AlfalfaGEDB | MsaG034824

M. sativa ssp. caerulea / MsaG034824

KEGG: K06911
GO: -
PFAM: PF00176.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034824	XP_013447791.1	98.238	227	4	0	660	886	66	292	4.90e-156	469

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034824	sp\|Q9ZW82\|PRNL2_ARATH	72.727	231	59	2	660	886	91	321	2.93e-116	360

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034824	tr\|A0A072TVC4\|A0A072TVC4_MEDTR	98.238	227	4	0	660	886	66	292	2.34e-156	469

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TFs/TRs:

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Gene ID	Type	Classification
MsaG034824	TR	SNF2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000143	MsaG034824	0.807301	9.180549e-50	1.469157e-47
MsaG000222	MsaG034824	0.850263	3.620393e-60	1.979706e-57
MsaG000370	MsaG034824	0.820918	9.338238e-53	2.104358e-50
MsaG000402	MsaG034824	0.838411	5.374684e-57	1.996372e-54
MsaG000977	MsaG034824	0.878788	4.443381e-69	7.584194e-66
MsaG002678	MsaG034824	0.872556	5.958772e-67	7.700768e-64
MsaG003567	MsaG034824	0.832043	2.139698e-55	6.569157e-53
MsaG004563	MsaG034824	0.830455	5.234396e-55	1.534612e-52
MsaG005005	MsaG034824	0.847752	1.791744e-59	8.998703e-57
MsaG005006	MsaG034824	0.858936	1.144801e-62	8.548742e-60

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034824	MtrunA17_Chr7g0214271	98.238	227	4	0	660	886	66	292	4.51e-160	469
MsaG034824	MtrunA17_Chr5g0445161	62.996	227	82	2	660	885	63	288	5.71e-103	321
MsaG034824	MtrunA17_Chr7g0214291	79.798	198	26	2	114	311	1	184	1.37e-91	287
MsaG034824	MtrunA17_Chr4g0066741	30.814	516	306	15	86	582	179	662	1.64e-66	241
MsaG034824	MtrunA17_Chr2g0286291	28.254	630	363	19	86	672	182	765	5.91e-65	236
MsaG034824	MtrunA17_Chr1g0205891	28.294	463	288	12	102	541	383	824	5.67e-41	163
MsaG034824	MtrunA17_Chr5g0394201	27.214	463	292	13	102	541	370	810	2.54e-39	157
MsaG034824	MtrunA17_Chr5g0403921	24.808	520	342	14	55	542	143	645	4.49e-36	146
MsaG034824	MtrunA17_Chr5g0442141	25.800	469	300	12	103	543	625	1073	8.35e-34	140
MsaG034824	MtrunA17_Chr3g0095091	24.786	468	306	10	103	543	579	1027	1.14e-32	137

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG034824	AT2G43120.1	72.727	231	59	2	660	886	91	321	2.98e-117	360
MsaG034824	AT2G43120.2	72.727	231	59	2	660	886	142	372	8.53e-117	360
MsaG034824	AT3G59220.1	67.873	221	70	1	660	879	64	284	1.10e-105	328
MsaG034824	AT3G59260.1	64.035	228	81	1	660	886	44	271	2.85e-99	311
MsaG034824	AT1G50590.1	55.085	236	97	4	660	886	67	302	2.54e-83	270
MsaG034824	AT1G50590.2	53.947	228	96	4	668	886	1	228	6.84e-79	256
MsaG034824	AT1G50590.3	53.947	228	96	4	668	886	1	228	6.84e-79	256
MsaG034824	AT5G18620.2	31.977	516	300	14	86	582	185	668	2.45e-68	247
MsaG034824	AT5G18620.1	31.977	516	300	14	86	582	185	668	2.46e-68	247
MsaG034824	AT3G06400.3	29.180	610	374	15	86	668	180	758	1.54e-66	241

