AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG034824


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG034824 MtrunA17_Chr7g0214271 98.238 227 4 0 660 886 66 292 4.51e-160 469
MsaG034824 MtrunA17_Chr5g0445161 62.996 227 82 2 660 885 63 288 5.71e-103 321
MsaG034824 MtrunA17_Chr7g0214291 79.798 198 26 2 114 311 1 184 1.37e-91 287
MsaG034824 MtrunA17_Chr4g0066741 30.814 516 306 15 86 582 179 662 1.64e-66 241
MsaG034824 MtrunA17_Chr2g0286291 28.254 630 363 19 86 672 182 765 5.91e-65 236
MsaG034824 MtrunA17_Chr1g0205891 28.294 463 288 12 102 541 383 824 5.67e-41 163
MsaG034824 MtrunA17_Chr5g0394201 27.214 463 292 13 102 541 370 810 2.54e-39 157
MsaG034824 MtrunA17_Chr5g0403921 24.808 520 342 14 55 542 143 645 4.49e-36 146
MsaG034824 MtrunA17_Chr5g0442141 25.800 469 300 12 103 543 625 1073 8.35e-34 140
MsaG034824 MtrunA17_Chr3g0095091 24.786 468 306 10 103 543 579 1027 1.14e-32 137
MsaG034824 MtrunA17_Chr7g0214301 81.250 80 14 1 21 99 1 80 1.58e-30 115
MsaG034824 MtrunA17_Chr7g0232121 22.736 497 323 12 92 543 36 516 4.61e-29 124
MsaG034824 MtrunA17_Chr3g0137091 23.438 576 373 19 103 642 297 840 4.47e-28 122
MsaG034824 MtrunA17_Chr4g0052341 23.191 470 321 13 98 543 748 1201 3.31e-26 116
MsaG034824 MtrunA17_Chr7g0231521 22.105 475 270 12 92 541 36 435 6.65e-25 111
MsaG034824 MtrunA17_Chr8g0348721 24.835 455 298 11 101 524 993 1434 1.91e-24 110
MsaG034824 MtrunA17_Chr4g0066651 23.871 465 305 13 103 537 997 1442 3.10e-24 110
MsaG034824 MtrunA17_Chr7g0248031 25.386 453 295 11 101 522 1000 1440 3.25e-24 110
MsaG034824 MtrunA17_Chr1g0183681 29.565 230 142 6 314 540 659 871 3.02e-21 100
MsaG034824 MtrunA17_Chr1g0163011 21.875 512 320 15 101 539 201 705 6.34e-19 92.0
MsaG034824 MtrunA17_Chr5g0393461 30.675 163 109 3 397 558 534 693 2.56e-17 87.4
MsaG034824 MtrunA17_Chr7g0257101 30.488 164 107 3 388 548 1177 1336 4.08e-17 87.0
MsaG034824 MtrunA17_Chr7g0257101 22.549 306 210 7 103 387 586 885 3.61e-15 80.5
MsaG034824 MtrunA17_Chr4g0017211 21.326 558 350 21 74 554 1421 1966 8.42e-17 85.9
MsaG034824 MtrunA17_Chr8g0384531 23.452 533 300 21 85 540 375 876 2.78e-16 84.0
MsaG034824 MtrunA17_Chr1g0175191 25.758 198 136 4 356 546 1011 1204 5.78e-16 83.2
MsaG034824 MtrunA17_Chr1g0175191 23.492 315 207 11 87 383 513 811 2.45e-13 74.7
MsaG034824 MtrunA17_Chr7g0255821 33.562 146 90 3 397 538 644 786 2.20e-14 77.8
MsaG034824 MtrunA17_Chr1g0190381 31.613 155 95 2 397 540 184 338 3.27e-12 70.1
MsaG034824 MtrunA17_Chr4g0040301 26.316 228 151 8 398 613 377 599 1.76e-11 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG034824 AT2G43120.1 72.727 231 59 2 660 886 91 321 2.98e-117 360
MsaG034824 AT2G43120.2 72.727 231 59 2 660 886 142 372 8.53e-117 360
MsaG034824 AT3G59220.1 67.873 221 70 1 660 879 64 284 1.10e-105 328
MsaG034824 AT3G59260.1 64.035 228 81 1 660 886 44 271 2.85e-99 311
MsaG034824 AT1G50590.1 55.085 236 97 4 660 886 67 302 2.54e-83 270
MsaG034824 AT1G50590.2 53.947 228 96 4 668 886 1 228 6.84e-79 256
