AlfalfaGEDB | MsaG034809

M. sativa ssp. caerulea / MsaG034809

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034809	GAU25993.1	81.053	380	65	4	15	392	12	386	0.0	603

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034809	sp\|A0A3Q7GFB5\|WK72A_SOLLC	47.287	258	117	8	36	288	65	308	2.02e-61	209

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034809	tr\|A0A2Z6M7C1\|A0A2Z6M7C1_TRISU	81.053	380	65	4	15	392	12	386	0.0	603

TFs/TRs:

Gene ID	Type	Classification
MsaG034809	TF	WRKY

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000350	MsaG034809	0.819138	2.375909e-52	5.108163e-50
MsaG000761	MsaG034809	0.817445	5.719134e-52	1.176776e-49
MsaG001270	MsaG034809	0.812829	5.990338e-51	1.096603e-48
MsaG001277	MsaG034809	0.804513	3.516721e-49	5.271614e-47
MsaG002133	MsaG034809	0.806687	1.236250e-49	1.949977e-47
MsaG004456	MsaG034809	0.802844	7.779137e-49	1.121895e-46
MsaG005052	MsaG034809	0.818023	4.240159e-52	8.855630e-50
MsaG005130	MsaG034809	0.826371	5.010644e-54	1.309200e-51
MsaG005203	MsaG034809	0.818727	2.941803e-52	6.256882e-50
MsaG006566	MsaG034809	0.810539	1.875947e-50	3.246053e-48
MsaG006932	MsaG034809	0.820369	1.247206e-52	2.770019e-50
MsaG007363	MsaG034809	0.805219	2.507900e-49	3.821531e-47
MsaG007497	MsaG034809	0.805231	2.493597e-49	3.800815e-47
MsaG007607	MsaG034809	0.826573	4.486430e-54	1.178849e-51
MsaG007746	MsaG034809	0.815592	1.479946e-51	2.904078e-49
MsaG008317	MsaG034809	0.801724	1.319108e-48	1.854411e-46
MsaG010028	MsaG034809	0.839599	2.655169e-57	1.023491e-54
MsaG011575	MsaG034809	0.831507	2.896364e-55	8.753757e-53
MsaG012048	MsaG034809	0.809649	2.910836e-50	4.929000e-48
MsaG012393	MsaG034809	0.802114	1.097889e-48	1.557133e-46
MsaG044816	MsaG034809	0.802008	1.154417e-48	1.633339e-46
MsaG046828	MsaG034809	0.800263	2.615692e-48	3.557532e-46
MsaG001347	MsaG034809	0.890176	2.745677e-73	8.165519e-70
MsaG008267	MsaG034809	0.804747	3.144747e-49	4.739700e-47
MsaG007989	MsaG034809	0.812885	5.824849e-51	1.067806e-48
MsaG013381	MsaG034809	0.854961	1.677668e-61	1.082316e-58
MsaG016523	MsaG034809	0.847492	2.110627e-59	1.050775e-56
MsaG019500	MsaG034809	0.809605	2.974510e-50	5.031481e-48
MsaG032293	MsaG034809	0.821358	7.402095e-53	1.687541e-50
MsaG032586	MsaG034809	0.821538	6.732235e-53	1.542156e-50
MsaG031035	MsaG034809	0.808551	4.990812e-50	8.230225e-48
MsaG034809	MsaG037651	0.819167	2.339715e-52	5.034294e-50
MsaG034809	MsaG036911	0.847827	1.708947e-59	8.604890e-57
MsaG034809	MsaG037636	0.814698	2.332161e-51	4.474029e-49
MsaG034809	MsaG042570	0.853407	4.691755e-61	2.863815e-58
MsaG013265	MsaG034809	0.814705	2.324330e-51	4.459798e-49
MsaG015609	MsaG034809	0.800730	2.102621e-48	2.890177e-46
MsaG016297	MsaG034809	0.807759	7.345034e-50	1.188414e-47
MsaG017362	MsaG034809	0.818503	3.305859e-52	6.990368e-50
MsaG017568	MsaG034809	0.810839	1.616869e-50	2.818252e-48
MsaG017569	MsaG034809	0.805577	2.111737e-49	3.244670e-47
MsaG019447	MsaG034809	0.812125	8.522997e-51	1.533138e-48
MsaG019532	MsaG034809	0.820902	9.419016e-53	2.121636e-50
MsaG021320	MsaG034809	0.801428	1.516262e-48	2.117270e-46
MsaG022907	MsaG034809	0.805801	1.896297e-49	2.928991e-47
MsaG023913	MsaG034809	0.830547	4.970844e-55	1.461200e-52
MsaG023978	MsaG034809	0.803034	7.107330e-49	1.029556e-46
MsaG025316	MsaG034809	0.809168	3.688700e-50	6.173959e-48
MsaG026280	MsaG034809	0.805181	2.553923e-49	3.888286e-47
MsaG027225	MsaG034809	0.822179	4.789660e-53	1.116096e-50
MsaG027432	MsaG034809	0.803807	4.924838e-49	7.262588e-47
MsaG027891	MsaG034809	0.829150	1.084193e-54	3.062147e-52
MsaG029172	MsaG034809	0.818924	2.655080e-52	5.676479e-50
MsaG029717	MsaG034809	0.845090	9.455564e-59	4.345737e-56
MsaG030665	MsaG034809	0.818942	2.630774e-52	5.627109e-50
MsaG031763	MsaG034809	0.805117	2.633605e-49	4.003574e-47
MsaG033531	MsaG034809	0.829482	9.014984e-55	2.570598e-52
MsaG033610	MsaG034809	0.843011	3.393468e-58	1.457696e-55
MsaG033615	MsaG034809	0.822579	3.871802e-53	9.119878e-51
MsaG033651	MsaG034809	0.805629	2.059777e-49	3.168784e-47
MsaG039975	MsaG034809	0.803941	4.620153e-49	6.834535e-47
MsaG039976	MsaG034809	0.813770	3.731302e-51	6.993482e-49
MsaG041746	MsaG034809	0.823227	2.739552e-53	6.566882e-51