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Find 161 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATGGACTGCAATTG+TGG	0.498536	7:-1558581	MsaT034824.1:CDS
AAAAGAACAGATCCAATATT+TGG	0.182864	7:+1564641	None:intergenic
AAAAGGATACTCAAGTAGCT+TGG	0.566018	7:-1563937	MsaT034824.1:CDS
AAAATGGCTTCCTTAATTAT+GGG	0.347319	7:+1565642	None:intergenic
AAACACAGAGGAAGAGTTTA+TGG	0.263558	7:-1567082	MsaT034824.1:CDS
AAACGCAACAACATGATCGG+AGG	0.690297	7:+1567155	None:intergenic
AAAGATACCATAATATGATT+TGG	0.376022	7:+1567252	None:intergenic
AAAGGACCATATTGAGCAAT+AGG	0.387063	7:+1557640	None:intergenic
AAATATCAATCAGCCAATTA+AGG	0.350978	7:+1566448	None:intergenic
AACAGGCAGTCGCATGGTGC+TGG	0.370471	7:-1566490	MsaT034824.1:intron

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	1557543	1568851	1557543	ID=MsaG034824
Chr7	mRNA	1557543	1568851	1557543	ID=MsaT034824.1;Parent=MsaG034824
Chr7	exon	1557543	1558029	1557543	ID=MsaT034824.1.exon13;Parent=MsaT034824.1
Chr7	CDS	1557543	1558029	1557543	ID=cds.MsaT034824.1;Parent=MsaT034824.1
Chr7	exon	1558555	1558655	1558555	ID=MsaT034824.1.exon12;Parent=MsaT034824.1
Chr7	CDS	1558555	1558655	1558555	ID=cds.MsaT034824.1;Parent=MsaT034824.1
Chr7	exon	1558771	1558833	1558771	ID=MsaT034824.1.exon11;Parent=MsaT034824.1
Chr7	CDS	1558771	1558833	1558771	ID=cds.MsaT034824.1;Parent=MsaT034824.1
Chr7	exon	1559082	1559110	1559082	ID=MsaT034824.1.exon10;Parent=MsaT034824.1
Chr7	CDS	1559082	1559110	1559082	ID=cds.MsaT034824.1;Parent=MsaT034824.1
Chr7	exon	1563906	1564296	1563906	ID=MsaT034824.1.exon9;Parent=MsaT034824.1
Chr7	CDS	1563906	1564296	1563906	ID=cds.MsaT034824.1;Parent=MsaT034824.1
Chr7	exon	1564396	1564483	1564396	ID=MsaT034824.1.exon8;Parent=MsaT034824.1
Chr7	CDS	1564396	1564483	1564396	ID=cds.MsaT034824.1;Parent=MsaT034824.1
Chr7	exon	1564566	1564792	1564566	ID=MsaT034824.1.exon7;Parent=MsaT034824.1
Chr7	CDS	1564566	1564792	1564566	ID=cds.MsaT034824.1;Parent=MsaT034824.1
Chr7	exon	1565255	1565328	1565255	ID=MsaT034824.1.exon6;Parent=MsaT034824.1
Chr7	CDS	1565255	1565328	1565255	ID=cds.MsaT034824.1;Parent=MsaT034824.1
Chr7	exon	1565412	1565706	1565412	ID=MsaT034824.1.exon5;Parent=MsaT034824.1
Chr7	CDS	1565412	1565706	1565412	ID=cds.MsaT034824.1;Parent=MsaT034824.1
Chr7	exon	1565788	1566327	1565788	ID=MsaT034824.1.exon4;Parent=MsaT034824.1
Chr7	CDS	1565788	1566327	1565788	ID=cds.MsaT034824.1;Parent=MsaT034824.1
Chr7	exon	1566410	1566507	1566410	ID=MsaT034824.1.exon3;Parent=MsaT034824.1
Chr7	CDS	1566410	1566507	1566410	ID=cds.MsaT034824.1;Parent=MsaT034824.1
Chr7	exon	1567055	1567297	1567055	ID=MsaT034824.1.exon2;Parent=MsaT034824.1
Chr7	CDS	1567055	1567297	1567055	ID=cds.MsaT034824.1;Parent=MsaT034824.1
Chr7	exon	1568827	1568851	1568827	ID=MsaT034824.1.exon1;Parent=MsaT034824.1
Chr7	CDS	1568827	1568851	1568827	ID=cds.MsaT034824.1;Parent=MsaT034824.1