MsaG034824 AT1G50590.3 53.947 228 96 4 668 886 1 228 6.84e-79 256
MsaG034824 AT5G18620.2 31.977 516 300 14 86 582 185 668 2.45e-68 247
MsaG034824 AT5G18620.1 31.977 516 300 14 86 582 185 668 2.46e-68 247
MsaG034824 AT3G06400.3 29.180 610 374 15 86 668 180 758 1.54e-66 241
MsaG034824 AT3G06400.1 31.456 515 304 13 86 582 180 663 3.41e-66 240
MsaG034824 AT3G06400.2 31.456 515 304 13 86 582 180 663 4.18e-66 240
MsaG034824 AT3G06010.1 28.448 464 286 14 102 541 410 851 3.25e-39 158
MsaG034824 AT5G19310.2 27.682 466 286 15 102 541 129 569 2.04e-36 148
MsaG034824 AT5G19310.1 27.682 466 286 15 102 541 393 833 4.97e-36 147
MsaG034824 AT5G66750.1 25.581 473 302 16 102 542 209 663 5.79e-35 143
MsaG034824 AT4G31900.3 25.536 513 336 18 47 539 174 660 3.59e-33 139
MsaG034824 AT4G31900.1 25.536 513 336 18 47 539 174 660 4.07e-33 139
MsaG034824 AT4G31900.2 25.536 513 336 18 47 539 133 619 4.45e-33 138
MsaG034824 AT2G44980.1 24.660 515 330 18 82 559 34 527 1.14e-32 136
MsaG034824 AT2G13370.1 24.618 524 344 14 102 595 632 1134 4.94e-32 135
MsaG034824 AT2G13370.2 24.618 524 344 14 102 595 632 1134 4.94e-32 135
MsaG034824 AT2G13370.3 24.618 524 344 14 102 595 632 1134 4.94e-32 135
MsaG034824 AT2G44980.3 24.432 528 333 18 82 559 34 545 4.29e-31 131
MsaG034824 AT2G44980.2 24.294 531 331 20 82 559 34 546 1.49e-30 130
MsaG034824 AT2G25170.3 24.178 517 332 17 61 543 271 761 1.15e-29 127
MsaG034824 AT2G25170.2 24.178 517 332 17 61 543 262 752 1.17e-29 127
MsaG034824 AT2G25170.1 24.178 517 332 17 61 543 245 735 1.22e-29 127
MsaG034824 AT2G25170.4 24.178 517 332 17 61 543 245 735 1.22e-29 127
MsaG034824 AT2G46020.5 24.731 465 286 14 101 524 987 1428 2.92e-25 114
MsaG034824 AT2G46020.1 24.731 465 286 14 101 524 987 1428 2.92e-25 114
MsaG034824 AT2G46020.6 24.731 465 286 14 101 524 987 1428 2.92e-25 114
MsaG034824 AT2G46020.2 24.946 465 286 14 101 524 987 1429 1.30e-24 112
MsaG034824 AT2G46020.3 24.946 465 286 14 101 524 987 1429 1.30e-24 112
MsaG034824 AT2G46020.4 24.946 465 286 14 101 524 987 1429 1.30e-24 112
MsaG034824 AT5G44800.1 22.308 520 360 13 50 543 644 1145 1.31e-23 108
MsaG034824 AT2G28290.3 23.617 470 300 16 103 537 762 1207 2.27e-20 98.2
MsaG034824 AT2G28290.4 23.617 470 300 16 103 537 762 1207 2.27e-20 98.2
MsaG034824 AT2G28290.1 23.617 470 300 16 103 537 762 1207 2.31e-20 98.2
MsaG034824 AT2G28290.6 23.617 470 300 16 103 537 763 1208 2.32e-20 98.2
MsaG034824 AT2G28290.5 23.617 470 300 16 103 537 763 1208 2.37e-20 98.2
MsaG034824 AT2G28290.2 23.617 470 300 16 103 537 762 1207 2.38e-20 98.2
MsaG034824 AT5G63950.2 21.315 502 306 13 98 540 380 851 2.97e-20 97.4
MsaG034824 AT5G63950.1 21.094 512 312 14 98 540 380 868 2.37e-19 94.4
MsaG034824 AT2G18760.4 28.959 221 141 7 321 540 658 863 1.85e-18 91.7
MsaG034824 AT2G18760.1 28.959 221 141 7 321 540 658 863 1.85e-18 91.7
MsaG034824 AT2G18760.2 28.959 221 141 7 321 540 658 863 1.85e-18 91.7