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034809	MtrunA17_Chr7g0216891	94.510	255	12	2	15	267	15	269	1.74e-171	491
MsaG034809	MtrunA17_Chr7g0216891	94.656	131	7	0	262	392	454	584	6.99e-72	235
MsaG034809	MtrunA17_Chr4g0060271	46.311	244	112	8	37	267	68	305	4.48e-58	199
MsaG034809	MtrunA17_Chr4g0051181	81.159	69	13	0	199	267	225	293	1.54e-36	139
MsaG034809	MtrunA17_Chr2g0288871	37.004	227	117	5	46	267	150	355	9.24e-35	134
MsaG034809	MtrunA17_Chr7g0270831	34.413	247	96	8	28	267	79	266	1.91e-32	126
MsaG034809	MtrunA17_Chr4g0075201	33.333	225	115	3	45	267	126	317	4.23e-32	126
MsaG034809	MtrunA17_Chr3g0099641	65.385	78	26	1	190	267	225	301	6.74e-30	120
MsaG034809	MtrunA17_Chr2g0322391	31.488	289	142	6	14	267	132	399	2.62e-29	119
MsaG034809	MtrunA17_Chr2g0302391	60.256	78	30	1	190	267	185	261	1.24e-26	110
MsaG034809	MtrunA17_Chr4g0024391	29.213	267	126	9	51	260	12	272	1.94e-22	99.0
MsaG034809	MtrunA17_Chr4g0025061	43.000	100	51	1	168	267	317	410	7.90e-22	97.4
MsaG034809	MtrunA17_Chr4g0025051	44.000	100	50	1	168	267	292	385	1.66e-21	96.7
MsaG034809	MtrunA17_Chr5g0419241	61.404	57	22	0	189	245	49	105	3.54e-20	85.1
MsaG034809	MtrunA17_Chr4g0001361	51.351	74	34	2	196	267	139	212	6.56e-18	84.0
MsaG034809	MtrunA17_Chr3g0106491	48.611	72	36	1	204	275	352	422	1.14e-17	84.7
MsaG034809	MtrunA17_Chr5g0432161	50.000	74	32	2	199	268	399	471	2.90e-17	83.6
MsaG034809	MtrunA17_Chr1g0150271	38.614	101	56	2	173	267	51	151	7.50e-17	79.7
MsaG034809	MtrunA17_Chr1g0150281	48.529	68	35	0	200	267	123	190	9.35e-17	80.1
MsaG034809	MtrunA17_Chr3g0101131	29.744	195	106	5	156	332	350	531	1.19e-16	81.6
MsaG034809	MtrunA17_Chr3g0136961	55.769	52	23	0	216	267	137	188	1.36e-16	79.7
MsaG034809	MtrunA17_Chr5g0445311	33.673	196	113	6	179	364	327	515	1.64e-16	81.3
MsaG034809	MtrunA17_Chr7g0243891	50.000	68	33	1	201	268	358	424	8.45e-16	79.0
MsaG034809	MtrunA17_Chr5g0418191	38.793	116	68	3	154	267	255	369	1.38e-15	78.2
MsaG034809	MtrunA17_Chr3g0079691	39.796	98	53	2	204	301	482	573	1.67e-15	78.6
MsaG034809	MtrunA17_Chr4g0004911	46.377	69	36	1	200	268	319	386	1.91e-15	77.8
MsaG034809	MtrunA17_Chr2g0333851	56.000	50	22	0	218	267	170	219	4.41e-15	75.5
MsaG034809	MtrunA17_Chr7g0249301	44.156	77	39	2	194	267	266	341	4.94e-15	75.9