Gene Sequence

>MsaT034824.1

ATGGTGTTTTTCTCTATAGAACCAGGTTCTCCAGTTCTTCTCTTCCCACCAAATCATATTATGGTATCTTTTGATTGGCTACAAGAAGAAGAAGCGTCCAATGATATACAAGCTGTGTCCGCTACGTCGTCGGACGACGATAGCTCCTCCGATCATGTTGTTGCGTTTGAGCATTTGTTAAAACGGAGTCTTGATCTAATGAACAACAAACCAAATCCAAACACAGAGGAAGAGTTTATGGAAGAGTTTGTTAAATCATATCCATATTGCAGTCGCATGGTGCTGGGATATCATGATACTCTAAGCCTTAATTGGCTGATTGATATTTTCGATCGATCTATGAATGGAGTCTTAGCATACGAGAAGATTGAAGAAAACATTGATAAAGTTCTATATCTTCTGGCATACTTGCAACAACTCAGGAGGACTAATGGTCCTCATTTGATTCTCACGCCCAAGTTGATGATGGACCATTGGATTGATAAGATTAATAGAATTGTTCCAGAGCTAAATACAGTGAAATATCATGATTTGAAGGAAGCTGATTTGAAGGAAGCTGATTTGAAGGAAGCTAGCTTATCACATTTACATATATGTATAGCTAGTTTCGAAGATGCTGCAAAGGATGTTGCAAAGGAGTTTAAACTCTCCAAAATTAAATGGCAATGCACCATTGTAGATCACATTCACTTGGTCACCAAAGAGAAGTCTGTGTTGTCGAAAATGTTGATGATGATTGAATCAAGGAGTAGCATGGTGATAACTAGGAGACTGCCAAAGTTGGATGGCGACCTCTCTGAACTTCCTATTTTTCTTAACTTATGGCTGCCAAAACTTTTCATTATCAACAGAAAGTATGAGTTTGGGCCTGCTCAGAAACCCGTTATTATTGAAATGATGAATGCGATTTACAGCTCATTTCCTTCTCAATACCCGAAATCAGAATTACCCATAATTAAGGAAGCCATTTTGAGGGTCGGAATGTCGGAAGTTCAGATGCAGTATTATCGTGCCTTCATAGAGTCAACTAATATGTGGGTCGGTTATATTTTAACAGGCAGTGGTTTTTGCTCTAAAAAGGAAGAAAAAGAACTATTGAAGCTTGCAATTAACCTTTGTGAATGTTGCTGTCACCCGTATATGGTGCAACCTATACGTGGTCCTCCGCACAAAAATAAAAAGCATCTCATTGATAATTCAGGAAAAATGAAGCTGTTTGTAGAAATACTCAAAACTTTCCAAGATCAACCTAAAAAACTTGTTGTATTTTCACAGTTTTATAATCAGCTCACAATAATCCAACACTACTTTGAGACCCATCAAAATTATGGTTTTCAATGTCTCCGCTTGGATGAAGAATCAAGTTGGGAGAAAGAAAAGAATGTGTTGGAAAGTTTCAAGAAACCAAATATTGGATCTGTTCTTTTGCTGCCTTCGCGAACAGGAGGTCGTCGGTTGAATCTGACATGTGCGGATAGATTAATATATTTTGACCCTGATTGGGATCCTAAATCAGAGGCAATGAGGTTGGATCAGATTCGCGGTGATGGTCAAAAACCTGAAGTCTATTTATACCGATTATGTGCGAAGACAACCATTGAAGCAAAGATCATTGAGAGATCCTACAAAGTTCGGTCAGCTCAAGAGCAAATGTATATGGAAGAACAGAATGATGATTGTAGACCATGGTTTCTCGATGCTTCAATTAATGTCACAGATTTATTGCAAGCTATTAGATACAATGCTCGCACTCTTGTTAGAGAAATGAAGATAAACATTGAATGTGGAGTTATGAAGGAGTATGCTAAGAAGGAATCGCGTGAAACAAAGGTGTTTGTGGATAGTGTTGTCAGTCAGCCTAATAGGATTTGGATGAGTGATTTGCTCGGGTTTGTTTTAGAGGATCGCAAAGCAAATAAAGACTACGAAAAGGATACTCAAGTAGCTTGGTGGGAAGCTAAGCGTTTGCAAAGAGCTAGACGTTTTGAGACAGTCACCTACATGCTAGAGGGAGGTATAACTCACCAAGATTTTGCTGGCCACAAGGGTACAATAAGAACTGGTGATGTTCAGTGGATGACTGCAGGGAGGGGAATTATTCACTCTGAAATGCCTGCAGAAGCAAAAAACAATGGACTGCAATTGTGGATCAATTTAGCAGCTAATGACAAAATGATTGAACCAAACTATCAGGAACTTCTAAGTGAGAACATACCATCAGGAGAAAAAGATGGTGTTGAAGTGAGAGTGATAGCAGGAGAATCAATGGGAGTGAATTCACCTGTCTACACAAGAACACCAACCATGTTCCTTGATTTCACCATGATGCCAGGAACTCAAGTTCATCAAACTATTCCTGAGTCATGGAATTCATTTGCATACATAATTGAAGGAGAAGGTGTTTTTGGTTCACAAAATTCATCACCAATTGTGGCTCACCATATCATTGTTTTCACTCAAGGTGATGGACTTAGTGTTTGGAATAATAACTCTTCAAAGCCTTTGAGGTTTGTGCTCATTGGTGGACAACCATTGAATGAACCTATTGCTCAATATGGTCCTTTTGTCATGAATACACAATCTGAGATTGAGAAGACTATTGAAGACTATCAATATGGTAGGAATGGTTTTGAGATGAGGCTAAATTATAGGTCTCAATAG