MsaG034824 AT2G18760.7 28.959 221 141 7 321 540 658 863 1.85e-18 91.7
MsaG034824 AT2G18760.5 28.959 221 141 7 321 540 658 863 1.85e-18 91.7
MsaG034824 AT2G18760.6 28.959 221 141 7 321 540 658 863 1.85e-18 91.7
MsaG034824 AT2G18760.3 28.959 221 141 7 321 540 717 922 1.97e-18 91.7
MsaG034824 AT3G57300.2 31.522 184 113 5 396 575 1234 1408 4.90e-17 87.0
MsaG034824 AT5G05130.1 32.759 174 105 5 405 575 712 876 5.44e-17 86.7
MsaG034824 AT3G57300.1 31.522 184 113 5 396 575 1201 1375 5.77e-17 87.0
MsaG034824 AT3G57300.1 22.741 321 221 7 88 387 579 893 1.74e-16 85.1
MsaG034824 AT3G57300.4 31.522 184 113 5 396 575 1201 1375 5.77e-17 87.0
MsaG034824 AT3G57300.4 22.741 321 221 7 88 387 579 893 1.74e-16 85.1
MsaG034824 AT3G19210.1 28.889 180 125 2 397 575 530 707 1.53e-16 85.1
MsaG034824 AT3G19210.3 28.889 180 125 2 397 575 530 707 1.53e-16 85.1
MsaG034824 AT3G19210.2 28.889 180 125 2 397 575 528 705 1.57e-16 85.1
MsaG034824 AT3G57300.3 23.203 306 208 7 103 387 594 893 2.00e-16 85.1
MsaG034824 AT3G54280.2 21.016 571 369 21 63 559 1447 2009 3.36e-16 84.3
MsaG034824 AT3G54280.1 21.016 571 369 21 63 559 1416 1978 4.84e-16 84.0
MsaG034824 AT3G12810.1 23.810 315 204 10 88 383 529 826 6.56e-15 80.1
MsaG034824 AT3G12810.1 26.531 147 105 1 399 545 1073 1216 2.40e-14 78.6
MsaG034824 AT3G12810.2 23.810 315 204 10 88 383 525 822 6.72e-15 80.1
MsaG034824 AT3G12810.2 26.531 147 105 1 399 545 1069 1212 2.38e-14 78.6
MsaG034824 AT1G08600.4 31.481 162 100 2 390 540 1104 1265 1.13e-12 72.8
MsaG034824 AT1G08600.3 31.481 162 100 2 390 540 1104 1265 1.13e-12 72.8
MsaG034824 AT1G08600.2 31.481 162 100 2 390 540 1104 1265 1.13e-12 72.8
MsaG034824 AT1G08600.1 31.481 162 100 2 390 540 1083 1244 1.17e-12 72.8
MsaG034824 AT2G02090.1 27.857 140 98 1 400 539 587 723 4.61e-11 67.4
MsaG034824 AT1G03750.1 25.694 144 104 2 397 540 524 664 7.27e-11 66.6

Find 161 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAATGGCTTCCTTAATTA+TGG 0.120397 7:+1565641 None:intergenic
GGTGCATTGCCATTTAATTT+TGG 0.168871 7:+1566022 None:intergenic
AAAAGAACAGATCCAATATT+TGG 0.182864 7:+1564641 None:intergenic
AACCTCATTGCCTCTGATTT+AGG 0.222884 7:+1564457 None:intergenic
ATTATGGGTAATTCTGATTT+CGG 0.223425 7:+1565657 None:intergenic
TTTGAGACCCATCAAAATTA+TGG 0.238765 7:-1564737 MsaT034824.1:CDS
TTAAACTCTCCAAAATTAAA+TGG 0.242787 7:-1566031 MsaT034824.1:CDS
TTGAGATGAGGCTAAATTAT+AGG 0.245605 7:-1557552 MsaT034824.1:CDS
CTTCCCACCAAATCATATTA+TGG 0.250518 7:-1567259 MsaT034824.1:CDS
ATCAACAGAAAGTATGAGTT+TGG 0.259070 7:-1565828 MsaT034824.1:CDS
ATGATACTCTAAGCCTTAAT+TGG 0.261799 7:-1566461 MsaT034824.1:CDS
AAACACAGAGGAAGAGTTTA+TGG 0.263558 7:-1567082 MsaT034824.1:CDS
CGTATAGGTTGCACCATATA+CGG 0.265016 7:+1565456 None:intergenic
TCTTCCTCTGTGTTTGGATT+TGG 0.269120 7:+1567090 None:intergenic
CTCAATGATCTTTGCTTCAA+TGG 0.269690 7:+1564270 None:intergenic
ATAAACTCTTCCTCTGTGTT+TGG 0.271040 7:+1567084 None:intergenic
CTTAGAAGTTCCTGATAGTT+TGG 0.274609 7:+1558000 None:intergenic