MsaG034809	MtrunA17_Chr4g0074001	50.000	70	34	1	195	264	337	405	8.47e-15	75.9
MsaG034809	MtrunA17_Chr7g0249311	42.308	78	41	2	194	268	366	442	1.08e-14	75.9
MsaG034809	MtrunA17_Chr4g0042831	34.286	140	82	4	161	300	225	354	1.11e-14	75.1
MsaG034809	MtrunA17_Chr7g0218081	39.024	82	45	2	190	267	379	459	3.91e-14	73.9
MsaG034809	MtrunA17_Chr7g0263531	46.875	64	33	1	204	267	348	410	1.27e-13	72.0
MsaG034809	MtrunA17_Chr7g0263531	35.246	122	51	5	211	331	184	278	2.53e-11	65.1
MsaG034809	MtrunA17_Chr2g0294231	43.243	74	40	2	204	277	190	261	1.49e-13	71.6
MsaG034809	MtrunA17_Chr5g0447701	46.875	64	33	1	204	267	239	301	5.81e-13	69.7
MsaG034809	MtrunA17_Chr4g0068541	50.000	58	28	1	203	260	194	250	1.09e-12	68.9
MsaG034809	MtrunA17_Chr1g0150801	41.096	73	41	2	204	276	89	159	1.56e-12	65.1
MsaG034809	MtrunA17_Chr7g0228941	42.857	77	36	2	197	267	28	102	2.20e-12	63.9
MsaG034809	MtrunA17_Chr7g0224801	44.928	69	34	3	208	276	86	150	4.55e-12	63.9
MsaG034809	MtrunA17_Chr8g0386241	39.506	81	44	4	196	276	85	160	5.56e-12	63.9
MsaG034809	MtrunA17_Chr8g0379461	49.206	63	31	1	207	269	67	128	5.71e-12	65.5
MsaG034809	MtrunA17_Chr3g0139021	47.222	72	30	2	202	267	295	364	7.92e-12	66.2
MsaG034809	MtrunA17_Chr7g0270191	31.858	113	67	3	187	290	107	218	1.19e-11	65.1
MsaG034809	MtrunA17_Chr4g0053281	41.558	77	40	1	218	294	267	338	1.79e-11	65.1
MsaG034809	MtrunA17_Chr1g0194481	41.892	74	41	2	204	277	145	216	1.83e-11	64.7
MsaG034809	MtrunA17_Chr1g0147881	44.444	72	32	2	202	267	243	312	2.31e-11	64.7
MsaG034809	MtrunA17_Chr5g0401821	51.786	56	25	1	212	267	196	249	2.33e-11	63.9
MsaG034809	MtrunA17_Chr1g0184691	52.000	50	24	0	218	267	294	343	3.04e-11	64.3
MsaG034809	MtrunA17_Chr3g0129361	39.189	74	44	1	204	277	131	203	3.33e-11	62.8
MsaG034809	MtrunA17_Chr1g0188941	56.098	41	17	1	216	256	50	89	3.34e-11	60.1
MsaG034809	MtrunA17_Chr2g0319961	45.161	62	34	0	208	269	71	132	4.82e-11	62.8
MsaG034809	MtrunA17_Chr4g0051881	41.538	65	37	1	204	268	165	228	5.58e-11	63.5
MsaG034809	MtrunA17_Chr2g0284321	50.943	53	26	0	217	269	35	87	8.64e-11	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034809	AT5G15130.1	42.000	300	144	7	8	288	10	298	2.16e-53	186
MsaG034809	AT5G15130.2	44.061	261	122	6	47	288	1	256	5.67e-51	178
MsaG034809	AT1G18860.1	38.550	262	139	5	27	267	29	289	2.31e-46	166
