT034644.1

Gene Sequence

>MsaT034644.1

ATGTTGAAGAGAGAGCAATGTGACTACACTAAACATGATTCTAGCTTCTCTCATTGGAAGATTCTTATTGGTCCTTCTGATTGGGAAGACTACTCCAAAGGAAAGGAAGGTTGTCCAAGATATAGAATCCATAACCTGCCACAAAATTCGGGGCCGGGAGTCTATGAGCTCGGAGTAGCTCTGTCGACTAGCGGTTTGGGACGTGAAATTTACAAGCTTGTCACCGACTTGCATCGAGTAGTTGTGGTTTATTTAGGAAAAGCTGATAATGTGAGAACAAGACTCCAATGTTATGGTAGAAATGGAGCTCATTTGGGTAATGGTTGTTCTTCATTTGAATCTTCTCACCAAAAGGGACGTTCATTGTTTCATGAAATCTTTCTTCAAGGTTTCCCAATTGTTTATAGATGGGCTCCTATGCAGACCAAGGGAGATGCCTTGCAAACAGAATCTCAACTACTGAGTACATTTGATTATGCTTGGAACACAATTAATAATGGTCCACGGCGTCCGGGTGATATTCTTGAAATACTCAACAAAATTTCATCAGGCACAAGAACATTTTCAGATGTAGCCAAATCACTTCTACCCTTCACTCAAAAGAAAGTAGGGATACCAATTAAATCAAGCATGTTGCCTATGAAAGATAACAAATCCGATGAAGCAGACAATGGCGGCTACAATTTCCTATCTCGCGTGTTCAAATTCTACCGCTCGCTTCCTAAGATAGTTCAAGATACAACTGATTTTTCCGTTGAGAAGAGTGGTAAAATTTGTGGAGTGATTTTGGATGATGGTTCTATTTGTACAAATACGCCGGTCGAAAAAAGAGTTAGGTGTCATGAACATAAAGGAATGAGAATAAGAACATCCAAGTCAGAATCAAAAAGAGGAAATGCTTGTAGGTACCAAAATATTAAACATGATGTTGAAGATCTTCCACAAACAATGGCTGAGAGTCTTGTTGATGAGAGTGTCACCAAAACTATTATATGTGGAATTATTTTGAAAGATGGATCCACTTGTAGAAGACAACCAGTTAAAGGAAGAAAAAGATGTCATGAACATAAAGGGAAGAGAATTCGTGCATTTGTTCCTATTAATTAG

Protein sequence

>MsaT034644.1

MLKREQCDYTKHDSSFSHWKILIGPSDWEDYSKGKEGCPRYRIHNLPQNSGPGVYELGVALSTSGLGREIYKLVTDLHRVVVVYLGKADNVRTRLQCYGRNGAHLGNGCSSFESSHQKGRSLFHEIFLQGFPIVYRWAPMQTKGDALQTESQLLSTFDYAWNTINNGPRRPGDILEILNKISSGTRTFSDVAKSLLPFTQKKVGIPIKSSMLPMKDNKSDEADNGGYNFLSRVFKFYRSLPKIVQDTTDFSVEKSGKICGVILDDGSICTNTPVEKRVRCHEHKGMRIRTSKSESKRGNACRYQNIKHDVEDLPQTMAESLVDESVTKTIICGIILKDGSTCRRQPVKGRKRCHEHKGKRIRAFVPIN*