TTATGGGTAATTCTGATTTC+GGG 0.286195 7:+1565658 None:intergenic
ATCAGAATTACCCATAATTA+AGG 0.293226 7:-1565652 MsaT034824.1:CDS
GTTTGATGAACTTGAGTTCC+TGG 0.312165 7:+1557853 None:intergenic
CGACAACACAGACTTCTCTT+TGG 0.317275 7:+1565974 None:intergenic
TCACTCATCCAAATCCTATT+AGG 0.332089 7:+1564007 None:intergenic
CGACATTCCGACCCTCAAAA+TGG 0.334311 7:+1565626 None:intergenic
TCAGTCAGCCTAATAGGATT+TGG 0.338764 7:-1564015 MsaT034824.1:CDS
GTGTTGTCAGTCAGCCTAAT+AGG 0.345252 7:-1564021 MsaT034824.1:CDS
AAAATGGCTTCCTTAATTAT+GGG 0.347319 7:+1565642 None:intergenic
AAATATCAATCAGCCAATTA+AGG 0.350978 7:+1566448 None:intergenic
TTGAGCTGACCGAACTTTGT+AGG 0.351764 7:+1564243 None:intergenic
AAGCATCTCATTGATAATTC+AGG 0.352193 7:-1565411 MsaT034824.1:intron
AGTTTCAAGAAACCAAATAT+TGG 0.358519 7:-1564653 MsaT034824.1:CDS
AGCTCAAGAGCAAATGTATA+TGG 0.362886 7:-1564227 MsaT034824.1:CDS
AATATAAAACCTTACCAATC+AGG 0.367519 7:+1564551 None:intergenic
AACAGGCAGTCGCATGGTGC+TGG 0.370471 7:-1566490 MsaT034824.1:intron
AAAGATACCATAATATGATT+TGG 0.376022 7:+1567252 None:intergenic
TGATAAAGTTCTATATCTTC+TGG 0.376380 7:-1566291 MsaT034824.1:CDS
AAAGGACCATATTGAGCAAT+AGG 0.387063 7:+1557640 None:intergenic
CTGTTGATAATGAAAAGTTT+TGG 0.391709 7:+1565843 None:intergenic
AATGAACCTATTGCTCAATA+TGG 0.391955 7:-1557646 MsaT034824.1:CDS
AATCGGTATAAATAGACTTC+AGG 0.393568 7:+1564406 None:intergenic
ATTCATCATTTCAATAATAA+CGG 0.394635 7:+1565791 None:intergenic
TTTGAAGGAAGCTGATTTGA+AGG 0.398389 7:-1566126 MsaT034824.1:CDS
ACTATTGAAGACTATCAATA+TGG 0.403357 7:-1557586 MsaT034824.1:CDS
TTCATCATTTCAATAATAAC+GGG 0.405973 7:+1565792 None:intergenic
ATAACTCTTCAAAGCCTTTG+AGG 0.406915 7:-1557696 MsaT034824.1:CDS
CCTTTGAGGTTTGTGCTCAT+TGG 0.408779 7:-1557682 MsaT034824.1:CDS
AAGGTGATGGACTTAGTGTT+TGG 0.411445 7:-1557723 MsaT034824.1:CDS
TAATTACCTTCGCACATAAT+CGG 0.412950 7:+1564389 None:intergenic
AGTGATAGCAGGAGAATCAA+TGG 0.413770 7:-1557935 MsaT034824.1:CDS
TTTGAAGGAAGCTGATTTGA+AGG 0.414750 7:-1566141 MsaT034824.1:CDS
CAGGATTGAACCAAACTATC+AGG 0.418105 7:-1558010 MsaT034824.1:CDS
TTGTGCGGAGGACCACGTAT+AGG 0.419298 7:+1565441 None:intergenic
TATTTCACTGTATTTAGCTC+TGG 0.423345 7:+1566170 None:intergenic
CCAATGGTCCATCATCAACT+TGG 0.427516 7:+1566217 None:intergenic
TTTGGTGGGAAGAGAAGAAC+TGG 0.432986 7:+1567270 None:intergenic
TCATTTGCATACATAATTGA+AGG 0.440817 7:-1557811 MsaT034824.1:CDS
TCAACAGAAAGTATGAGTTT+GGG 0.441960 7:-1565827 MsaT034824.1:CDS
CTTGAGTGAAAACAATGATA+TGG 0.447295 7:+1557743 None:intergenic
TTGAGGTTTGTGCTCATTGG+TGG 0.448207 7:-1557679 MsaT034824.1:CDS
AATAAGAACTGGTGATGTTC+AGG 0.449423 7:-1558770 MsaT034824.1:intron
CAACAACTCAGGAGGACTAA+TGG 0.450299 7:-1566260 MsaT034824.1:CDS
CTTGATTTCACCATGATGCC+AGG 0.451578 7:-1557871 MsaT034824.1:CDS
CGTTTGAGCATTTGTTAAAA+CGG 0.453792 7:-1567137 MsaT034824.1:CDS
TTGAGAGATCCTACAAAGTT+CGG 0.458584 7:-1564252 MsaT034824.1:CDS
ATAATAACGGGTTTCTGAGC+AGG 0.459565 7:+1565804 None:intergenic