MsaG034809	AT1G68150.1	39.640	222	98	6	46	267	100	285	6.05e-38	140
MsaG034809	AT4G04450.2	36.290	248	132	7	36	267	11	248	1.44e-34	132
MsaG034809	AT4G04450.1	36.290	248	132	7	36	267	105	342	3.97e-34	133
MsaG034809	AT1G69810.1	35.565	239	132	6	33	260	19	246	6.22e-33	127
MsaG034809	AT1G62300.1	34.375	224	123	6	45	267	162	362	1.61e-31	125
MsaG034809	AT4G01720.1	72.857	70	19	0	198	267	220	289	2.31e-31	124
MsaG034809	AT4G22070.4	68.657	67	21	0	201	267	281	347	1.42e-27	114
MsaG034809	AT4G22070.3	68.657	67	21	0	201	267	281	347	1.42e-27	114
MsaG034809	AT4G22070.2	68.657	67	21	0	201	267	281	347	1.42e-27	114
MsaG034809	AT4G22070.1	68.657	67	21	0	201	267	281	347	1.42e-27	114
MsaG034809	AT1G69810.2	66.667	60	20	0	201	260	129	188	2.01e-24	102
MsaG034809	AT4G31800.2	60.377	53	21	0	215	267	109	161	7.00e-18	82.8
MsaG034809	AT4G31800.1	60.377	53	21	0	215	267	174	226	7.08e-18	84.0
MsaG034809	AT2G25000.2	44.000	100	50	4	210	307	95	190	7.18e-17	79.7
MsaG034809	AT2G25000.4	44.000	100	50	4	210	307	95	190	7.18e-17	79.7
MsaG034809	AT2G25000.3	42.424	99	53	3	210	307	117	212	8.27e-17	79.7
MsaG034809	AT2G25000.1	42.424	99	53	3	210	307	138	233	9.76e-17	80.1
MsaG034809	AT4G26440.1	46.316	95	43	3	204	297	359	446	9.87e-17	82.4
MsaG034809	AT2G38470.1	50.769	65	31	1	204	268	349	412	1.50e-16	81.6
MsaG034809	AT5G56270.1	50.769	65	31	1	204	268	474	537	1.85e-16	81.6
MsaG034809	AT4G26640.5	46.753	77	39	2	193	268	180	255	4.47e-16	79.7
MsaG034809	AT4G26640.6	46.753	77	39	2	193	268	180	255	4.47e-16	79.7
MsaG034809	AT4G26640.4	46.753	77	39	2	193	268	180	255	4.47e-16	79.7
MsaG034809	AT4G26640.3	46.753	77	39	2	193	268	180	255	4.47e-16	79.7
MsaG034809	AT4G26640.7	46.753	77	39	2	193	268	316	391	5.36e-16	80.1
MsaG034809	AT4G26640.1	46.753	77	39	2	193	268	284	359	5.91e-16	79.7
MsaG034809	AT4G26640.2	46.753	77	39	2	193	268	356	431	8.21e-16	79.7
MsaG034809	AT1G80840.1	48.485	66	34	0	202	267	131	196	1.45e-15	77.0
MsaG034809	AT2G03340.1	44.706	85	41	2	204	288	402	480	2.62e-15	77.8
MsaG034809	AT1G13960.1	45.679	81	37	2	194	268	380	459	2.74e-15	77.8
MsaG034809	AT1G13960.2	45.679	81	37	2	194	268	227	306	4.59e-15	76.3
MsaG034809	AT2G04880.1	46.053	76	36	2	196	267	282	356	1.15e-14	75.9
MsaG034809	AT2G04880.2	46.053	76	36	2	196	267	258	332	1.21e-14	75.9