Protein sequence

>MsaT034824.1

MVFFSIEPGSPVLLFPPNHIMVSFDWLQEEEASNDIQAVSATSSDDDSSSDHVVAFEHLLKRSLDLMNNKPNPNTEEEFMEEFVKSYPYCSRMVLGYHDTLSLNWLIDIFDRSMNGVLAYEKIEENIDKVLYLLAYLQQLRRTNGPHLILTPKLMMDHWIDKINRIVPELNTVKYHDLKEADLKEADLKEASLSHLHICIASFEDAAKDVAKEFKLSKIKWQCTIVDHIHLVTKEKSVLSKMLMMIESRSSMVITRRLPKLDGDLSELPIFLNLWLPKLFIINRKYEFGPAQKPVIIEMMNAIYSSFPSQYPKSELPIIKEAILRVGMSEVQMQYYRAFIESTNMWVGYILTGSGFCSKKEEKELLKLAINLCECCCHPYMVQPIRGPPHKNKKHLIDNSGKMKLFVEILKTFQDQPKKLVVFSQFYNQLTIIQHYFETHQNYGFQCLRLDEESSWEKEKNVLESFKKPNIGSVLLLPSRTGGRRLNLTCADRLIYFDPDWDPKSEAMRLDQIRGDGQKPEVYLYRLCAKTTIEAKIIERSYKVRSAQEQMYMEEQNDDCRPWFLDASINVTDLLQAIRYNARTLVREMKINIECGVMKEYAKKESRETKVFVDSVVSQPNRIWMSDLLGFVLEDRKANKDYEKDTQVAWWEAKRLQRARRFETVTYMLEGGITHQDFAGHKGTIRTGDVQWMTAGRGIIHSEMPAEAKNNGLQLWINLAANDKMIEPNYQELLSENIPSGEKDGVEVRVIAGESMGVNSPVYTRTPTMFLDFTMMPGTQVHQTIPESWNSFAYIIEGEGVFGSQNSSPIVAHHIIVFTQGDGLSVWNNNSSKPLRFVLIGGQPLNEPIAQYGPFVMNTQSEIEKTIEDYQYGRNGFEMRLNYRSQ*