TGAGCAATAGGTTCATTCAA+TGG 0.465412 7:+1557652 None:intergenic
TATGAAGGAGTATGCTAAGA+AGG 0.466312 7:-1564074 MsaT034824.1:CDS
CCTTGTGGCCAGCAAAATCT+TGG 0.466878 7:+1558797 None:intergenic
GAGAGGTCGCCATCCAACTT+TGG 0.472105 7:+1565897 None:intergenic
ACAAAATTCATCACCAATTG+TGG 0.472578 7:-1557770 MsaT034824.1:CDS
CATTGAATGTGGAGTTATGA+AGG 0.476204 7:-1564089 MsaT034824.1:CDS
TTTGTGCAGTGGATGACTGC+AGG 0.479673 7:-1558642 MsaT034824.1:intron
GCGTGAAACAAAGGTGTTTG+TGG 0.482529 7:-1564047 MsaT034824.1:CDS
ATGTTGCTGTCACCCGTATA+TGG 0.485979 7:-1565469 MsaT034824.1:CDS
AGTGAAATATCATGATTTGA+AGG 0.491881 7:-1566156 MsaT034824.1:CDS
CACAAGGGTACAATAAGAAC+TGG 0.492820 7:-1558781 MsaT034824.1:CDS
AAAACAATGGACTGCAATTG+TGG 0.498536 7:-1558581 MsaT034824.1:CDS
TTGGATCAGATTCGCGGTGA+TGG 0.500697 7:-1564436 MsaT034824.1:CDS
GACTATCAATATGGTAGGAA+TGG 0.507862 7:-1557577 MsaT034824.1:CDS
AGCAAATAAAGACTACGAAA+AGG 0.508607 7:-1563954 MsaT034824.1:CDS
CTGGCATCATGGTGAAATCA+AGG 0.508793 7:+1557872 None:intergenic
GATGGGTCTCAAAGTAGTGT+TGG 0.512658 7:+1564747 None:intergenic
GGACACAGCTTGTATATCAT+TGG 0.513302 7:+1567203 None:intergenic
GATTGTGTATTCATGACAAA+AGG 0.515755 7:+1557622 None:intergenic
TCATAGAGTCAACTAATATG+TGG 0.517870 7:-1565575 MsaT034824.1:CDS
GTTGGTGTTCTTGTGTAGAC+AGG 0.520089 7:+1557901 None:intergenic
AACTAGGAGACTGCCAAAGT+TGG 0.520917 7:-1565910 MsaT034824.1:CDS
CTTGGATGAAGAATCAAGTT+GGG 0.521407 7:-1564699 MsaT034824.1:CDS
TTTGGATGAGTGATTTGCTC+GGG 0.523054 7:-1563997 MsaT034824.1:CDS
TCTCACGCCCAAGTTGATGA+TGG 0.528994 7:-1566225 MsaT034824.1:CDS
GGATACTCAAGTAGCTTGGT+GGG 0.530128 7:-1563933 MsaT034824.1:CDS
ACAGGCAGTCGCATGGTGCT+GGG 0.532018 7:-1566489 MsaT034824.1:intron
GTGATAGCAGGAGAATCAAT+GGG 0.534226 7:-1557934 MsaT034824.1:CDS
ATGATATGGTGAGCCACAAT+TGG 0.536674 7:+1557757 None:intergenic
GGAGTAGCATGGTGATAACT+AGG 0.537730 7:-1565926 MsaT034824.1:CDS
CATTGTAGATCACATTCACT+TGG 0.541319 7:-1566000 MsaT034824.1:CDS
ATTTGGATGAGTGATTTGCT+CGG 0.545396 7:-1563998 MsaT034824.1:CDS
TAAATCAGAGGCAATGAGGT+TGG 0.545537 7:-1564455 MsaT034824.1:CDS
GATACCATAATATGATTTGG+TGG 0.546074 7:+1567255 None:intergenic
CAGTTCTTATTGTACCCTTG+TGG 0.546116 7:+1558782 None:intergenic
GCAAATGAATTCCATGACTC+AGG 0.546190 7:+1557826 None:intergenic
ATCAAACTATTCCTGAGTCA+TGG 0.547660 7:-1557837 MsaT034824.1:CDS
ATATAAAACCTTACCAATCA+GGG 0.548160 7:+1564552 None:intergenic
TCTGATTTCGGGTATTGAGA+AGG 0.548552 7:+1565669 None:intergenic
GGAGAAAGAAAAGAATGTGT+TGG 0.551322 7:-1564678 MsaT034824.1:CDS
ATGAAGATAAACATTGAATG+TGG 0.552925 7:-1564100 MsaT034824.1:CDS
CATATTAGTTGACTCTATGA+AGG 0.553641 7:+1565578 None:intergenic
CCAAGTTGATGATGGACCAT+TGG 0.554041 7:-1566217 MsaT034824.1:CDS
GCTTGGATGAAGAATCAAGT+TGG 0.555325 7:-1564700 MsaT034824.1:CDS
TATTAATCTTATCAATCCAA+TGG 0.563475 7:+1566201 None:intergenic
AGCTGTGTCCGCTACGTCGT+CGG 0.563964 7:-1567190 MsaT034824.1:CDS
CTAAGTGAGAACATACCATC+AGG 0.564908 7:-1557982 MsaT034824.1:CDS
AAAAGGATACTCAAGTAGCT+TGG 0.566018 7:-1563937 MsaT034824.1:CDS