MsaG034809	AT4G31800.3	65.000	40	14	0	215	254	174	213	1.89e-14	72.8
MsaG034809	AT3G01080.2	48.438	64	32	1	204	267	331	393	2.45e-14	74.7
MsaG034809	AT3G01080.1	48.438	64	32	1	204	267	293	355	2.52e-14	74.7
MsaG034809	AT4G30935.1	40.594	101	49	2	199	289	313	412	4.04e-14	73.9
MsaG034809	AT5G07100.1	47.059	68	35	1	200	267	217	283	4.25e-14	72.8
MsaG034809	AT5G07100.2	47.059	68	35	1	200	267	124	190	4.53e-14	71.2
MsaG034809	AT5G07100.4	47.059	68	35	1	200	267	124	190	4.53e-14	71.2
MsaG034809	AT5G07100.5	47.059	68	35	1	200	267	124	190	4.53e-14	71.2
MsaG034809	AT5G07100.3	47.059	68	35	1	200	267	124	190	4.53e-14	71.2
MsaG034809	AT1G55600.1	41.573	89	46	3	193	277	279	365	5.49e-14	73.9
MsaG034809	AT1G29280.1	56.604	53	23	0	208	260	65	117	7.14e-14	71.6
MsaG034809	AT2G46130.1	45.205	73	38	2	204	276	17	87	7.15e-14	67.8
MsaG034809	AT5G41570.1	44.000	75	41	1	193	267	74	147	2.51e-13	68.2
MsaG034809	AT5G49520.1	35.714	98	56	3	201	294	205	299	3.23e-13	70.9
MsaG034809	AT2G30250.1	48.529	68	34	1	201	268	312	378	4.61e-13	70.5
MsaG034809	AT5G13080.1	41.096	73	41	2	204	276	54	124	6.75e-13	66.2
MsaG034809	AT5G26170.1	30.882	136	73	4	141	260	25	155	7.90e-13	66.6
MsaG034809	AT1G64000.1	46.875	64	33	1	204	267	101	163	9.97e-13	67.0
MsaG034809	AT1G29860.1	31.967	122	81	2	173	293	92	212	1.58e-12	67.8
MsaG034809	AT2G47260.1	36.559	93	51	2	201	293	158	242	6.60e-12	66.6
MsaG034809	AT1G69310.4	46.667	60	31	1	201	260	131	189	6.81e-12	66.2
MsaG034809	AT1G69310.2	46.667	60	31	1	201	260	131	189	6.81e-12	66.2
MsaG034809	AT1G69310.1	46.667	60	31	1	201	260	131	189	6.81e-12	66.2
MsaG034809	AT2G23320.1	54.000	50	23	0	218	267	241	290	8.64e-12	66.2
MsaG034809	AT2G37260.2	51.852	54	25	1	215	268	265	317	1.76e-11	65.5
MsaG034809	AT2G37260.3	51.852	54	25	1	215	268	267	319	1.77e-11	65.5
MsaG034809	AT5G46350.1	44.615	65	35	1	204	268	170	233	1.86e-11	65.1
MsaG034809	AT2G30590.1	45.833	72	31	2	202	267	294	363	2.07e-11	65.5
MsaG034809	AT2G37260.1	51.852	54	25	1	215	268	347	399	2.20e-11	65.5
MsaG034809	AT4G39410.1	39.474	76	45	1	204	279	210	284	3.67e-11	63.9
MsaG034809	AT3G04670.1	54.348	46	21	0	222	267	267	312	4.11e-11	64.3
MsaG034809	AT4G18170.1	40.541	74	43	1	195	268	150	222	5.24e-11	63.9
MsaG034809	AT3G01970.1	40.845	71	40	2	204	274	52	120	9.43e-11	60.1

Find 65 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAATTTGTTGAATCAAAA+TGG	0.181145	7:-1393321	MsaT034809.1:CDS
TCTTTCTCTTTAGGTTTGTT+AGG	0.187408	7:+1395818	None:intergenic
TCCATATCTTCTTTCTCTTT+AGG	0.253785	7:+1395809	None:intergenic
GTATATACCTGTTTCCTTAC+TGG	0.282263	7:+1395003	None:intergenic
GCTTCTTTCTTATACTCATT+TGG	0.300183	7:+1395857	None:intergenic
ACATGTCATCAGCACATCTT+TGG	0.314882	7:+1394099	None:intergenic
AATTCTTCTGAGCTATTCAT+TGG	0.315815	7:+1395719	None:intergenic
GAAGTTGAAGTTGAAGAAAA+AGG	0.324758	7:-1395689	MsaT034809.1:CDS
GAAAATAGAGAGAATGGTTT+AGG	0.330212	7:-1393390	MsaT034809.1:CDS
GGGTTCTTCATCGATTTCTT+CGG	0.336859	7:+1395910	None:intergenic
GGATGTCAATGGAGGAAATA+TGG	0.344144	7:-1395093	MsaT034809.1:CDS
GGTTCTTCATCGATTTCTTC+GGG	0.364223	7:+1395911	None:intergenic
AGAGAGAATGGTTTAGGTGC+AGG	0.371097	7:-1393384	MsaT034809.1:CDS
TCTTCAACTTCAACTTCCTT+TGG	0.371657	7:+1395695	None:intergenic
CTGCTCTTAGAAACAGAAAA+TGG	0.375936	7:+1393207	None:intergenic
CTTTCTCTTTAGGTTTGTTA+GGG	0.381231	7:+1395819	None:intergenic
GCTGCAGTTTCGTCGATTGT+AGG	0.382467	7:-1393444	MsaT034809.1:CDS
AACCCCTTCAAGGCAAGCTT+TGG	0.383268	7:-1393523	MsaT034809.1:intron
AGCAATCAACTTCAACTTCA+TGG	0.396953	7:+1397024	None:intergenic
ACCTAAAGAGAAAGAAGATA+TGG	0.399352	7:-1395810	MsaT034809.1:CDS
TTAGCCTGTGAACTTGTTGT+TGG	0.415702	7:+1393258	None:intergenic
CAAGAAGAAAATAGAGAGAA+TGG	0.423211	7:-1393396	MsaT034809.1:CDS
ACTTGGTGAGTATCCTCAAT+TGG	0.431259	7:-1393349	MsaT034809.1:CDS
GAGAGAATGGTTTAGGTGCA+GGG	0.431975	7:-1393383	MsaT034809.1:CDS
TGAAGGGATCATATTTCAAA+AGG	0.444007	7:-1393287	MsaT034809.1:CDS
TAGAGTCTAATCCAAGACTT+AGG	0.454455	7:+1395780	None:intergenic
TGTTTCCTTACTGGGCATGC+TGG	0.454733	7:+1395012	None:intergenic
TATATACCTGTTTCCTTACT+GGG	0.461590	7:+1395004	None:intergenic
ATGGAAGTTAACCTAAGTCT+TGG	0.464788	7:-1395791	MsaT034809.1:CDS
CGATAGTATGCTCTTGGACA+TGG	0.469854	7:+1395048	None:intergenic
TTGTTGAATCAAAATGGAAA+AGG	0.477286	7:-1393315	MsaT034809.1:CDS
TATGGACAAAAGATAGCAAA+AGG	0.482613	7:-1395075	MsaT034809.1:CDS
GTGCAACGATAGTATGCTCT+TGG	0.484000	7:+1395042	None:intergenic
AGCATGCCCAGTAAGGAAAC+AGG	0.485141	7:-1395010	MsaT034809.1:intron
AAAATGTGCTACAGAGGAGA+TGG	0.486262	7:-1396074	MsaT034809.1:CDS
GAAACAGAAAATGGCAATGA+AGG	0.491332	7:+1393216	None:intergenic
AAATTGTTTGAAACCAATTG+AGG	0.499292	7:+1393336	None:intergenic
CTAGATCAAAATTGTTGACA+TGG	0.502185	7:+1393157	None:intergenic
AAATGGAAAAGGATGTTTGA+AGG	0.506495	7:-1393304	MsaT034809.1:CDS