TGCTGCAAAGGATGTTGCAA+AGG 0.566644 7:-1566057 MsaT034824.1:CDS
TTGTGCAGTGGATGACTGCA+GGG 0.569971 7:-1558641 MsaT034824.1:intron
CTCAAACGCAACAACATGAT+CGG 0.573431 7:+1567152 None:intergenic
TTGCTGCCTTCGCGAACAGG+AGG 0.573831 7:-1564620 MsaT034824.1:CDS
TTGAAGACTATCAATATGGT+AGG 0.576598 7:-1557582 MsaT034824.1:CDS
CAATGGTCCATCATCAACTT+GGG 0.577723 7:+1566218 None:intergenic
GTATAGGTTGCACCATATAC+GGG 0.578126 7:+1565457 None:intergenic
GTTGAAGTGAGAGTGATAGC+AGG 0.579971 7:-1557946 MsaT034824.1:CDS
AGGATACTCAAGTAGCTTGG+TGG 0.581981 7:-1563934 MsaT034824.1:CDS
GAAGGAATCGCGTGAAACAA+AGG 0.585401 7:-1564056 MsaT034824.1:CDS
CTTCGCGAACAGGAGGTCGT+CGG 0.590329 7:-1564613 MsaT034824.1:CDS
GCATACATAATTGAAGGAGA+AGG 0.591101 7:-1557805 MsaT034824.1:CDS
GCAGTGGATGACTGCAGGGA+GGG 0.592783 7:-1558637 MsaT034824.1:intron
TGGCATACTTGCAACAACTC+AGG 0.594770 7:-1566271 MsaT034824.1:CDS
AACTTGAGTTCCTGGCATCA+TGG 0.595280 7:+1557861 None:intergenic
TGTTGATGATGATTGAATCA+AGG 0.596330 7:-1565947 MsaT034824.1:CDS
CAGTGGATGACTGCAGGGAG+GGG 0.597592 7:-1558636 MsaT034824.1:CDS
TTGTTCAACAGGCAGTCGCA+TGG 0.598358 7:-1566496 MsaT034824.1:intron
AGGAGACTGCCAAAGTTGGA+TGG 0.601601 7:-1565906 MsaT034824.1:CDS
CATGGTGAAATCAAGGAACA+TGG 0.604059 7:+1557879 None:intergenic
TAGTTTCGAAGATGCTGCAA+AGG 0.605212 7:-1566069 MsaT034824.1:CDS
CATAGAGTCAACTAATATGT+GGG 0.605402 7:-1565574 MsaT034824.1:CDS
AACTTGATTCTTCATCCAAG+CGG 0.605545 7:+1564702 None:intergenic
ATACCATAATATGATTTGGT+GGG 0.610216 7:+1567256 None:intergenic
TTTATACCGATTATGTGCGA+AGG 0.611561 7:-1564395 MsaT034824.1:intron
GATACATACCTCTAGCATGT+AGG 0.612505 7:+1559073 None:intergenic
CCAATGAGCACAAACCTCAA+AGG 0.613431 7:+1557682 None:intergenic
ATGAGGTTGGATCAGATTCG+CGG 0.615463 7:-1564442 MsaT034824.1:CDS
GAGTCAACTAATATGTGGGT+CGG 0.621739 7:-1565570 MsaT034824.1:CDS
TATTATTGAAATGATGAATG+CGG 0.623967 7:-1565787 MsaT034824.1:intron
ATCCTAAATCAGAGGCAATG+AGG 0.636364 7:-1564459 MsaT034824.1:CDS
TATCAGGGATCCTAAATCAG+AGG 0.644434 7:-1564467 MsaT034824.1:intron
ATTGAAGCATCGAGAAACCA+TGG 0.644735 7:+1564181 None:intergenic
TGCAGTGGATGACTGCAGGG+AGG 0.648962 7:-1558638 MsaT034824.1:intron
CGACGACCTCCTGTTCGCGA+AGG 0.650161 7:+1564614 None:intergenic
TGGAGTCTTAGCATACGAGA+AGG 0.658530 7:-1566409 MsaT034824.1:intron
GTGAAATCAAGGAACATGGT+TGG 0.672435 7:+1557883 None:intergenic
ATCGTCGTCCGACGACGTAG+CGG 0.673036 7:+1567182 None:intergenic
GACAGTCACCTACATGCTAG+AGG 0.675614 7:-1559081 MsaT034824.1:intron
AGAATGATGATTGTAGACCA+TGG 0.679692 7:-1564198 MsaT034824.1:CDS
TTGGGCGTGAGAATCAAATG+AGG 0.687571 7:+1566236 None:intergenic
CAAGTGAATGTGATCTACAA+TGG 0.689229 7:+1566001 None:intergenic
TATATGGTGCAACCTATACG+TGG 0.690210 7:-1565453 MsaT034824.1:CDS
AAACGCAACAACATGATCGG+AGG 0.690297 7:+1567155 None:intergenic
TCGGTTGAATCTGACATGTG+CGG 0.695135 7:-1564594 MsaT034824.1:CDS
GATTGAATCAAGGAGTAGCA+TGG 0.702044 7:-1565937 MsaT034824.1:CDS
CATACTTGCAACAACTCAGG+AGG 0.705451 7:-1566268 MsaT034824.1:CDS