TGTTAACGATGTCAAAGAAA+CGG	0.508949	7:+1395975	None:intergenic
ACTCATTTGGACTTCTTCCA+AGG	0.530874	7:+1395870	None:intergenic
GGTCAAGGATCAAACAATGT+TGG	0.534416	7:-1393423	MsaT034809.1:CDS
GAGTTTGTGTCACTTTGCCT+TGG	0.535145	7:-1395887	MsaT034809.1:CDS
TTGACATGGTTAACAATGGA+TGG	0.535314	7:+1393171	None:intergenic
AATGGAAAAGGATGTTTGAA+GGG	0.540904	7:-1393303	MsaT034809.1:CDS
GCAGGGTTGAATTTGAAACT+TGG	0.541526	7:-1393366	MsaT034809.1:CDS
TTGCACCAGCATGCCCAGTA+AGG	0.547872	7:-1395017	MsaT034809.1:CDS
TCTTTCAAACAGATGAATGA+TGG	0.549199	7:-1395114	MsaT034809.1:intron
TCTTCAATCTCTGAACTGCT+AGG	0.554571	7:+1397068	None:intergenic
GTCACCAACAACAAGTTCAC+AGG	0.558090	7:-1393262	MsaT034809.1:CDS
AAGGCAAAGTGACACAAACT+CGG	0.562482	7:+1395889	None:intergenic
AGATGAATGATGGATGTCAA+TGG	0.566197	7:-1395104	MsaT034809.1:CDS
GCTATAACTGAATGAAGACT+TGG	0.566497	7:+1393468	None:intergenic
TGATTGCTCTACTGAACAAG+AGG	0.569404	7:-1397009	MsaT034809.1:CDS
ATTGTTGACATGGTTAACAA+TGG	0.603385	7:+1393167	None:intergenic
GTTTCGTCGATTGTAGGTCA+AGG	0.607168	7:-1393438	MsaT034809.1:CDS
TACTGAACAAGAGGTTACAA+AGG	0.612360	7:-1397000	MsaT034809.1:intron
CAAACTAAAATGTGCTACAG+AGG	0.618198	7:-1396080	MsaT034809.1:CDS
AAATGTGCTACAGAGGAGAT+GGG	0.620689	7:-1396073	MsaT034809.1:CDS
AAATCAGATACTAACTCCGT+TGG	0.631920	7:+1395746	None:intergenic
AGCTAAATGTGATACTCCCA+CGG	0.647058	7:-1395570	MsaT034809.1:intron
AGGCAAAGTGACACAAACTC+GGG	0.648244	7:+1395890	None:intergenic
CTCTAAATATATGCTACCAA+CGG	0.650433	7:-1395762	MsaT034809.1:CDS
TAGCTCAGAAGAATTACCAA+AGG	0.660407	7:-1395711	MsaT034809.1:CDS
TGAATGATGGATGTCAATGG+AGG	0.707535	7:-1395101	MsaT034809.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	1393137	1397108	1393137	ID=MsaG034809
Chr7	mRNA	1393137	1397108	1393137	ID=MsaT034809.1;Parent=MsaG034809
Chr7	exon	1393137	1393533	1393137	ID=MsaT034809.1.exon5;Parent=MsaT034809.1
Chr7	CDS	1393137	1393533	1393137	ID=cds.MsaT034809.1;Parent=MsaT034809.1
Chr7	exon	1394101	1394123	1394101	ID=MsaT034809.1.exon4;Parent=MsaT034809.1
Chr7	CDS	1394101	1394123	1394101	ID=cds.MsaT034809.1;Parent=MsaT034809.1
Chr7	exon	1395011	1395124	1395011	ID=MsaT034809.1.exon3;Parent=MsaT034809.1
Chr7	CDS	1395011	1395124	1395011	ID=cds.MsaT034809.1;Parent=MsaT034809.1
Chr7	exon	1395571	1396107	1395571	ID=MsaT034809.1.exon2;Parent=MsaT034809.1
Chr7	CDS	1395571	1396107	1395571	ID=cds.MsaT034809.1;Parent=MsaT034809.1
Chr7	exon	1397001	1397108	1397001	ID=MsaT034809.1.exon1;Parent=MsaT034809.1
Chr7	CDS	1397001	1397108	1397001	ID=cds.MsaT034809.1;Parent=MsaT034809.1

Gene Sequence

>MsaT034809.1

ATGTCAAAAATGTCGAGTCCTAGCAGTTCAGAGATTGAAGAGAAAAGAGTTACTTCAATTATCCATGAAGTTGAAGTTGATTGCTCTACTGAACAAGAGGTTACAAAGGAAGACAAACTAAAATGTGCTACAGAGGAGATGGGTGATGTGAAAGAAGAAAACGAAAGATTGAAGACGATGCTATCTCGAGTTGAAAAAGATTACAACTCACTTCAACTCCGTTTCTTTGACATCGTTAACAAAGACGTTTCTATGAAAGATATAGAAGATTCATCAACTTCACCCGAAGAAATCGATGAAGAACCCGAGTTTGTGTCACTTTGCCTTGGAAGAAGTCCAAATGAGTATAAGAAAGAAGCAAAAAACATTGAAAACCCTAACAAACCTAAAGAGAAAGAAGATATGGAAGTTAACCTAAGTCTTGGATTAGACTCTAAATATATGCTACCAACGGAGTTAGTATCTGATTTGAGTCCAATGAATAGCTCAGAAGAATTACCAAAGGAAGTTGAAGTTGAAGAAAAAGGAGCAATATTTTCAACAAATAAATCAACAAAAGTGATAAATGTAAATGATGAGATTTCAGAACTATTGCCTGCTAAAAGAGTCAGAGTTTCTGTGAGAGCTAAATGTGATACTCCCACGATGAATGATGGATGTCAATGGAGGAAATATGGACAAAAGATAGCAAAAGGAAATCCATGTCCAAGAGCATACTATCGTTGCACAGTTGCACCAGCATGCCCAGTAAGGAAACAGGTCCAAAGATGTGCTGATGACATGCAAGCTTTGGCTGAAACAATAAGCAAAGCAATAAGCACTGATCCAAGTCTTCATTCAGTTATAGCTGCTGCAGTTTCGTCGATTGTAGGTCAAGGATCAAACAATGTTGGAAAGCAAGAAGAAAATAGAGAGAATGGTTTAGGTGCAGGGTTGAATTTGAAACTTGGTGAGTATCCTCAATTGGTTTCAAACAATTTGTTGAATCAAAATGGAAAAGGATGTTTGAAGGGATCATATTTCAAAAGGTTGTCACCAACAACAAGTTCACAGGCTAAAAATTTCATGCTTCTTCAACCTTCATTGCCATTTTCTGTTTCTAAGAGCAGTGCTAGTAAATCTCCATCCATTGTTAACCATGTCAACAATTTTGATCTAGATAAGAAGACACATAATTAG

Protein sequence

>MsaT034809.1

MSKMSSPSSSEIEEKRVTSIIHEVEVDCSTEQEVTKEDKLKCATEEMGDVKEENERLKTMLSRVEKDYNSLQLRFFDIVNKDVSMKDIEDSSTSPEEIDEEPEFVSLCLGRSPNEYKKEAKNIENPNKPKEKEDMEVNLSLGLDSKYMLPTELVSDLSPMNSSEELPKEVEVEEKGAIFSTNKSTKVINVNDEISELLPAKRVRVSVRAKCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCADDMQALAETISKAISTDPSLHSVIAAAVSSIVGQGSNNVGKQEENRENGLGAGLNLKLGEYPQLVSNNLLNQNGKGCLKGSYFKRLSPTTSSQAKNFMLLQPSLPFSVSKSSASKSPSIVNHVNNFDLDKKTHN*