CAAACCAAATCCAAACACAG+AGG 0.728456 7:-1567094 MsaT034824.1:CDS
GGTGACAGCAACATTCACAA+AGG 0.733877 7:+1565478 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 1557543 1568851 1557543 ID=MsaG034824
Chr7 mRNA 1557543 1568851 1557543 ID=MsaT034824.1;Parent=MsaG034824
Chr7 exon 1557543 1558029 1557543 ID=MsaT034824.1.exon13;Parent=MsaT034824.1
Chr7 CDS 1557543 1558029 1557543 ID=cds.MsaT034824.1;Parent=MsaT034824.1
Chr7 exon 1558555 1558655 1558555 ID=MsaT034824.1.exon12;Parent=MsaT034824.1
Chr7 CDS 1558555 1558655 1558555 ID=cds.MsaT034824.1;Parent=MsaT034824.1
Chr7 exon 1558771 1558833 1558771 ID=MsaT034824.1.exon11;Parent=MsaT034824.1
Chr7 CDS 1558771 1558833 1558771 ID=cds.MsaT034824.1;Parent=MsaT034824.1
Chr7 exon 1559082 1559110 1559082 ID=MsaT034824.1.exon10;Parent=MsaT034824.1
Chr7 CDS 1559082 1559110 1559082 ID=cds.MsaT034824.1;Parent=MsaT034824.1
Chr7 exon 1563906 1564296 1563906 ID=MsaT034824.1.exon9;Parent=MsaT034824.1
Chr7 CDS 1563906 1564296 1563906 ID=cds.MsaT034824.1;Parent=MsaT034824.1
Chr7 exon 1564396 1564483 1564396 ID=MsaT034824.1.exon8;Parent=MsaT034824.1
Chr7 CDS 1564396 1564483 1564396 ID=cds.MsaT034824.1;Parent=MsaT034824.1
Chr7 exon 1564566 1564792 1564566 ID=MsaT034824.1.exon7;Parent=MsaT034824.1
Chr7 CDS 1564566 1564792 1564566 ID=cds.MsaT034824.1;Parent=MsaT034824.1
Chr7 exon 1565255 1565328 1565255 ID=MsaT034824.1.exon6;Parent=MsaT034824.1
Chr7 CDS 1565255 1565328 1565255 ID=cds.MsaT034824.1;Parent=MsaT034824.1
Chr7 exon 1565412 1565706 1565412 ID=MsaT034824.1.exon5;Parent=MsaT034824.1
Chr7 CDS 1565412 1565706 1565412 ID=cds.MsaT034824.1;Parent=MsaT034824.1
Chr7 exon 1565788 1566327 1565788 ID=MsaT034824.1.exon4;Parent=MsaT034824.1
Chr7 CDS 1565788 1566327 1565788 ID=cds.MsaT034824.1;Parent=MsaT034824.1
Chr7 exon 1566410 1566507 1566410 ID=MsaT034824.1.exon3;Parent=MsaT034824.1
Chr7 CDS 1566410 1566507 1566410 ID=cds.MsaT034824.1;Parent=MsaT034824.1
Chr7 exon 1567055 1567297 1567055 ID=MsaT034824.1.exon2;Parent=MsaT034824.1
Chr7 CDS 1567055 1567297 1567055 ID=cds.MsaT034824.1;Parent=MsaT034824.1
Chr7 exon 1568827 1568851 1568827 ID=MsaT034824.1.exon1;Parent=MsaT034824.1
Chr7 CDS 1568827 1568851 1568827 ID=cds.MsaT034824.1;Parent=MsaT034824.1
Gene Sequence

>MsaT034824.1

ATGGTGTTTTTCTCTATAGAACCAGGTTCTCCAGTTCTTCTCTTCCCACCAAATCATATTATGGTATCTTTTGATTGGCTACAAGAAGAAGAAGCGTCCAATGATATACAAGCTGTGTCCGCTACGTCGTCGGACGACGATAGCTCCTCCGATCATGTTGTTGCGTTTGAGCATTTGTTAAAACGGAGTCTTGATCTAATGAACAACAAACCAAATCCAAACACAGAGGAAGAGTTTATGGAAGAGTTTGTTAAATCATATCCATATTGCAGTCGCATGGTGCTGGGATATCATGATACTCTAAGCCTTAATTGGCTGATTGATATTTTCGATCGATCTATGAATGGAGTCTTAGCATACGAGAAGATTGAAGAAAACATTGATAAAGTTCTATATCTTCTGGCATACTTGCAACAACTCAGGAGGACTAATGGTCCTCATTTGATTCTCACGCCCAAGTTGATGATGGACCATTGGATTGATAAGATTAATAGAATTGTTCCAGAGCTAAATACAGTGAAATATCATGATTTGAAGGAAGCTGATTTGAAGGAAGCTGATTTGAAGGAAGCTAGCTTATCACATTTACATATATGTATAGCTAGTTTCGAAGATGCTGCAAAGGATGTTGCAAAGGAGTTTAAACTCTCCAAAATTAAATGGCAATGCACCATTGTAGATCACATTCACTTGGTCACCAAAGAGAAGTCTGTGTTGTCGAAAATGTTGATGATGATTGAATCAAGGAGTAGCATGGTGATAACTAGGAGACTGCCAAAGTTGGATGGCGACCTCTCTGAACTTCCTATTTTTCTTAACTTATGGCTGCCAAAACTTTTCATTATCAACAGAAAGTATGAGTTTGGGCCTGCTCAGAAACCCGTTATTATTGAAATGATGAATGCGATTTACAGCTCATTTCCTTCTCAATACCCGAAATCAGAATTACCCATAATTAAGGAAGCCATTTTGAGGGTCGGAATGTCGGAAGTTCAGATGCAGTATTATCGTGCCTTCATAGAGTCAACTAATATGTGGGTCGGTTATATTTTAACAGGCAGTGGTTTTTGCTCTAAAAAGGAAGAAAAAGAACTATTGAAGCTTGCAATTAACCTTTGTGAATGTTGCTGTCACCCGTATATGGTGCAACCTATACGTGGTCCTCCGCACAAAAATAAAAAGCATCTCATTGATAATTCAGGAAAAATGAAGCTGTTTGTAGAAATACTCAAAACTTTCCAAGATCAACCTAAAAAACTTGTTGTATTTTCACAGTTTTATAATCAGCTCACAATAATCCAACACTACTTTGAGACCCATCAAAATTATGGTTTTCAATGTCTCCGCTTGGATGAAGAATCAAGTTGGGAGAAAGAAAAGAATGTGTTGGAAAGTTTCAAGAAACCAAATATTGGATCTGTTCTTTTGCTGCCTTCGCGAACAGGAGGTCGTCGGTTGAATCTGACATGTGCGGATAGATTAATATATTTTGACCCTGATTGGGATCCTAAATCAGAGGCAATGAGGTTGGATCAGATTCGCGGTGATGGTCAAAAACCTGAAGTCTATTTATACCGATTATGTGCGAAGACAACCATTGAAGCAAAGATCATTGAGAGATCCTACAAAGTTCGGTCAGCTCAAGAGCAAATGTATATGGAAGAACAGAATGATGATTGTAGACCATGGTTTCTCGATGCTTCAATTAATGTCACAGATTTATTGCAAGCTATTAGATACAATGCTCGCACTCTTGTTAGAGAAATGAAGATAAACATTGAATGTGGAGTTATGAAGGAGTATGCTAAGAAGGAATCGCGTGAAACAAAGGTGTTTGTGGATAGTGTTGTCAGTCAGCCTAATAGGATTTGGATGAGTGATTTGCTCGGGTTTGTTTTAGAGGATCGCAAAGCAAATAAAGACTACGAAAAGGATACTCAAGTAGCTTGGTGGGAAGCTAAGCGTTTGCAAAGAGCTAGACGTTTTGAGACAGTCACCTACATGCTAGAGGGAGGTATAACTCACCAAGATTTTGCTGGCCACAAGGGTACAATAAGAACTGGTGATGTTCAGTGGATGACTGCAGGGAGGGGAATTATTCACTCTGAAATGCCTGCAGAAGCAAAAAACAATGGACTGCAATTGTGGATCAATTTAGCAGCTAATGACAAAATGATTGAACCAAACTATCAGGAACTTCTAAGTGAGAACATACCATCAGGAGAAAAAGATGGTGTTGAAGTGAGAGTGATAGCAGGAGAATCAATGGGAGTGAATTCACCTGTCTACACAAGAACACCAACCATGTTCCTTGATTTCACCATGATGCCAGGAACTCAAGTTCATCAAACTATTCCTGAGTCATGGAATTCATTTGCATACATAATTGAAGGAGAAGGTGTTTTTGGTTCACAAAATTCATCACCAATTGTGGCTCACCATATCATTGTTTTCACTCAAGGTGATGGACTTAGTGTTTGGAATAATAACTCTTCAAAGCCTTTGAGGTTTGTGCTCATTGGTGGACAACCATTGAATGAACCTATTGCTCAATATGGTCCTTTTGTCATGAATACACAATCTGAGATTGAGAAGACTATTGAAGACTATCAATATGGTAGGAATGGTTTTGAGATGAGGCTAAATTATAGGTCTCAATAG

Protein sequence

>MsaT034824.1

MVFFSIEPGSPVLLFPPNHIMVSFDWLQEEEASNDIQAVSATSSDDDSSSDHVVAFEHLLKRSLDLMNNKPNPNTEEEFMEEFVKSYPYCSRMVLGYHDTLSLNWLIDIFDRSMNGVLAYEKIEENIDKVLYLLAYLQQLRRTNGPHLILTPKLMMDHWIDKINRIVPELNTVKYHDLKEADLKEADLKEASLSHLHICIASFEDAAKDVAKEFKLSKIKWQCTIVDHIHLVTKEKSVLSKMLMMIESRSSMVITRRLPKLDGDLSELPIFLNLWLPKLFIINRKYEFGPAQKPVIIEMMNAIYSSFPSQYPKSELPIIKEAILRVGMSEVQMQYYRAFIESTNMWVGYILTGSGFCSKKEEKELLKLAINLCECCCHPYMVQPIRGPPHKNKKHLIDNSGKMKLFVEILKTFQDQPKKLVVFSQFYNQLTIIQHYFETHQNYGFQCLRLDEESSWEKEKNVLESFKKPNIGSVLLLPSRTGGRRLNLTCADRLIYFDPDWDPKSEAMRLDQIRGDGQKPEVYLYRLCAKTTIEAKIIERSYKVRSAQEQMYMEEQNDDCRPWFLDASINVTDLLQAIRYNARTLVREMKINIECGVMKEYAKKESRETKVFVDSVVSQPNRIWMSDLLGFVLEDRKANKDYEKDTQVAWWEAKRLQRARRFETVTYMLEGGITHQDFAGHKGTIRTGDVQWMTAGRGIIHSEMPAEAKNNGLQLWINLAANDKMIEPNYQELLSENIPSGEKDGVEVRVIAGESMGVNSPVYTRTPTMFLDFTMMPGTQVHQTIPESWNSFAYIIEGEGVFGSQNSSPIVAHHIIVFTQGDGLSVWNNNSSKPLRFVLIGGQPLNEPIAQYGPFVMNTQSEIEKTIEDYQYGRNGFEMRLNYRSQ*